LOC110533249 (dlat)


Basic Information

Item Value
gene id LOC110533249
gene name dlat
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 4262779 ~ 4283484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989511.1
GAATCTTCTGCCCAATGCCACTGTAACATGCCCGGAAGGACAGCCGTAAAGCGTTGTGGTTAAGGAGGTCATTGGAAAGTGAGCTGTTTGCTAGCTACCTGGGCCGGTTCGGGGGGACAGAAAGACACTTTATTGCTACCATTGGTATCAGACATTCTGTTACCTGAGTAGCTCAAACTGAATCTAAAAGCTGTTTCAGCGACTAAACTTATAAAGGCGAAATGCTCCGTCTGGTCCTGCGGCTGAGGCCGTCTGCAGGGTTGCCTCGGTCCCGCGGTGCCCATCCTGAGCTTGCCCTGAGCTCTCGTCCCGTTCGGGGACCCTGTCATCTGAGGCGCTACCACGGCTCTGTCCGGTCCAGGGCTGTTTGCAGTGGAGGTCGTTTCAACACGGTGGTCTTCGCCAGCAGAGCCCTGCTACAGCCCGCCCAGACACAGCGCTTCTACAGCCTACCACCGCACCAGAAGgtggAGCTTCCTGCTCTGTCCCCCACCATGCAGACTGGAACCATCGCTCGCTGGGAGAAAAAGGAGGGAGACAAGATCAACGAGGGAGACCTGATAGCAGAGgtggaGACTGACAAGGCCACGGTGGGGTTTGAGCTGTTGGAAGACTGTTACATGGCCAAGATCCTGGTACCTGAAGGAACTAGAGACGTTACTGTGGGAGCAGTCATCTGCATCACCGTTGACAGTGCTGATCTGATCCCGGCCTTTAAGGACCTGACATTGGAGAAGCTTTCTGCTAGCTCCGCCTCTTCTGCAGCTGTCCCTCCCCCTGTAGCAGCCCCGCCCCCTGCTCCCTCCCCCGGAAGCTCCCTACCCACTCACATgaagGTGTGTCTGCCAGCCCTGTCTCCTACTATGACCATGGGGACAGTGCAGCGCTGGGAGAAGAAGGTTGGAGAGAAACTCAGTGAAGGAGATCTACTGGCGGAGATAGAGACCGACAAGGCTACCATCGggttTGAGGTGCAGGAGGAGGGTTACCTGGCGAAGATCATGGTGTCTGAGGGAACGCGTGACGTTCCTCTGGGCGCTCCTCTCTGCATCATCGTGGAGAAGGAGAGTGACATCGCTGCCTTCAGTGACTACGTAGAGACAGCAGGGGCTGATGTCTCCACCCCACCCCCCGCCCCGGTTGCAGCCCCAACTCATGCAGCGCCCCTCCCTAGCCCAGCCCCCGTTGCCCCAGCAACCCCCAGGAAAGGGCGTGTTTTCGTCAGCCCGCTCGCCAAAACGCTCGCTGCTGAGAAGGGCATTGACCTGGCCCAGGTCAGCGGCTCTGGTCCTGATGGTAGAGTCACCAGGAAAGACATTGAGACCTTTGTCCCTCCCAAGGCTGTCCCTGCTgctcCAGTGTCAGCTGCTCCTAGCCCTGCCTCTACTCCCTCCCCAGCCGTTGCCGTGTCAACAGGCACCTTCACCGACATCCCCATCAGCAACATCCGACGGGTGATAGCCCAGAGGTTGATGCAGTCTAAACAGACCATTCCCCACTACTACCTGTCTGTTGACGTCAACATGGACCAAGTCCTGGAACTACGCATGGAGCTCAACGCTGAGGTAAAGGCCCAGAACATCAAGCTGAGTGTGAATGACTTCATCATTAAAGCCAGTGCTCTAGCCTGCCTTAAGGTCCCTGAAGCCAACTCCTCATGGCTCGACTCTGTTATCCGGCAgaaccATGTGGTGGATGTGAGTGTGGCGGTGAGTACACCCAACGGTCTGATAACGCCCATCGTGTTCAACGCCCACACCAAGGGACTGGCTGCAATCAGCTCTGATGTCTCAGCCCTGGCTGCCAAGGCCCGCGACGGGAAACTACAGCCGCATGAGTTCCAGGGAGGCACGTTTACCATCTCTAACCTGGGAATGTTTGGCGTCAAGAACTTCTCAGCCATCATTAACCCTCCCCAGGCCTGTATACTGGCAGTAGGGGGCTCAGAGAAGAGACTGCTGCCCGCTGACAATGAGAAAGGGTTTGATGTGGCCAGCATGATGTCGGTGACGTTGAGTTGTGACCATCGCGTGGTGGACGGAGCGATCGGAGCTCAGTGGCTCGCAGAGTTCAGGAAGTTCCTGGAGAAGCCTGTCACCATGCTGCTCTGATTGGACAACTCTCTCACCAGGCCATGCTGTGGTTGGCTGCAGCCGTCGGcaagctgatctgattggtggaAACCTTTTCATCATGCTTCTGTGATTAGCTGGCCCACCACAAGGACACTCCCCCTTAAAGGGGTGAGGCAGGACTCACTCCCCTCCCAGAGTATAacacccctccccatctctctctctttatttattgCGACCACATAGTTACAGTTTAGACCAGAAGCCATAATGTCACTCATGTTTATAAAGGGAACTGTTACAGACccgcccctgtgtgtgtgtacaaagaGTATTGGAGATTGTGTTTAAAAGCCAAAGTAAGATGTAGAATGCCCCCTAGACTCACTCACATGCCCACTGCAGACCACCCTAGCTCCTCTGAAGAACCATATGTTGTGAACACATTGACAGTTCTGCTGGTTGTATGTTCTCCCTTGTAGTTTGTTCATTGATTGATTGGCCAGAGTTCACTCACCTACCTATATTAAGTCTTCAGAGGGGAAGATCGCCAACCGGCCATGCTGCTTATCTCCAGGTGTGGAGCTGATCTATTGGTACCTTCTATAATGCTGTAGGATTGGTGGAATCTTCATTTACAGAGTAGGAGAGGCTTTATTCATGACATCACTCCTGACTAAGCTCTCTGCCAATCCCCTTCTTCTCCAGGACATGTTCTTGTTTTCTAACCCTTGATAAAGAACTTTCTATTTACATGACATCATCTGTAAACAAGTGAAACTGGATATATGGTTTCCATGGAAATTACTGCTGAATAAATTGAAATGAGTCAAAATGAGCTACTATG

Function

symbol description
dlat Contributes to pyruvate dehydrogenase activity. Acts upstream of or within acetyl-CoA biosynthetic process from pyruvate and detection of light stimulus involved in visual perception. Predicted to be part of mitochondrial pyruvate dehydrogenase complex. Is expressed in several structures, including adaxial cell; ectoderm; head; immature eye; and pronephric duct. Used to study lactic acidosis and pyruvate decarboxylase deficiency. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human DLAT (dihydrolipoamide S-acetyltransferase).

NR:

description
dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0045254 pyruvate dehydrogenase complex cellular_component
GO:0004738 pyruvate dehydrogenase activity molecular_function
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity molecular_function

KEGG:

id description
K00627 DLAT, aceF, pdhC; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989511.1 True 2922 mRNA 0.54 14 4262779 4283484

Neighbor

gene id symbol gene type direction distance location
cfap300 LOC106592925 coding downstream 114470 4140817 ~ 4148309 (-)
LOC110533247 LOC105006428 coding downstream 154847 4088926 ~ 4107932 (-)
LOC110491261 LOC106603981 coding downstream 267024 3968210 ~ 3995755 (-)
LOC110492807 coro6 coding downstream 295416 3930198 ~ 3967363 (-)
LOC110491262 NA coding downstream 339313 3916646 ~ 3923466 (-)
c10h11orf1 cssa04h11orf1 coding upstream 2601 4286085 ~ 4301684 (-)
alg9 alg9 coding upstream 26323 4309807 ~ 4363958 (-)
kl kl coding upstream 721462 5004946 ~ 5052396 (-)
LOC110533265 rxfp2 coding upstream 861020 5144504 ~ 5280794 (-)
LOC110533267 LOC106604000 coding upstream 1175247 5458731 ~ 5479247 (-)
G847567 NA non-coding downstream 122028 4136973 ~ 4140751 (-)
G847588 NA non-coding downstream 152199 4110381 ~ 4110580 (-)
G847587 NA non-coding downstream 152701 4109877 ~ 4110078 (-)
G847586 NA non-coding downstream 156478 4105975 ~ 4106301 (-)
G847571 NA non-coding downstream 196560 4062147 ~ 4066219 (-)
G847705 NA non-coding upstream 39153 4322637 ~ 4323090 (-)
G847700 mia non-coding upstream 82295 4365779 ~ 4381030 (-)
G847725 NA non-coding upstream 102616 4386100 ~ 4388424 (-)
G847741 NA non-coding upstream 130696 4414180 ~ 4416442 (-)
G847740 NA non-coding upstream 133122 4416606 ~ 4419950 (-)
G846600 NA other downstream 962291 3267749 ~ 3300488 (-)
smyd4 smyd4 other downstream 980906 3280610 ~ 3307832 (-)
LOC110533269 LOC104929447 other downstream 1109556 3151322 ~ 3153275 (-)
LOC110534827 LOC106604014 other downstream 1185272 3071880 ~ 3079986 (-)
G846290 NA other downstream 1509676 2748953 ~ 2753103 (-)
G847774 NA other upstream 284328 4567812 ~ 4569190 (-)
G847843 NA other upstream 453045 4736529 ~ 4741588 (-)
G847861 NA other upstream 527464 4810948 ~ 4812182 (-)
G848149 NA other upstream 858393 5141877 ~ 5142471 (-)

Expression

LOC110533249(dlat) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110533249(dlat) Expression in each Bioproject

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LOC110533249(dlat) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network