LOC110533295 (LOC105008281)


Basic Information

Item Value
gene id LOC110533295
gene name LOC105008281
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 6403217 ~ 6404336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474940.2
CCCTGATtgtgtgtagtggctttgctgccctgcgaagaagaagaaaacaaggaGAACACCGCCTTGTAAAACGAAGGGATCTTGACACGGGCCAATCAGAGTCGTCTCTTGATCATGTGACGTTAGGAATATAAACAGTGAGTGACATCATCTGTTTACTTCAAGCTTTTGCACGGCTGATAGACTTCATTAGAGTACTGCACTAGTAATATTTGCCTCTCCTAAAATTATGGCAACAGACATCGAAAGATTTGCTTTTTTCGAAGAAGCACACTACGACCAATACGATTACTACAATTTAGCCGAATATTCATGTCACGCTGGTGGAAAAGGTAGAACCAAGAGAGAAATCGGACTGAACACCAATCGCCATATCCCTGCTGGACACGAGAGAAAAATTGCTGAAAAATATCAAAACAGTGAACTTAAACGCAGGAGAACCAAAAGTTTAATATCTTGATGGACTCTGTGTCAGATCTCAAACCTAGTTGAAGATTGAACTGGAACATGATCCAAATGTGTATTTTTGCCTTTCCTGACCCTTATGACCCAATGAAAGGAGTTGACTGGGACTGGCCTGCCAGGAAACACACCTTGGCAGTTAGTTTAGAGTGCACTCCATTTCCACATGTTGCACCCCTGTTACTGGACATAACTGGTCTTCAGTTACAGCAGTGTGCAAGAATAAACGGTTTTAAATAGTTGAAGACATCTCTAGCACTATTATGCTGTTATGATACTGTTTGGTTTAAAGTGTAAAAATTACTGTGTTGTGAATAAAAAGCAGAATAAAGAGATGACGATTTAAAAGAG
>TU967471
ACTTCAAGCTTTTGCACGGCTGATAGACTTCATTAGAGTACTGCACTAGTAATATTTGCCTCTCCTAAAATTATGGCAACAGACATCGAAAGATTTGCTTTTTTCGAAGAAGCACACTACGACCAATACGATTACTACAATTTAGCCGAATATTCATGTCACGCTGGTGGAAAAGGTAGAACCAAGAGAGAAATCGGACTGAACACCAATCGCCATATCCCTGCTGGACACGAGAGAAAAATTGCTGAAAAATATCAAAACAGTGAACTTAAACGCAGGAGAACCAAAAGTTTAATATCTTGATGGACTCTGTGTCAGATCTCAAACCTAGTTGAAGATTGAACTGGAACATGATCCAAATGTGTATTTTTGCCTTTCCTGACCCTTATGACCCAATGAAAGGAGTTGACTGGGACTGGCCTGCCAGGAAACACACCTTGGCAGTTAGTTTAGAGTGCACTCCATTTCCACATGTTGCACCCCTGTTACTGGACATAACTGGTCTTCAGTTACAGCAGTGTGCAAGAATAAACGGTTTTAAATAGTTGAAGACATCTCTAGCACTATTATGCTGTTATGATACTGTTTGGTTTAAAGTGTAAAAATTACTGTGTTGTGAATAAAAAGCAGAATAAAGAGATGACGATTTAAAAGAGGTTTGAAGT
>TU967472
ACTTCAAGCTTTTGCACGGCTGATAGACTTCATTAGAGTACTGCACTAGTAATATTTGCCTCTCCTAAAATTATGGCAACAGACATCGAAAGATTTGCTTTTTTCGAAGAAGCACACTACGACCAATACGATTACTACAATTTAGCCGAATATTCATGTCACGCTGGTGGAAAAGGTAGAACCAAGAGAGAAATCGGACTGAACACCAATCGCCATATCCCTGCTGGACACGAGAGAAAAATTGCTGAAAAATATCAAAACAGTGAACTTAAACGCAGGAGAACCAAAAGTTTAATATCTTGATGGACTCTGTGTCAGATCTCAAACCTAGTTGAAGATTGAACTGGAACATGATCCAAATGTGTATTTTTGCCTTTCCTGACCCTTATGACCCAATGAAAGGAGTTGACTGGGACTGGCCTGCCAGGAAACACACCTTGGCAGTTAGTTTAGAGTGCACTCCATTTCCACATGTTGCACCCCTGTTACTGGACATAACTGGTCTTCAGTTACAGCAGTGTGCAAGAATAAACGGTTTTAAATAGTTGAAGACATCTCTAGCACTATTATGCTGTTATGATACTGTTTGGTTTAAAGTGTAAAAATTACTGTGTTGTGAATAAAAAGCAGAATAAAGAGATGAC
>TU967474
TTAGGAATATAAACAGTGAGTGACATCATCTGTTTACTTCAAGCTTTTGCACGGCTGATAGACTTCATTAGAGTACTGCACTAGTAATATTTGCCTCTCCTAAAATTATGGCAACAGACATCGAAAGATTTGCTTTTTTCGAAGAAGCACACTACGACCAATACGATTACTACAATTTAGCCGAATATTCATGTCACGCTGGTGGAAAAGGTAGAACCAAGAGAGAAATCGGACTGAACACCAATCGCCATATCCCTGCTGGACACGAGAGAAAAATTGCTGAAAAATATCAAAACAGTGAACTTAAACGCAGGAGAACCAAAAGTTTAATATCTTGATGGACTCTGTGTCAGATCTCAAACCTAGTTGAAGATTGAACTGGAACATGATCCAAATGTGTATTTTTGCCTTTCCTGACCCTTATGACCCAATGAAAGGAGTTGACTGGGACTGGCCTGCCAGGAAACACACCTTGGCAGTTAGTTTAGAGTGCACTCCATTTCCACATGTTGCACCCCTGTTACTGGACATAACTGGTCTTCAGTTACAGCAGTGTGCAAGAATAAACGGTTTTAAATAGTTGAAGACATCTCTAGCACTATTATGCTGTTATGATACTGTTTGGTTTAAAGTGTAAAAATTACTGTGTTGTGAATAAAAAGCAGAATAAAGAGATGAC
>TU967473
ACTTCAAGCTTTTGCACGGCTGATAGACTTCATTAGAGTACTGCACTAGTAATATTTGCCTCTCCTAAAATTATGGCAACAGACATCGAAAGATTTGCTTTTTTCGAAGAAGCACACTACGACCAATACGATTACTACAATTTAGCCGAATATTCATGTCACGCTGGTGGAAAAGGTAGAACCAAGAGAGAAATCGGACTGAACACCAATCGCCATATCCCTGCTGGACACGAGAGAAAAATTGCTGAAAAATATCAAAACAGTGAACTTAAACGCAGGAGAACCAAAAGTTTAATATCTTGATGGACTCTGTGTCAGATCTCAAACCTAGTTGAAGATTGAACTGGAACATGATCCAAATGTGTATTTTTGCCTTTCCTGACCCTTATGACCCAATGAAAGGAGTTGACTGGGACTGGCCTGCCAGGAAACACACCTTGGCAGTTAGTTTAGAGTGCACTCCATTTCCACATGTTGCACCCCTGTTACTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474940.2 False 813 mRNA 0.40 2 6403226 6404336
TU967471 False 665 lncRNA 0.39 2 6403217 6404179
TU967472 False 644 lncRNA 0.39 2 6403238 6404179
TU967474 False 679 lncRNA 0.39 2 6403238 6404214
TU967473 True 492 lncRNA 0.42 2 6403390 6404179

Neighbor

gene id symbol gene type direction distance location
znhit3 znhit3 coding downstream 1807 6399723 ~ 6401419 (-)
pigw pigw coding downstream 20841 6379587 ~ 6382385 (-)
LOC110533288 ggnbp2 coding downstream 26714 6361892 ~ 6376512 (-)
sap30l LOC106603970 coding downstream 42175 6352797 ~ 6361051 (-)
larp1 LOC106603968 coding downstream 146553 6198522 ~ 6256673 (-)
LOC110533291 LOC106603975 coding upstream 25597 6429933 ~ 6457668 (-)
LOC110534837 LOC106603953 coding upstream 219927 6624263 ~ 6640847 (-)
LOC110519104 mtmr4 coding upstream 246991 6651327 ~ 6763741 (-)
LOC118966698 rnf43 coding upstream 404665 6809001 ~ 7034472 (-)
LOC118966699 NA coding upstream 598623 7002865 ~ 7006459 (-)
G849031 myo19 non-coding downstream 10850 6391729 ~ 6392376 (-)
G849025 NA non-coding downstream 25287 6377513 ~ 6377939 (-)
G848988 NA non-coding downstream 125320 6274898 ~ 6277906 (-)
G848989 NA non-coding downstream 126559 6275625 ~ 6276667 (-)
G848950 NA non-coding downstream 217013 6185888 ~ 6186213 (-)
G849042 NA non-coding upstream 19797 6424133 ~ 6424641 (-)
G849040 NA non-coding upstream 21915 6426251 ~ 6428124 (-)
G849055 NA non-coding upstream 27735 6432071 ~ 6449852 (-)
G849068 NA non-coding upstream 72097 6476433 ~ 6476659 (-)
G849073 NA non-coding upstream 82181 6486517 ~ 6486728 (-)
G848524 LOC106591845 other downstream 581198 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 678416 5715285 ~ 5724923 (-)
G848149 NA other downstream 1260755 5141877 ~ 5142471 (-)
G847861 NA other downstream 1591044 4810948 ~ 4812182 (-)
G847843 NA other downstream 1661638 4736529 ~ 4741588 (-)
G849438 hpd other upstream 377287 6778916 ~ 6787520 (-)
G849536 NA other upstream 610395 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 676255 7080591 ~ 7308250 (-)
G849864 LOC106603950 other upstream 1036567 7400883 ~ 7443617 (-)
G850323 NA other upstream 1336966 7741302 ~ 7746624 (-)

Expression


Co-expression Network