LOC118966698 (rnf43)


Basic Information

Item Value
gene id LOC118966698
gene name rnf43
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 6809001 ~ 7034472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989594.1
CGCTACAGCCGATCCAATGATCGTTCTCCAGCGGCGACTGGCCGGGCTCTGGCCGTGGCTGCTCATGGCGGCCCTGCAGGTGGTGTTTGGCCAGACGGGCCTGGAGCTGGCGGCGGCCGTCGAGACGGAGCGCTCGGCCCTCAGGGCTGTCATCAAGGTGACACTGCTGAGACCCGAGCCAACGGGGAAACTCATCACTCTGGAAGGGCTGTTTGTCGGAGGGAGCGCCGGCTCTGCAGAGGGGAAGCTCATGCAGtcccACCCTCTGTCCCTGTGCAACACCAGTGAAGATGAGCGCCAGGAGTCAGACTTCATCAGCATCGTCAAGCTGGAGAGCCCGGAGCGCAAGGTGCCTCAGTGTCTACCCCTGCTGCACAAGgctcgccTGGCGCTGGAGAGAGGGGCTCAGGCTGTCATCTTTGATGTCACCGATGATGTCAACGCTAAGTTCCAGctGCATGAGTCAGATTCCCTGCTGCGTCCGGTGGTGCTGATGCAGGCTGAGGATGCTGAGACGCTGATGGAACTGGTCAACAGGAACGAGGAGGCCAGCGTCCGCATCGACATCAAGAGGGAGGACCCCAAATGGGCCCACTATGATGTTGTTGTCCTGCTCACTATAGTCCTTGCTATTCTGGCCATCGTTACGATCTTTGCTTTCCGGTATCGATGCAAGTCCAGCAGAACCTGGGACTCAGTCCACCAGCAGACGATGCGAGCCATCAGTCGTCTGGAGACGCGGATGTACAGTTCTCAGGGCTGCGGGGGCTCACAGCGCCACCGTGGGGGCTGGGGGTCTAATAGCAGCTCTAACTCCAGCCCCGTCTGTGCCATCTGTCTGGATGAGTTCCTGGAGGGACAGGACCTGAGGATCATCTCGTGTGCTCATGAGTTCCATAAGGAGTGTGTGGACCCCTGGCTACTGCAGCACCGCACCTGTCCCCTCTGCATGCACAACATCATGGGTTCAGAGCTGTCTGGACAGCCACGGAGGACCAGACTACAGCAGACCCCCGAGCACAGCCAGGGTTTCCTCCACACCCACCCCATCCCCTTCTCCATGAGGCCTCACTACCCCCGCGGTCCCTCTGGTCCATACCCCTCCCTGGGCCACTATAGCGGCTCCCCGCCTCTGGACCCCCAGACTCACCGCTTCCTCCCTAGTCGGCCCCTGGGCCCTGGTTGCGGATACCTCCACCCTGCAGAGGGCCCCGGAAGGCCCCACAGAGCCGGGGGCAGCTGCAAGATAGCAGGCCACCCTATGGATACCCACTACGGCCCCGGGCCCCGCCGCTCCTGCCACGCCTACCGCTCCGGCTGCCCTTCCCAGCGCAGCGCCTCCAGTTCCAGGCTCCACCACGCCCCCTCCTCTGCTCCCCGCGCCTCCGCAGGGGGAGCCCACAGCCGGGGGAACGAGGGGGGCAGCTGCTCTGGGGGGAGCTACCGGACAGAGCACAGTGGCTACCTGGCTGATGGGCCGGCCAGTGACTCTAGCTCTGGCCCCTGTCACGGCTCCTCCAGTGACTCGGTCCTCAACTGTACTGACGTGTCCCTGCAGGGTGTGTATGGTAGCTGGTCCACGTTCCGCAGCTCCCTGAGCAGTGACTATGATCCGTTTGTGTACTACGGGCCGGGACCGGGACCGACAGGCCGCAGGGACAGCATGGAGGCAGGGGCCCAGAGACCCAGGTCCCTGGACTCAGTGgtgaacagagacagaggacgaggaggaggaggaagaagaggagggtgcTCTGAGGAACAGCAGCAGGCTGTGTTTAGCCACATCCACTACCACCGCCACAGACACCACCACTAccgagaggaaggggagagggagcacGCCCAGGGCCAGGGGCCAGGCAGGGGGTCGGACGAGGAGCTGGGGGCTACTGCTTTTGGCAGTAGCCCCCCGGCTCTGGACAAAGATTCCCCAGTGTGCCCTCTGAAAGACAGCCCCTGTCACTGCCCTAAGGCAGACCACACAGACAGTAGAGGGGCCCATGGCCACGGAACAGAGGGTCAGGGCCATGACCTCAGCCACCCCTCAGGCCTCCCTCCAGTCCTGGTAACCCCAGCCCCCTTACCACCCCCACCAACCTGCTGTCACCAGGACCACAGCCACGGGGGCCACCCCCACCGGAGGGCGGGCCGGCTGGGCGACTGTGTGCTCGACGGCCCCTCAGTGCGTTTCCAACAGAACCTGGACCTGCAGGACGACTGTAGCATCCACATCCACTATGACCAGGGCTACTGCTGCCCCCCTCCCGACCTGCCCCCCGCTCTGCTCTCCATGCCTGTGCCCCTCATCCTGGACTCTGGAGGAATGAGGCCCCTGGGGGGCCTAGAGGACTGGCCCTGCTGTGGAGGGCCCCACCATGTGGTGTGGCAGAAGCGGGTGCAGCAGGCCCACTCTGAGCCCCAGCTGCTGGGGCCCGGGCTTGGGGTCCCTATGGACATAACCCCACCCCCTTCCAGCAGGCGCCACCACGGTCCCCACAGCCCAGGGGACGACCGCAACACAGACTTATGTTTATACTGCCAAACACTACACAATAATCAGGGATCCGAGGAGGAGTCCGGCGTGTGAGGACTCGCGAGTTGCATCCCCAACTTCACGCTGCTACGTACACAGGAGCCGGAACGGACAAACACATCATCGCGCGGCCATGTTTCTCAAGTCTTCCAAATAATTCCACATTTAATAGCTGCATTCAGACTACACTTCCCAGAATCCCCCAGTCAGTGCTCAGAGTTCCGTCTGTCCCACAACGATCAAAATGAGTCTACGAGATTCTGATTGTTTTGAAGTTTATTTATTTTGACCATCAATTCAAACAATAAGCACAAGTCATGTATGGATGTCAAATTGCTCTAATTCATTGTTGAATTCCAGTATTTCAATGTGTTTGATTGGGAGTTTTGTTGTTGCTTAGTGATTGTGTTTCAAGATGGAGACTGACTGGGAGATgctggaaatgtttttttgttgttgttttgtttttcgtcttgtttttattttgttttgtaaaTTACAGGAATAATTCAATACCAACAAGTTCCCAGGTTGCCTTAGTGACCACAAGGAATGATCACTGCTCAGGGCTTGAGCCTCGATTCACATCACGACATTCCCCAACTATCTCCCTCATTAGAAATCACACGGACATATTGGATGTCTGATTCCTTGAGTGGTTGATTGAGTACTTAATCAATTATACTATGAGGTACTACTCAGTAATACTTAATATCCTTAAAGTCCTTTATTTGTGTAGAAACAGAATGTAGACGAGCATTGGATCATGTACGACACCCATACATGGAGGTTTCTTGCTCTTTCCAGCCTAACTCAAATCAGATTCAGAAATGTTTCCCTTCGGGGTGGGTTTTACTAAGGTACTCAGAGCTACGGAAAAGAGACAAGAAACTTATCATTAGGGGAGAACAGTGATTTTCTTAGCTGGACCTACAAGCAGTGAGCATCCTGAAAGGTCATCCTGAGAGGTCATCCTGAAAGGTCATCCTGAAAGGTCTTCCTGAGAGGTCATTAGAGGCTAGTATGGGGACTTGTGTTGGTTCATTCAATAATGGCAGCTGTTTCCATCACATTTAATGTGTTTTTTGGTTCggtaaaaacatatattttttttattttgtaattgTGTTTTTCATCGTTAAAAGAAAGAACCAGACTGATCTATGTTATTacaagctatttttgttttgCTCATGTCATTTCTCATGTTGCCAGTGGTTACGTAGTATGTTTGACCTGAGCGCTGGTTTGGTGGCCAGTGAAGGATGGGAGGGGCCCTCCACACAAACCTGGGTTCAAACTGTATTTGACATATTTCAAATACTGTAGCTGTGCTTGATTCAGCTTACCTGGCTCCATGGGACCAATGGTATAGTCCTAAAAAATgtaaaccccgcccatctggcgtGCACTCCAGTAAGGATAAAATATGCAAATGCTCAAGTATGTGAAATATTTAAAATTCTATTTGAACCTAAAGGGAGGTCTGCCACCAGAACAGCAGCGTGGGTGGAGCTTCGCTCGGCTCAGAAAGGACATGAACCATGTCGTCTGCTCttcacccctgacccctgacctttatCCCCATCACCTATTACACAACCCTATCGTTGTCCACCAGCAAGGATATTGTCTCCTTTCCATATCCCATCTACCAGCAGCTATAGCTCACCAGGGGTGCCCTTATCTTAAACATTGTAGCAAAATATTATATACAGAATTACTATGTAATAACTGGAGGAAAGCCATGATAATTCATAATTCATTCAACTTTGGGAACATAACATTATTCACGACCAAACATTTACCGAACAAACCTGCGGCCTTAAATAGAAGCCTGGTGCCGCTCAGTCAGTCAAGCCCTTTCCCTGAATGTCTCACTTGGATCCAACATCCCAGGATATTAAATGTGTGtagttatacagtaccagtcaaaagtttggacacgcctacacattcaagggtttttctgtatttttactattttctacattgtacaataatagtgaag

Function

symbol description
rnf43 Enables frizzled binding activity and ubiquitin-protein transferase activity. Involved in Wnt receptor catabolic process; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Is integral component of plasma membrane.

NR:

description
E3 ubiquitin-protein ligase RNF43-like

GO: NA

KEGG:

id description
K15694 RNF43; E3 ubiquitin-protein ligase RNF43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989594.1 True 4547 mRNA 0.54 8 6809001 7034472

Neighbor

gene id symbol gene type direction distance location
LOC110519104 mtmr4 coding downstream 45260 6651327 ~ 6763741 (-)
LOC110534837 LOC106603953 coding downstream 168154 6624263 ~ 6640847 (-)
LOC110533291 LOC106603975 coding downstream 351333 6429933 ~ 6457668 (-)
LOC110533295 LOC105008281 coding downstream 404665 6403217 ~ 6404336 (-)
znhit3 znhit3 coding downstream 407582 6399723 ~ 6401419 (-)
hsf5 LOC106603959 coding upstream 1726 7036198 ~ 7041922 (-)
LOC110533297 LOC106603951 coding upstream 46119 7080591 ~ 7308250 (-)
LOC100136697 LOC100136697 coding upstream 422832 7457304 ~ 7469939 (-)
LOC110533304 LOC106603946 coding upstream 447142 7481614 ~ 7670778 (-)
LOC110533309 NA coding upstream 640307 7674779 ~ 7682828 (-)
G849438 hpd non-coding downstream 21481 6778916 ~ 6787520 (-)
G849412 NA non-coding downstream 77134 6731177 ~ 6731867 (-)
G849369 NA non-coding downstream 96719 6711570 ~ 6712282 (-)
G849406 NA non-coding downstream 107774 6699282 ~ 6701227 (-)
G849375 NA non-coding downstream 118668 6689560 ~ 6690333 (-)
G849550 NA non-coding upstream 23391 7057863 ~ 7058091 (-)
G849560 NA non-coding upstream 27930 7062402 ~ 7062635 (-)
G849666 NA non-coding upstream 43490 7077962 ~ 7106112 (-)
G849686 NA non-coding upstream 73197 7107669 ~ 7129273 (-)
G849688 NA non-coding upstream 79762 7114234 ~ 7114559 (-)
G848524 LOC106591845 other downstream 986973 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 1084191 5715285 ~ 5724923 (-)
G848149 NA other downstream 1666530 5141877 ~ 5142471 (-)
G847861 NA other downstream 1996819 4810948 ~ 4812182 (-)
G849864 LOC106603950 other upstream 406431 7400883 ~ 7443617 (-)
G850323 NA other upstream 706830 7741302 ~ 7746624 (-)
G850763 NA other upstream 1397059 8431531 ~ 8432041 (-)
G852802 NA other upstream 3427784 10462256 ~ 10462650 (-)

Expression


Co-expression Network