LOC118966700


Basic Information

Item Value
gene id LOC118966700
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 7007920 ~ 7014182 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053559.1
tttcactctctgtctctctctttcactctctctgtctctctctctgtcactctttctGTTTCAGTGcaaatggtttaaaaaaaaaaatccatctcAATCTCTGACTCAGTGAGAGACTAAGATTAAGTGCACAATCATGCACCCACGTTCATATTGGAGTCAGACTAACTCAGTTTACAGTCTAAACCCCATGTCAGGGCCAGTACAAGTaaaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtttcaTGTGGATGAACTATGAAGGAGTCTGTAGTCCTGACCTCTGTGATCGTTTACTCTGTTAACCGCAGGATCAAAGTCACTCAGATCTGGGAGCGGGCGGTCATGGCAACAAAAGCCATATTGTAAACCCTGATCAGACAAAATACTTATATAGTCTCCACAGTCACATGGTCACCTCCTCCAAACATCCAGCAGAAACATTTTGTCCTTTTTCTGACTGTTCTGTTGCCTTTATCTCAGAAAGCCTttagtttctctcctctctgcctctataATGGTGCTCAGCTCACCTCAACCTGTCCTGGTTAACAAAGGCttcaagacagacacacacacacacacacacacacactgccccaacGCCCATTTACCAGCAGCACCTGAAAAGGTGTCATTTGTTCGTAAAGACATTATTGTCCTCTGAAGATTAGTTACCATGACATCGTCTCTGCTTACACTTAAACAGACGCTGTTTAATTTGGAAGGAGAAGAAAACACTTACGCTCCGTCGCTTCCAAAGAAAACACAGTTACAAGTCACAACGTGGAGCGAGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggagtagtaatgctgtctagtgggaggtggagTAGTAatactgtctagtgggagGTGGAGTAGTAatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggggtagcggTTCATATAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGagatgctgtctagtgggaggtggggtagtaatactgtctggtgagagatgctgtctagtgggaggtggggtagtaatgctgtctggtgagagatgctgtctagtgggaggtggggtagcggTTCATATAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGagatgctgtctagtgggaggtggagTAGTAatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggggtagcggTTCATATAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGagatgctgtctagtgggaggtggagTAGTAatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggggtagcggTTCATATAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGagatgctgtctagtgggaggtggggtagtaatactgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGagatgctgtctagtgggaggt
>XR_005053561.1
tttcactctctgtctctctctttcactctctctgtctctctctctgtcactctttctGTTTCAGTGcaaatggtttaaaaaaaaaaatccatctcAATCTCTGACTCAGTGAGAGACTAAGATTAAGTGCACAATCATGCACCCACGTTCATATTGGAGTCAGACTAACTCAGTTTACAGTCTAAACCCCATGTCAGGGCCAGTACAAGTaaaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtttcaTGTGGATGAACTATGAAGGAGTCTGTAGTCCTGACCTCTGTGATCGTTTACTCTGTTAACCGCAGGATCAAAGTCACTCAGATCTGGGAGCGGGCGGTCATGGCAACAAAAGCCATATTGTAAACCCTGATCAGACAAAATACTTATATAGTCTCCACAGTCACATGGTCACCTCCTCCAAACATCCAGCAGAAACATTTTGTCCTTTTTCTGACTGTTCTGTTGCCTTTATCTCAGAAAGCCTttagtttctctcctctctgcctctataATGGTGCTCAGCTCACCTCAACCTGTCCTGGTTAACAAAGGCttcaagacagacacacacacacacacacacacacactgccccaacGCCCATTTACCAGCAGCACCTGAAAAGGTGTCATTTGTTCGTAAAGACATTATTGTCCTCTGAAGATTAGTTACCATGACATCGTCTCTGCTTACACTTAAACAGACGCTGTTTAATTTGGAAGGAGAAGAAAACACTTACGCTCCGTCGCTTCCAAAGAAAACACAGTTACAAGTCACAACGTGGAGCGAGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctggtgagagatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGT
>XR_005053562.1
tttcactctctgtctctctctttcactctctctgtctctctctctgtcactctttctGTTTCAGTGcaaatggtttaaaaaaaaaaatccatctcAATCTCTGACTCAGTGAGAGACTAAGATTAAGTGCACAATCATGCACCCACGTTCATATTGGAGTCAGACTAACTCAGTTTACAGTCTAAACCCCATGTCAGGGCCAGTACAAGTaaaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtttcaTGTGGATGAACTATGAAGGAGTCTGTAGTCCTGACCTCTGTGATCGTTTACTCTGTTAACCGCAGGATCAAAGTCACTCAGATCTGGGAGCGGGCGGTCATGGCAACAAAAGCCATATTGTAAACCCTGATCAGACAAAATACTTATATAGTCTCCACAGTCACATGGTCACCTCCTCCAAACATCCAGCAGAAACATTTTGTCCTTTTTCTGACTGTTCTGTTGCCTTTATCTCAGAAAGCCTttagtttctctcctctctgcctctataATGGTGCTCAGCTCACCTCAACCTGTCCTGGTTAACAAAGGCttcaagacagacacacacacacacacacacacacactgccccaacGCCCATTTACCAGCAGCACCTGAAAAGGTGTCATTTGTTCGTAAAGACATTATTGTCCTCTGAAGATTAGTTACCATGACATCGTCTCTGCTTACACTTAAACAGACGCTGTTTAATTTGGAAGGAGAAGAAAACACTTACGCTCCGTCGCTTCCAAAGAAAACACAGTTACAAGTCACAACGTGGAGCGAGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctggtgagagatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGT
>XR_005053558.1
tttcactctctgtctctctctttcactctctctgtctctctctctgtcactctttctGTTTCAGTGcaaatggtttaaaaaaaaaaatccatctcAATCTCTGACTCAGTGAGAGACTAAGATTAAGTGCACAATCATGCACCCACGTTCATATTGGAGTCAGACTAACTCAGTTTACAGTCTAAACCCCATGTCAGGGCCAGTACAAGTaaaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtttcaTGTGGATGAACTATGAAGGAGTCTGTAGTCCTGACCTCTGTGATCGTTTACTCTGTTAACCGCAGGATCAAAGTCACTCAGATCTGGGAGCGGGCGGTCATGGCAACAAAAGCCATATTGTAAACCCTGATCAGACAAAATACTTATATAGTCTCCACAGTCACATGGTCACCTCCTCCAAACATCCAGCAGAAACATTTTGTCCTTTTTCTGACTGTTCTGTTGCCTTTATCTCAGAAAGCCTttagtttctctcctctctgcctctataATGGTGCTCAGCTCACCTCAACCTGTCCTGGTTAACAAAGGCttcaagacagacacacacacacacacacacacacactgccccaacGCCCATTTACCAGCAGCACCTGAAAAGGTGTCATTTGTTCGTAAAGACATTATTGTCCTCTGAAGATTAGTTACCATGACATCGTCTCTGCTTACACTTAAACAGACGCTGTTTAATTTGGAAGGAGAAGAAAACACTTACGCTCCGTCGCTTCCAAAGAAAACACAGTTACAAGTCACAACGTGGAGCGAGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTT
>XR_005053560.1
tttcactctctgtctctctctttcactctctctgtctctctctctgtcactctttctGTTTCAGTGcaaatggtttaaaaaaaaaaatccatctcAATCTCTGACTCAGTGAGAGACTAAGATTAAGTGCACAATCATGCACCCACGTTCATATTGGAGTCAGACTAACTCAGTTTACAGTCTAAACCCCATGTCAGGGCCAGTACAAGTaaaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtttcaTGTGGATGAACTATGAAGGAGTCTGTAGTCCTGACCTCTGTGATCGTTTACTCTGTTAACCGCAGGATCAAAGTCACTCAGATCTGGGAGCGGGCGGTCATGGCAACAAAAGCCATATTGTAAACCCTGATCAGACAAAATACTTATATAGTCTCCACAGTCACATGGTCACCTCCTCCAAACATCCAGCAGAAACATTTTGTCCTTTTTCTGACTGTTCTGTTGCCTTTATCTCAGAAAGCCTttagtttctctcctctctgcctctataATGGTGCTCAGCTCACCTCAACCTGTCCTGGTTAACAAAGGCttcaagacagacacacacacacacacacacacacactgccccaacGCCCATTTACCAGCAGCACCTGAAAAGGTGTCATTTGTTCGTAAAGACATTATTGTCCTCTGAAGATTAGTTACCATGACATCGTCTCTGCTTACACTTAAACAGACGCTGTTTAATTTGGAAGGAGAAGAAAACACTTACGCTCCGTCGCTTCCAAAGAAAACACAGTTACAAGTCACAACGTGGAGCGAGTAGCGGTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgtagtaatgctgtctagtgggaggtggggtagcggTTCATAGAGAGAGTCATCTTCTGAAGGAGTTGTGCATGTTTCTGGTGAGAGatactgtctagtgggaggtggggtagtaatgctgtctagtgggaggtggtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053559.1 False 1892 mRNA 0.47 7 7007920 7014182
XR_005053561.1 False 1251 mRNA 0.46 4 7012444 7014182
XR_005053562.1 False 1331 mRNA 0.46 4 7012444 7014182
XR_005053558.1 False 1364 mRNA 0.46 3 7012450 7014182
XR_005053560.1 True 1183 mRNA 0.46 3 7012551 7014182

Neighbor

gene id symbol gene type direction distance location
LOC118966699 NA coding downstream 1461 7002865 ~ 7006459 (-)
LOC110519104 mtmr4 coding downstream 244179 6651327 ~ 6763741 (-)
LOC110534837 LOC106603953 coding downstream 367073 6624263 ~ 6640847 (-)
LOC110533291 LOC106603975 coding downstream 550252 6429933 ~ 6457668 (-)
LOC110533295 LOC105008281 coding downstream 603584 6403217 ~ 6404336 (-)
hsf5 LOC106603959 coding upstream 22016 7036198 ~ 7041922 (-)
LOC110533297 LOC106603951 coding upstream 66409 7080591 ~ 7308250 (-)
LOC100136697 LOC100136697 coding upstream 443122 7457304 ~ 7469939 (-)
LOC110533304 LOC106603946 coding upstream 467432 7481614 ~ 7670778 (-)
LOC110533309 NA coding upstream 660597 7674779 ~ 7682828 (-)
G849533 NA non-coding downstream 2305 7003230 ~ 7005615 (-)
G849531 NA non-coding downstream 5745 6998606 ~ 7002175 (-)
G849528 NA non-coding downstream 14856 6992179 ~ 6993064 (-)
G849524 NA non-coding downstream 32538 6974991 ~ 6975382 (-)
G849538 NA non-coding upstream 2349 7016531 ~ 7017036 (-)
G849550 NA non-coding upstream 43681 7057863 ~ 7058091 (-)
G849560 NA non-coding upstream 48220 7062402 ~ 7062635 (-)
G849666 NA non-coding upstream 63780 7077962 ~ 7106112 (-)
G849686 NA non-coding upstream 93487 7107669 ~ 7129273 (-)
G849438 hpd other downstream 220400 6778916 ~ 6787520 (-)
G848524 LOC106591845 other downstream 1185892 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 1283110 5715285 ~ 5724923 (-)
G848149 NA other downstream 1865449 5141877 ~ 5142471 (-)
G847861 NA other downstream 2195738 4810948 ~ 4812182 (-)
G849536 NA other upstream 549 7014731 ~ 7015222 (-)
G849864 LOC106603950 other upstream 426721 7400883 ~ 7443617 (-)
G850323 NA other upstream 727120 7741302 ~ 7746624 (-)
G850763 NA other upstream 1417349 8431531 ~ 8432041 (-)

Expression


Co-expression Network