LOC110534837 (LOC106603953)


Basic Information

Item Value
gene id LOC110534837
gene name LOC106603953
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 6624263 ~ 6640847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989580.1
AGGCAGATCCACAGCTCTCCAACCCCTTACCATGAAAGCACTGTGGCACAGTAAGTTCAAAGACATACAGTGAAACTcaagtgtctctgtctgtcaacaAATCAATGTGCCAAAGGTGTCGGCTTTTAGGTGTTAACATGATGACCGGTAGATTATGCTGGTCAACTATTAAAAGAAAACGAACAGAGAAGCCCATCATATCGTTTTCGGAATTGGATTTTGAAAACAGCTCTGTTATATCAAGCAATCCCCATTCATTCTTCCACGTGCACCTGCACCCAATACGGAGTTCAGCACGAGCCAATGAGAGAGACTTGCGTGCTTGTCGCAACGAGAAGCAGCATGAGCTCCAACAACAAACTGCGGAAAACGGTCAATCTCTACAAACGTTTTCGGGGAGAAACACACGAGAACTCAGATCTCATACAGATTGGTGCTACCAGTCCCAACATACCTGTGACACCCCTTGTAATGGACCTGAGAAGTGGGATCATGTTAACAGAGTCTGTGCAGGTGATAACCAATCCCCCATCAACATCGTCCACAGGAAGACCGTACCAGACATACGCCTCACACCCTTCCAGTTTAAACAGTACCAGGATTCCTTCCAAGGCGCGATCAAAAACAATGGACACTCTGTGCAGGTGAACGTGCCTCACGATGCCTATGTGATTGGTGGAGACCTGGAGACGCCCTATAAGGCAGTGCAGTTCCACCTGCACTGGGGCAAGAACGGAGGACCGGGGTCAGAACACACCATCGACGGAGAGCAGTACCCCATGGAGCTGCATATTGTTCACATGAAACAGCAGCACTCCAACTTGGGAGATGCCCTGAAAGATCCATCCGGAGTTGCAGTTCTGGGATTTTTCTACGAGGAATCTCTCAGTGAAAACCGAAAATATGACCCCATTGTAAAAGCTCTCCAGAGCATCAAGACGACTCATGCTCAAGCCACTCTGAGTGCTGTGTCTCTGGAGCAGCTGATTCCTCCCCAGCAGAACCTGACCAACTACTACCGTTACAAAGGCTCCCTCACCACCCCCAACTGCACTGAGTCCGTGGTCTGGACCGTGTTTGAGAAGCCCATTCCTCTCAGCAAAAACCAGCTGCGTAAGTTTTCAGAACTCCAGTTTAAGGACGGCAAGGACATGGTGGACACCTTCCGGCCGGTGCAGCCCCTGAACCGCCGCGTAGTGTACAGGTCTGGAGGCGCAGTGGCACTGGCTAGCGCCGCGCTCCTCATGGCTTCCGTCGCCATGGCGATGGGACTGTCACAGCCCAACTAGAGGAAGGCAGAGCGAgccgcaccaccaccaccaccaccaccagcatgAACACCATGAGTTCTCAGAACCAACCGCCAAATAAACGAACTAAACTAAACTACAGCATCAATCAACCAACATCCATGCCCTAACCTTTGAAAACTCTCAGCCTGAAAACCAACATGCCCCCAGACCCCTTTACAATGACCTATAGGGATTAATTCCTTCTCAAACTTAAGTATTAGAgtcttacagttctacagttctacagttctaaagTTCATAAGTTCATAAGTTCATAAGTTCATAAGTTCATAAGTTCAACATCCCTCCCTGTTCAATGTTGGGTCAATTTAGAGTCCTCAGTCTAAAGTTACAATACAAAATGTGAGGACCCTCTGCTCTGTGTTCAGGTGGTCGGGCTGCTGCTATAGGCTTAACATAGAGGCCTATACATCCATGACCTGATTGGCACTGGACTCGCAAGTGATCATGTTCCTGAATGGAACGTGTGGATGGTGGCTAGTCGCTATTAATAGCTAGCAGTCATAAATACTTTCCAGTCTCCAGATTAAAAccgaggagaagagagaaatgcCATGGCCTGATCTTTCCGTCTGCATTGCCAAGTCCATGAACTCCCGTTATCACAACCACCGTCACCGGTTAGGTGAGCATTCTATTGCCACCCACCACGGGCCCCGGGGCAACATTATCTAAGGGGTAAGGAGGACGGAGGTCCCCATAGCAACACGTGAATCACTCACCCAGGGGCCCAGGGGTAACTAAAAGACACAGGCTGACCCATGAGGAACGCAACACACCATAGTGAGTGTTAAAGTGTTCAGAGGCTGGACTGTCCCTGTCCCGactcccaacccccccccccccccccagtcacacATGAGCTCCaccaggaggaggtggaggaagatgATGATGCGGAGTTGGAGTGATGAGCTTTCCGGCTCACTCCAAAACTGCTCTGACAATAGGTCATGAGGCGATTGACAGCGGCAAATTTGAACACACAGAAGAAGACTAGAAGCTGAACACACAGAAGAAGACTAGAAGCTGAACACACAGAAGAAGACTAGAAGCTGAACACACATAAGAAGACTAGAAGCTGAACTAGGGagtggacacagtgaatatttaAAATAACCAACTaattgatagatagatagattaattgattgatttattgattgacaGATAGATTAATTGATTGCTTGATTGATTGACAGATTGATTGATACTTATTTGACCAAATGTCATTTATAGTTTCATGACCAATTATCCATATCCAAATGTTTAGCATGGACCtgcatgttgtctctctctctcatgctgtaACAGAGCAAGAGAACCACAGAGACTGTACACACTTTCCACCTAAGCCACTTCAGAAACTGTATACTTCTCCACCAGCTCGGCCAATCAAACTGTCCCTTTTGAGAACACAAGACTTGTGTTCACAGGCTTATACTACGGGGTCTCGAATGCACTGAATGTTACCTACTGTGAATTATTTACTCCGATAGGATCAAGACAAGACTGATGTACAGATTGAACTAGGAATATTAATTATATAAATGTTCCGTTTGTTTCATAGCGTACCAATGTTATATTACATTTATATACTGTGTAATGTGTACACGtatttgtgtactgtatgtgtattgatatatatatatatatatatatataaggacaTACTGTTGATGTTATTTATATACAGCTTGGTGTTTAAAAGTTTATATAGAATGATTGTTTCTGCCTTGGCCAAGTCTCCCTTGAAaaaaagagactctgggtctcaatgggcttttcctggttaaataaaagttcaataaaTAAAcaactatctatatatatatgtcaGAAAGAAAACCAATCCCCCCCCAAAAGGGGAAATGGATTACATTAGCAAGTTGTTTCCGACCAATTAAAAATATGTTTTACTCTTGAAATGAGATATGTTCAAAAGTATTGAACAATATAGTTTGTTTGGTTGTAATGCTTGACAATGTTATACGTGATGTGGAGAATGGTGTTCCGATTGAATAAACTACTGACATGCCTTTTTCTAA
>XM_036989581.1
GACCCTCTTGGAAGAAGAATGCGATCACATTGAAAAATAAATAACTCATTGTGTTGCCCTGCGCCGCTCGAACCTGACAGAGACGCTCTCCAAAATGCAGCAACATCTTATCCTATCTATTTTTCTGGCATTCTTTTTAAAAATCTGCACCGGTGCAGATTGGTGCTACCAGTCCCAACATACCTGTGACACCCCTTGTAATGGACCTGAGAAGTGGGATCATGTTAACAGAGTCTGTGCAGGTGATAACCAATCCCCCATCAACATCGTCCACAGGAAGACCGTACCAGACATACGCCTCACACCCTTCCAGTTTAAACAGTACCAGGATTCCTTCCAAGGCGCGATCAAAAACAATGGACACTCTGTGCAGGTGAACGTGCCTCACGATGCCTATGTGATTGGTGGAGACCTGGAGACGCCCTATAAGGCAGTGCAGTTCCACCTGCACTGGGGCAAGAACGGAGGACCGGGGTCAGAACACACCATCGACGGAGAGCAGTACCCCATGGAGCTGCATATTGTTCACATGAAACAGCAGCACTCCAACTTGGGAGATGCCCTGAAAGATCCATCCGGAGTTGCAGTTCTGGGATTTTTCTACGAGGAATCTCTCAGTGAAAACCGAAAATATGACCCCATTGTAAAAGCTCTCCAGAGCATCAAGACGACTCATGCTCAAGCCACTCTGAGTGCTGTGTCTCTGGAGCAGCTGATTCCTCCCCAGCAGAACCTGACCAACTACTACCGTTACAAAGGCTCCCTCACCACCCCCAACTGCACTGAGTCCGTGGTCTGGACCGTGTTTGAGAAGCCCATTCCTCTCAGCAAAAACCAGCTGCGTAAGTTTTCAGAACTCCAGTTTAAGGACGGCAAGGACATGGTGGACACCTTCCGGCCGGTGCAGCCCCTGAACCGCCGCGTAGTGTACAGGTCTGGAGGCGCAGTGGCACTGGCTAGCGCCGCGCTCCTCATGGCTTCCGTCGCCATGGCGATGGGACTGTCACAGCCCAACTAGAGGAAGGCAGAGCGAgccgcaccaccaccaccaccaccaccagcatgAACACCATGAGTTCTCAGAACCAACCGCCAAATAAACGAACTAAACTAAACTACAGCATCAATCAACCAACATCCATGCCCTAACCTTTGAAAACTCTCAGCCTGAAAACCAACATGCCCCCAGACCCCTTTACAATGACCTATAGGGATTAATTCCTTCTCAAACTTAAGTATTAGAgtcttacagttctacagttctacagttctaaagTTCATAAGTTCATAAGTTCATAAGTTCATAAGTTCATAAGTTCAACATCCCTCCCTGTTCAATGTTGGGTCAATTTAGAGTCCTCAGTCTAAAGTTACAATACAAAATGTGAGGACCCTCTGCTCTGTGTTCAGGTGGTCGGGCTGCTGCTATAGGCTTAACATAGAGGCCTATACATCCATGACCTGATTGGCACTGGACTCGCAAGTGATCATGTTCCTGAATGGAACGTGTGGATGGTGGCTAGTCGCTATTAATAGCTAGCAGTCATAAATACTTTCCAGTCTCCAGATTAAAAccgaggagaagagagaaatgcCATGGCCTGATCTTTCCGTCTGCATTGCCAAGTCCATGAACTCCCGTTATCACAACCACCGTCACCGGTTAGGTGAGCATTCTATTGCCACCCACCACGGGCCCCGGGGCAACATTATCTAAGGGGTAAGGAGGACGGAGGTCCCCATAGCAACACGTGAATCACTCACCCAGGGGCCCAGGGGTAACTAAAAGACACAGGCTGACCCATGAGGAACGCAACACACCATAGTGAGTGTTAAAGTGTTCAGAGGCTGGACTGTCCCTGTCCCGactcccaacccccccccccccccccagtcacacATGAGCTCCaccaggaggaggtggaggaagatgATGATGCGGAGTTGGAGTGATGAGCTTTCCGGCTCACTCCAAAACTGCTCTGACAATAGGTCATGAGGCGATTGACAGCGGCAAATTTGAACACACAGAAGAAGACTAGAAGCTGAACACACAGAAGAAGACTAGAAGCTGAACACACAGAAGAAGACTAGAAGCTGAACACACATAAGAAGACTAGAAGCTGAACTAGGGagtggacacagtgaatatttaAAATAACCAACTaattgatagatagatagattaattgattgatttattgattgacaGATAGATTAATTGATTGCTTGATTGATTGACAGATTGATTGATACTTATTTGACCAAATGTCATTTATAGTTTCATGACCAATTATCCATATCCAAATGTTTAGCATGGACCtgcatgttgtctctctctctcatgctgtaACAGAGCAAGAGAACCACAGAGACTGTACACACTTTCCACCTAAGCCACTTCAGAAACTGTATACTTCTCCACCAGCTCGGCCAATCAAACTGTCCCTTTTGAGAACACAAGACTTGTGTTCACAGGCTTATACTACGGGGTCTCGAATGCACTGAATGTTACCTACTGTGAATTATTTACTCCGATAGGATCAAGACAAGACTGATGTACAGATTGAACTAGGAATATTAATTATATAAATGTTCCGTTTGTTTCATAGCGTACCAATGTTATATTACATTTATATACTGTGTAATGTGTACACGtatttgtgtactgtatgtgtattgatatatatatatatatatatatataaggacaTACTGTTGATGTTATTTATATACAGCTTGGTGTTTAAAAGTTTATATAGAATGATTGTTTCTGCCTTGGCCAAGTCTCCCTTGAAaaaaagagactctgggtctcaatgggcttttcctggttaaataaaagttcaataaaTAAAcaactatctatatatatatgtcaGAAAGAAAACCAATCCCCCCCCAAAAGGGGAAATGGATTACATTAGCAAGTTGTTTCCGACCAATTAAAAATATGTTTTACTCTTGAAATGAGATATGTTCAAAAGTATTGAACAATATAGTTTGTTTGGTTGTAATGCTTGACAATGTTATACGTGATGTGGAGAATGGTGTTCCGATTGAATAAACTACTGACATGCCTTTTTCTAA
>TU967843
ttttcatgAGTTCATGCCAAGATTAATGTACCCTTTTGTATGTAACTTGTGCATCGCAGATACAATTTGGTTCAATGCTCTATATTCATCCCATGTCTTGTCCTGTTGGCATGTACCAACACCAATGTTTTGCTAAGATTAATATAAGTTCTGTGTAGCATATACAATTTGTCTCCTTTTGTTTCAGGGCTCAATGTTTCTGATTGTAATGCTGTGCTGTTGCAGATGCTCAAGCCACTCTGAGTGCTGTGTCTCTGGAGCAGCTGATTCCTCCCCAGCAGAACCTGACCAACTACTACCGTTACAAAGGCTCCCTCACCACCCCCAACTGCACTGAGTCCGTGGTCTGGACCGTGTTTGAGAAGCCCATTCCTCTCAGCAAAAACCAGCTGCGTAAGTTTTCAGAACTCCAGTTTAAGGACGGCAAGGACATGGTGGACACCTTCCGGCCGGTGCAGCCCCTGAACCGCCGCGTAGTGTACAGGTCTGGAGGCGCAGTGGCACTGGCTAGCGCCGCGCTCCTCATGGCTTCCGTCGCCATGGCGATGGGACTGTCACAGCCCAACTAGAGGAAGGCAGAGCGAgccgcaccaccaccaccaccaccaccagcatgAACACCATGAGTTCTCAGAACCAACCGCCAAATAAACGAACTAAACTAAACTACAGCATCAATCAACCAACATCCATGCCCTAACCTTTGAAAACTCTCAGCCTGAAAACCAACATGCCCCCAGACCCCTTTACAATGACCTATAGGGATTAATTCCTTCTCAAACTTAAGTATTAGAgtcttacagttctacagttctacagttctaaagTTCATAAGTTCATAAGTTCATAAGTTCATAAGTTCATAAGTTCAACATCCCTCCCTGTTCAATGTTGGGTCAATTTAGAGTCCTCAGTCTAAAGTTACAATACAAAATGTGAGGACCCTCTGCTCTGTGTTCAGGTGGTCGGGCTGCTGCTATAGGCTTAACATAGAGGCCTATACATCCATGACCTGATTGGCACTGGACTCGCAAGTGATCATGTTCCTGAATGGAACGTGTGGATGGTGGCTAGTCGCTATTAATAGCTAGCAGTCATAAATACTTTCCAGTCTCCAGATTAAAAccgaggagaagagagaaatgcCATGGCCTGATCTTTCCGTCTGCATTGCCAAGTCCATGAACTCCCGTTATCACAACCACCGTCACCGGTTAGGTGAGCATTCTATTGCCACCCACCACGGGCCCCGGGGCAACATTATCTAAGGGGTAAGGAGGACGGAGGTCCCCATAGCAACACGTGAATCACTCACCCAGGGGCCCAGGGGTAACTAAAAGACACAGGCTGACCCATGAGGAACGCAACACACCATAGTGAGTGTTAAAGTGTTCAGAGGCTGGACTGTCCCTGTCCCGactcccaacccccccccccccccccagtcacacATGAGCTCCaccaggaggaggtggaggaagatgATGATGCGGAGTTGGAGTGATGAGCTTTCCGGCTCACTCCAAAACTGCTCTGACAATAGGTCATGAGGCGATTGACAGCGGCAAATTTGAACACACAGAAGAAGACTAGAAGCTGAACACACAGAAGAAGACTAGAAGCTGAACACACAGAAGAAGACTAGAAGCTGAACACACATAAGAAGACTAGAAGCTGAACTAGGGagtggacacagtgaatatttaAAATAACCAACTaattgatagatagatagattaattgattgatttattgattgacaGATAGATTAATTGATTGCTTGATTGATTGACAGATTGATTGATACTTATTTGACCAAATGTCATTTATAGTTTCATGACCAATTATCCATATCCAAATGTTTAGCATGGACCtgcatgttgtctctctctctcatgctgtaACAGAGCAAGAGAACCACAGAGACTGTACACACTTTCCACCTAAGCCACTTCAGAAACTGTATACTTCTCCACCAGCTCGGCCAATCAAACTGTCCCTTTTGAGAACACAAGACTTGTGTTCACAGGCTTATACTACGGGGTCTCGAATGCACTGAATGTTACCTACTGTGAATTATTTACTCCGATAGGATCAAGACAAGACTGATGTACAGATTGAACTAGGAATATTAATTATATAAATGTTCCGTTTGTTTCATAGCGTAC

Function

NR:

description
LOW QUALITY PROTEIN: carbonic anhydrase 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989580.1 False 3361 mRNA 0.45 8 6624263 6639773
XM_036989581.1 False 3090 mRNA 0.45 8 6624263 6640847
TU967843 True 2168 lncRNA 0.46 2 6624736 6627674

Neighbor

gene id symbol gene type direction distance location
LOC110533291 LOC106603975 coding downstream 166595 6429933 ~ 6457668 (-)
LOC110533295 LOC105008281 coding downstream 219927 6403217 ~ 6404336 (-)
znhit3 znhit3 coding downstream 222844 6399723 ~ 6401419 (-)
pigw pigw coding downstream 241878 6379587 ~ 6382385 (-)
LOC110533288 ggnbp2 coding downstream 247751 6361892 ~ 6376512 (-)
LOC110519104 mtmr4 coding upstream 10480 6651327 ~ 6763741 (-)
LOC118966698 rnf43 coding upstream 168154 6809001 ~ 7034472 (-)
LOC118966699 NA coding upstream 362112 7002865 ~ 7006459 (-)
LOC118966700 NA coding upstream 367073 7007920 ~ 7014182 (-)
LOC118966702 NA coding upstream 368593 7009440 ~ 7011035 (-)
G849389 NA non-coding downstream 2546 6621498 ~ 6621717 (-)
G849385 NA non-coding downstream 7604 6615968 ~ 6616659 (-)
G849360 NA non-coding downstream 30252 6593322 ~ 6594011 (-)
G849350 NA non-coding downstream 44613 6579038 ~ 6579650 (-)
G849349 NA non-coding downstream 45910 6578139 ~ 6578353 (-)
G849395 NA non-coding upstream 1527 6642374 ~ 6850126 (-)
G849368 NA non-coding upstream 7927 6648774 ~ 6650438 (-)
G849404 NA non-coding upstream 42090 6682937 ~ 6684519 (-)
G849375 NA non-coding upstream 48713 6689560 ~ 6690333 (-)
G849406 NA non-coding upstream 58435 6699282 ~ 6701227 (-)
G848524 LOC106591845 other downstream 802235 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 899453 5715285 ~ 5724923 (-)
G848149 NA other downstream 1481792 5141877 ~ 5142471 (-)
G847861 NA other downstream 1812081 4810948 ~ 4812182 (-)
G847843 NA other downstream 1882675 4736529 ~ 4741588 (-)
G849438 hpd other upstream 140776 6778916 ~ 6787520 (-)
G849536 NA other upstream 373884 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 439744 7080591 ~ 7308250 (-)
G849864 LOC106603950 other upstream 800056 7400883 ~ 7443617 (-)
G850323 NA other upstream 1100455 7741302 ~ 7746624 (-)

Expression


Co-expression Network