znhit3 (znhit3)


Basic Information

Item Value
gene id znhit3
gene name znhit3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 6399723 ~ 6401419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617387.2
TCttttctttcccccccccccccaacacgtGTCTGttctgctagctagttagcagtcgACGCATGACAATTTTGTTCCACGTTTATTTTGTTTAAAATATTACAATCAAAATGCAGATCTGCAATGTGTGCAGTGGAGAGACACCCAAATACCGATGTCCGGCCTGTAGAATCAGATACTGCTCTCTCAGTTGTTACAAGACCCACAAGGCCAATGATACCTGCCAGCCCCTAAAACAGTCAGTCCCTCCTCCCGTTCAAGACCTAAATGGAGCATACAGCAATGTTTCAGCAGAGGATCCCTGGACCGTTGAAGATCTCCTTGATGATGACCAGACAGATAAAGTACCACTTCAGAGGCTACGGCGATTAGGCAAGTCGGAGGAGCTGAGAGAGCTGCTCCGAAACCCACATCTCCGTCAGCTGATGAGCTCTTTGGACGCGGCCGACAGCAAAGCAGACGCCATTAAGACCGCAATGCAAGAGCCTCTGTTTGTTGAGCTTTCCGATCAATGCTTGCAGATCGTTGAGAAAAacgattaaaaaaaaatgtacttgcAGACAGAGCCGAGCCGAATACACACCGAGTCCATAATTCATGTTCACTTTTCAATTTGACAAAAACAATTAAATCCTGTGTTTCTTTCTGTGTAAATATACAACTGTATACTTATTtgttaaatatttattttaactCGTCTTTGCAATACTGTGGTTACAACTAGCTCAGTCAGATCTTTATATAGCTGTACCAAGAACCCTTTGAAAcacctagctagctatgtttgaTAACACATTTGATCTGGGTATGGCTTTGAATACCCTTAATAAACAAACAAGATTGTTTAGTCAGTTCAAAATACAAACAATTCAAGGAAGGATTATACAAGCAGTgggttac

Function

symbol description
znhit3 Predicted to enable metal ion binding activity. Acts upstream of or within cerebellum development. Predicted to be part of pre-snoRNP complex. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in PEHO syndrome. Orthologous to human ZNHIT3 (zinc finger HIT-type containing 3).

NR:

description
zinc finger HIT domain-containing protein 3

GO: NA

KEGG:

id description
K23309 ZNHIT3; zinc finger HIT domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617387.2 True 900 mRNA 0.42 5 6399723 6401419

Neighbor

gene id symbol gene type direction distance location
pigw pigw coding downstream 17338 6379587 ~ 6382385 (-)
LOC110533288 ggnbp2 coding downstream 23211 6361892 ~ 6376512 (-)
sap30l LOC106603970 coding downstream 38672 6352797 ~ 6361051 (-)
larp1 LOC106603968 coding downstream 143050 6198522 ~ 6256673 (-)
LOC110533286 LOC106603967 coding downstream 223718 6152684 ~ 6176005 (-)
LOC110533295 LOC105008281 coding upstream 1807 6403217 ~ 6404336 (-)
LOC110533291 LOC106603975 coding upstream 28514 6429933 ~ 6457668 (-)
LOC110534837 LOC106603953 coding upstream 222844 6624263 ~ 6640847 (-)
LOC110519104 mtmr4 coding upstream 249908 6651327 ~ 6763741 (-)
LOC118966698 rnf43 coding upstream 407582 6809001 ~ 7034472 (-)
G849031 myo19 non-coding downstream 7347 6391729 ~ 6392376 (-)
G849025 NA non-coding downstream 21784 6377513 ~ 6377939 (-)
G848988 NA non-coding downstream 121817 6274898 ~ 6277906 (-)
G848989 NA non-coding downstream 123056 6275625 ~ 6276667 (-)
G848950 NA non-coding downstream 213510 6185888 ~ 6186213 (-)
G849042 NA non-coding upstream 22714 6424133 ~ 6424641 (-)
G849040 NA non-coding upstream 24832 6426251 ~ 6428124 (-)
G849055 NA non-coding upstream 30652 6432071 ~ 6449852 (-)
G849068 NA non-coding upstream 75014 6476433 ~ 6476659 (-)
G848524 LOC106591845 other downstream 577695 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 674913 5715285 ~ 5724923 (-)
G848149 NA other downstream 1257252 5141877 ~ 5142471 (-)
G847861 NA other downstream 1587541 4810948 ~ 4812182 (-)
G847843 NA other downstream 1658135 4736529 ~ 4741588 (-)
G849438 hpd other upstream 380204 6778916 ~ 6787520 (-)
G849536 NA other upstream 613312 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 679172 7080591 ~ 7308250 (-)
G849864 LOC106603950 other upstream 1039484 7400883 ~ 7443617 (-)
G850323 NA other upstream 1339883 7741302 ~ 7746624 (-)

Expression


Co-expression Network