LOC118966699


Basic Information

Item Value
gene id LOC118966699
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 7002865 ~ 7006459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053555.1
agtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgTAGTAATGCTGTCTAGTGGTAGGTGGGGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggagtagtaatgctgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgTAGTAATGCTGTCTAGTGGTAGGTGGGGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggagTAGTA
>XR_005053556.1
agtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgTAGTAATGCTGTCTAGTGGTAGGTGGGGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggagtagtaatgctgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgTAGTAATGCTGTCTAGTGGTAGgtggggtagtaatgctgtctagtgggaggtggggtagtaatgctgt
>XR_005053557.1
agtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgTAGTAATGCTGTCTAGTGGTAGGTGGGGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggggtagtaatgctgtctggtgagagatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggagtagtaatgctgtctagtgggaggtggagtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggag
>TU968087
GTCTTCTGAAGGAGTTGTGCATGTTTCTGGTAAGAGatactgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgTAGTAATGCTGTCTAGTGGTAGGTGGGGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggagtagtaatgctgtctagtgggaggtggagtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggtgTAGTAATGCTGTCTAGTGGTAGGTGGGGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggagTAGTAATGCcgtctggtgggaggtggggtagtaatgctgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggggtagtaatgctgtctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053555.1 False 727 mRNA 0.50 3 7002959 7006459
XR_005053556.1 False 626 mRNA 0.50 4 7002980 7006459
XR_005053557.1 False 649 mRNA 0.50 3 7005298 7006459
TU968087 True 762 lncRNA 0.50 4 7002865 7006264

Neighbor

gene id symbol gene type direction distance location
LOC110519104 mtmr4 coding downstream 239218 6651327 ~ 6763741 (-)
LOC110534837 LOC106603953 coding downstream 362112 6624263 ~ 6640847 (-)
LOC110533291 LOC106603975 coding downstream 545291 6429933 ~ 6457668 (-)
LOC110533295 LOC105008281 coding downstream 598623 6403217 ~ 6404336 (-)
znhit3 znhit3 coding downstream 601540 6399723 ~ 6401419 (-)
LOC118966700 NA coding upstream 1461 7007920 ~ 7014182 (-)
LOC118966702 NA coding upstream 2981 7009440 ~ 7011035 (-)
hsf5 LOC106603959 coding upstream 29739 7036198 ~ 7041922 (-)
LOC110533297 LOC106603951 coding upstream 74132 7080591 ~ 7308250 (-)
LOC100136697 LOC100136697 coding upstream 450845 7457304 ~ 7469939 (-)
G849531 NA non-coding downstream 784 6998606 ~ 7002175 (-)
G849528 NA non-coding downstream 9895 6992179 ~ 6993064 (-)
G849524 NA non-coding downstream 27577 6974991 ~ 6975382 (-)
G849448 NA non-coding downstream 91753 6851241 ~ 6911206 (-)
G849378 NA non-coding downstream 133340 6840798 ~ 6869619 (-)
G849538 NA non-coding upstream 10072 7016531 ~ 7017036 (-)
G849550 NA non-coding upstream 51404 7057863 ~ 7058091 (-)
G849560 NA non-coding upstream 55943 7062402 ~ 7062635 (-)
G849666 NA non-coding upstream 71503 7077962 ~ 7106112 (-)
G849686 NA non-coding upstream 101210 7107669 ~ 7129273 (-)
G849438 hpd other downstream 215439 6778916 ~ 6787520 (-)
G848524 LOC106591845 other downstream 1180931 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 1278149 5715285 ~ 5724923 (-)
G848149 NA other downstream 1860488 5141877 ~ 5142471 (-)
G847861 NA other downstream 2190777 4810948 ~ 4812182 (-)
G849536 NA other upstream 8272 7014731 ~ 7015222 (-)
G849864 LOC106603950 other upstream 434444 7400883 ~ 7443617 (-)
G850323 NA other upstream 734843 7741302 ~ 7746624 (-)
G850763 NA other upstream 1425072 8431531 ~ 8432041 (-)
G849534 NA non-coding upstream 179 7006443 ~ 7012811 (-)

Expression


Co-expression Network