LOC118966693


Basic Information

Item Value
gene id LOC118966693
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 5715285 ~ 5724923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053552.1
GTCTGTTTCACAACCATTCCTGGAAATCTTGCGATGCcgcgcctctgggtttagaaactctgtgattTGTTCTATAAAACAGGTTGTCAGACGCCAGTCTACATCTGGGTAGAGAAACATCCCATACATTCTGAAGTATGTGTTGTACTTGGCTTCTATTTTGAACATCTAATGGTGATTTTTGTTTGGTTGACATCCATCGGCAAACTTCGATGACTTAAGAGCCAAGGAGGAGGACGGATGAGAACAGCAGGCCAGTGGAGCACTTTGAACGGCAGCAGCTAGGGGCACATGGTAGGGAAGAGGAGGATTTAGGTGACCTAGACACAGGACCAAAACAAGTTAAGCTACCTCAGTATCCCCTTGGACATTCTGGATTGCAAAACTAAAGAGACCCAGCAGACAAGACACCGAGATAGATGGCAACAGAGGAGTAGATGAGccacaaaacacagagacagcaacacaaCAATAGGATATGATGCAGAGACACCAGAAGAGGAAAGACAAAGAGACTGTAACAAACAAGAACCTGAGACAGCAACACAACAATAGGATATGATGCAGAGACACCAAAAGAGGAAAGACAAAGAGACTGTAACAAACAAGAACCTGAGACAGCAACACAACAATAGGATATGATGCAGAGACACCAGAAGAGGAAAGACAAAGAGACTGTAACAAACAAGAACCTGAGACAGCAACACAACAATAGGATATGATGCAGAGACACCAGAAGAGGAAAGACAAAGAGACTGTAACAAATAAGAACCTGAGACAGCAACACAACAATAGGATATGATGCAGAGACACCAGAAGAACATCACAGAAGAGGATAGACAAAGAGACTGTAACAAACAAGAACCTGAGACAGCAACACAACAATAGGATATGATGCAGAGACACCAGAAGAGGAAAGACAAAGAGACTGTAACAAATAAGAACCTGAGACAGCAACACAACAATAGGATATGATGCAGAGACACCAGAAGAGGAAAGACAAAGAGACTGTAACAAACAAGAACCTGAGACAGCAACACAACAATAGGATATGATGCAGAGACACCAGAACAGGAAAGACAAAGACACTGTAACAAACAAGAACCTGACGAGCCTGACGAACAGACGAGGCaacagagaaagtgacagagtaGATGGAGAGTGAACAGAGgtatgatcctgttttgtttgttcctaTGTAGTTTTACTtagttttcactcagtcatattcacacacacagattcacgcatccctgcactttacatacacctcacATTATGATACATTCACACCTCATTCCTTTTTCTTTGTTTACAGTTAATTGTTTGGTTTgtaataaagaacctttttgattggcctatacctgttcgtgtcccctcatttttgccacaggctatgagccGGCCTGTGACACTAAGACACCAACAATCACGGACAGAACAGAGAGGtatgccagagggttaaat
>XR_005053551.1
TCACAACCATTCCTGGAAATCTTGCGATGCcgcgcctctgggtttagaaactctgtgattTGTTCTATAAAACAGGTTGTCAGACGCCAGTCTACATCTGGGTAGAGAAACATCCCATACATTCTGAAGTATGTGTTGTACTTGGCTTCTATTTTGAACATCTAATGGTGATTTTTGTTTGGTTGACATCCATCGGCAAACTTCGATGACTTAAGAAAGTCGGAGAACTACAAGATCGACAAGAGAATGGGGGCAGATTGGTCAAAAGATCGAGCGGATCAGGCAGAGAGAGACCTCGATCAAGCCAAAACTGATAAACAGAAAGCGGAGGAGGACAAACAGAAAGCGGAGGAGGACAAACAGAACATGGAGAAGGAAAAGAAAAAGACAGAAGAGGATTACAGGCAGCTCTTTGCTGAGAAAGTGAGAATGGAAACAGAACAAAAGATGGAAGAAAAACGAAGACAGGAGCTTAAGAAGGAAACTCTAAAAGTAATAGAACACAATAGACAGCGAGAGAAAAATGAAAAGACAAGAATTCAGCTGGAAAATGCAAAAGGAGATCAGAAAACTGTATGAAATGTATCCACATATTAAGAGACAAAGGCATAAACTGTTTAAATTATCCACATAATGAGTTATTGGACAAGGCACACAATCATTGTATACCTTTAATATCCACAATTGCGCTGCCTGTTTTATTTTCCCCAAATGATgtgcttaaagggatagttcacacaAATGACACAGTAGTTTAATAACCCTGTTAGCCGTTTTTGTTTACCTGGCTGCTGCCACCAAATGCTTTTCAAACCAATGCCTGTTAATATCTGAGAATCCTCTGTAGCTTTGCAATAAATAGATTCTATTGATG
>XR_005053553.1
TCTGTTTCACAACCATTCCTGGAAATCTTGCGATGCcgcgcctctgggtttagaaactctgtgattTGTTCTATAAAACAGGTTGTCAGACGCCAGTCTACATCTGGGTAGAGAAACATCCCATACATTCTGAAGTATGTGTTGTACTTGGCTTCTATTTTGAACATCTAATGGTGATTTTTGTTTGGTTGACATCCATCGGCAAACTTCGATGACTTAAGGTAGACCAGAAAAGCCACATCCCGAATTGGCAGATGAGCGGCAACCCTGATTAGAAGCACCTGCTGCTCAATGCTGTTTTgaattaaaataaaattgtaCCTAAACACTGAAGGCTGTAAAGAAACACAGAGGATGGTAGCAGTTATATTGTCTTAAGAAAGTCGGAGAACTACAAGATCGACAAGAGAATGGGGGCAGATTGGTCAAAAGATCGAGCGGATCAGGCAGAGAGAGACCTCGATCAAGCCAAAACTGATAAACAGAAAGCGGAGGAGGACAAACAGAAAGCGGAGGAGGACAAACAGAACATGGAGAAGGAAAAGAAAAAGACAGAAGAGGATTACAGGCAGCTCTTTGCTGAGAAAGTGAGAATGGAAACAGAACAAAAGATGGAAGAAAAACGAAGACAGGAGCTTAAGAAGGAAACTCTAAAAGTAATAGAACACAATAGACAGCGAGAGAAAAATGAAAAGACAAGAATTCAGCTGGAAAATGCAAAAGGAGATCAGAAAACTGTATGAAATGTATCCACATATTAAGAGACAAAGGCATAAACTGTTTAAATTATCCACATAATGAGTTATTGGACAAGGCACACAATCATTGTATACCTTTAATATCCACAATTGCGCTGCCTGTTTTATTTTCCCCAAATGATgtgcttaaagggatagttcacacaAATGACACAGTAGTTTAATAACCCTGTTAGCCGTTTTTGTTTACCTGGCTGCTGCCACCAAATGCTTTTCAAACCAATGCCTGTTAATATCTGAGAATCCTCTGTAGCTTTGCAATAAATAGATTCTATTGATG
>TU966871
GAAACATCCCATACATTCTGAAGTATGTGTTGTACTTGGCTTCTATTTTGAACATCTAATGGTGATTTTTGTTTGGTTGACATCCATCGGCAAACTTCGATGACTTAAGAAAGTCGGAGAACTACAAGATCGACAAGAGAATGGGGGCAGATTGGTCAAAAGATCGAGCGGATCAGGCAGAGAGAGACCTCGATCAAGCCAAAACTGATAAACAGAAAGCGGAGGAGGACAAACAGAAAGCGGAGGAGGACAAACAGAACATGGAGAAGGAAAAGAAAAAGACAGAAGAGGATTACAGGCAGCTCTTTGCTGAGAAAGTGAGAATGGAAACAGAACAAAAGATGGAAGAAAAACGAAGACAGGAGCTTAAGAAGGAAACTCTAAAAGTAATAGAACACAATAGACAGCGAGAGAAAAATGAAAAGACAAGAATTCAGCTGGAAAATGCAAAAGGAGATCAGAAAACTGTATGAAATGTATCCACATATTAAGAGACAAAGGCATAAACTGTTTAAATTATCCACATAATGAGTTATTGGACAAGGCACACAATCATTGTATACCTTTAATATCCACAATTGCGCTGCCTGTTTTATTTTCCCCAAATGATgtgcttaaagggatagtt

Function

NR:

description
101 kDa malaria antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053552.1 False 1467 mRNA 0.43 3 5715285 5724923
XR_005053551.1 False 874 mRNA 0.39 2 5719507 5724916
XR_005053553.1 False 1038 mRNA 0.40 3 5719507 5724922
TU966871 True 628 TUCP 0.39 2 5719647 5724810

Neighbor

gene id symbol gene type direction distance location
LOC110533273 LOC106591344 coding downstream 962 5706790 ~ 5714323 (-)
LOC118936905 LOC106603981 coding downstream 10573 5665150 ~ 5704712 (-)
LOC118936911 LOC106597397 coding downstream 50471 5661766 ~ 5664814 (-)
LOC110534831 LOC106594356 coding downstream 53735 5655338 ~ 5661550 (-)
LOC110534826 LOC106604001 coding downstream 215912 5482195 ~ 5499373 (-)
LOC110533276 LOC106591845 coding upstream 15559 5740482 ~ 5755444 (-)
LOC110533271 LOC106591845 coding upstream 61507 5786430 ~ 5796275 (-)
LOC118936906 LOC106603984 coding upstream 96842 5821765 ~ 5824354 (-)
LOC110533283 NA coding upstream 141125 5866048 ~ 5869520 (-)
LOC118937088 NA coding upstream 142036 5866959 ~ 5867037 (-)
G848555 NA non-coding downstream 11218 5703859 ~ 5704067 (-)
G848551 NA non-coding downstream 15070 5699926 ~ 5700215 (-)
G848548 NA non-coding downstream 26078 5689003 ~ 5689207 (-)
G848547 NA non-coding downstream 26917 5688039 ~ 5688368 (-)
G848508 NA non-coding downstream 92801 5618197 ~ 5622484 (-)
G848563 NA non-coding upstream 13771 5738694 ~ 5818818 (-)
G848522 NA non-coding upstream 39457 5764380 ~ 5801166 (-)
G848617 NA non-coding upstream 121480 5846403 ~ 5847334 (-)
G848624 NA non-coding upstream 139521 5864444 ~ 5864783 (-)
G848149 NA other downstream 572814 5141877 ~ 5142471 (-)
G847861 NA other downstream 903103 4810948 ~ 4812182 (-)
G847843 NA other downstream 973697 4736529 ~ 4741588 (-)
G847774 NA other downstream 1146095 4567812 ~ 4569190 (-)
G847740 NA other downstream 1295335 4416606 ~ 4419950 (-)
G848524 LOC106591845 other upstream 14961 5739884 ~ 5822028 (-)
G849438 hpd other upstream 1056700 6778916 ~ 6787520 (-)
G849536 NA other upstream 1289808 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 1355668 7080591 ~ 7308250 (-)
G849864 LOC106603950 other upstream 1715980 7400883 ~ 7443617 (-)
G848503 NA non-coding downstream 71067 5616048 ~ 5648580 (-)

Expression


Co-expression Network