hsf5 (LOC106603959)


Basic Information

Item Value
gene id hsf5
gene name LOC106603959
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 7036198 ~ 7041922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989595.1
accttAGGTTTAAAATCAGTGACAGCTCTGCGAGAGCTGCCTCCAAAAACAAGATTAATGACGGAAAGAAGAAAAAACGCTAACCTGCGTAAAGTACCAATATATTAAACCGTAATTCAACTCTAGTAATGGTGTCTACAAATACACTGAAACTGATTCTGAATGTGTTATAAAAACAGACCCTCTTTTTTTTCCTCAACTCGGGAAAACTCGTGAACGTCCATAGCGCGAGCTTAGTCTTTGATTCACCATCGCGCTCGAGGatgttggaatgttttttttttcgtGGAATTTGAACGGATTCTAAATCAACTGTTCCGGAATATTTTCAACGGTTCTGAGGGAGATTGATCAAAGCTATTGCAAAAATATGGAGCTCGAAGAGGAACGCCTCACCATCCCCATCAATCCCAACAATTTCCCAGCGAAATTGTGGCGTTTGGTGAATAACCCCAAAAATCGATCGATACGTTGGGATCCCTGTGGTGAGGGTTTGATAATCGACCAGCAGCTATTTGAATCAGAGCTGCTGTCACCCCAGAAACAAACGTTTGACACCACTGACCTTTTCAAAACAACCAACTTTACAAGCTTCAACCGCCAGCTGAATCTTTATGGGTTCAGGAAGGTGGTCCATGGCCCCGGGGCCTCGGAGAAGAATGATGTCTCATCTCCGATGGATGGGATAAAACACCACTTCCACAACCCGAACTTCAAACAAGATCATCCCGAACTGCTGGTGAATCTTAAGAGGCTGACAAGCAAAAACAAGGCGAAGATGGAAGCTGGCCTAGAAGTGAACTGCCGGCCCCCAGCAAATCGTTTCCACCGACTCATGGCaaatggtgatggtggtgaggagagagttaaAGTAGATAAAAGAGGTTCCATGTTTGTTGGTCAGGTAAAACGTCCATCTCCTTACCAACAGTACCACCAAAGCAGAACCCAGCCCATGAAGGACTATGATCGGACCCCTATCCCACCCCGCGGCTGGATCATGGGTCATGGGGATGCCCCCTCCCCCAGCACCTTCTACACAGACAAGGGAATCCCCATATCTGTCATCCACCGGTTCCCTTCAGACACTTCCTGCACTGTGCAGTCCAGTCCGACTACTGTGCACATCCAGCAGGGTTCACAAAGTCTGGCAAACAGCTTGATCCCTCACCATGCTCAGTACCGACCTGGATTCTATTCCCCTGcATCAGTGTGCCAATGCTGCCCCCCAGGCTCAATGAACTCGGACTGCCATAGTGCCCACCAGACAACTCCCTCATATTCCCATTACAGCTATTACCAGCCAAACTGTCCTGTGGGCTTTCTGTATCCTGGCAATCAAAACCAGGACTGGCAGAGCAGTGAAACCCAGGAGACCAAGAAGAGCGATGTCAACctggacacagtcttccagctagTGGACGAGTTGCACCACAATTCCCCCAAAATACGCATGGTCAAAGTGGAGACCCCAGAGCGCCAGCAGCCGGTcctgtccacctctacatcatcagGGCCCCAGCCCATCACCACCATACACAGCTCCCCTCACACAGTCACTGTCTCCTCCCAGCTTGACTCCTCTTTTAACTCCAGCCCAGTGACTTCACGCGGGCCCATCATTATAGCAGTCCCGGGGAACGTTCCTCCTCAGGGAATAGCCATCACTGTCGGTGGTCCCAAGGCTGAGCAGCCAGTGAAGAAGGAGGACAAACCAGTATCTGTGGATGCCTATCAGAAGTGCCCTGAGGAAGCATCAGAGTACATCACCAAGGTGAAGGAGATCCAGGTGCTGGACTCAGACGTCTGCAGTGTTCTACATGATGTTACTGTCTGCAGCCTCAGCCTGGAGAACAAGCACCAGTCAGCGAACTAAATATCCTGATCTGAACTTGTTGGTTGAAGTGGCATGCAAGCAAGAATGTTGACCATAGTCGGACCAGGATGTCCCAAGTTTTCAGTTTTGCTACTCATGCTCAAGTCTGAATTTGCTGTAGCTTCTTGTTGAAATATGTTTACCTATGTTACTTGAATGTCACTgataaagaaatatatattttcctgATAGTACACATATTGGACATTGTACATAGTTCAGCCCTGTTCtaatttattcttatttataTGATAACCTTTACAGCATTTTAATTGGCATATGACAATTTTATTCTGAATGCTTAATCTTGGAATTAATTAATGCATACCAAGATTTATTTGTCATTTTTAGGTTAAAGAACAAGTACCTTTTAATGTTTATTCCTCATTTGTTTTTAGTTTGACACCAAAAAAGTTTGTCTGTTTTAACCGTTCattatttttaaaataatttctGACTTCTGGACATGATATAATTGGTTTATAATGTTAAAAGATTATTATGATTAAAATGTGATATAATTCA
>XM_036989596.1
accttAGGTTTAAAATCAGTGACAGCTCTGCGAGAGCTGCCTCCAAAAACAAGATTAATGACGGAAAGAAGAAAAAACGCTAACCTGCGTAAAGTACCAATATATTAAACCGTAATTCAACTCTAGTAATGGTGTCTACAAATACACTGAAACTGATTCTGAATGTGTTATAAAAACAGACCCTCTTTTTTTTCCTCAACTCGGGAAAACTCGTGAACGTCCATAGCGCGAGCTTAGTCTTTGATTCACCATCGCGCTCGAGGatgttggaatgttttttttttcgtGGAATTTGAACGGATTCTAAATCAACTGTTCCGGAATATTTTCAACGGTTCTGAGGGAGATTGATCAAAGCTATTGCAAAAATATGGAGCTCGAAGAGGAACGCCTCACCATCCCCATCAATCCCAACAATTTCCCAGCGAAATTGTGGCGTTTGGTGAATAACCCCAAAAATCGATCGATACGTTGGGATCCCTGTGGTGAGGGTTTGATAATCGACCAGCAGCTATTTGAATCAGAGCTGCTGTCACCCCAGAAACAAACGTTTGACACCACTGACCTTTTCAAAACAACCAACTTTACAAGCTTCAACCGCCAGCTGAATCTTTATGGGTTCAGGAAGGTGGTCCATGGCCCCGGGGCCTCGGAGAAGAATGATGTCTCATCTCCGATGGATGGGATAAAACACCACTTCCACAACCCGAACTTCAAACAAGATCATCCCGAACTGCTGGTGAATCTTAAGAGGCTGACAAGCAAAAACAAGGCGAAGATGGAAGCTGGCCTAGAAGTGAACTGCCGGCCCCCAGCAAATCGTTTCCACCGACTCATGGCaaatggtgatggtggtgaggagagagttaaAGTAGATAAAAGAGGTTCCATGTTTGTTGGTCAGGTAAAACGTCCATCTCCTTACCAACAGTACCACCAAAGCAGAACCCAGCCCATGAAGGACTATGATCGGACCCCTATCCCACCCCGCGGCTGGATCATGGGTCATGGGGATGCCCCCTCCCCCAGCACCTTCTACACAGACAAGGGAATCCCCATATCTGTCATCCACCGGTTCCCTTCAGACACTTCCTGCACTGTGCAGTCCAGTCCGACTACTGTGCACATCCAGCAGGGTTCACAAAGTCTGGCAAACAGCTTGATCCCTCACCATGCTCAGTACCGACCTGGATTCTATTCCCCTGcATCAGTGTGCCAATGCTGCCCCCCAGGCTCAATGAACTCGGACTGCCATAGTGCCCACCAGACAACTCCCTCATATTCCCATTACAGCTATTACCAGCCAAACTGTCCTGTGGGCTTTCTGTATCCTGGCAATCAAAACCAGGACTGGCAGAGCAGTGAAACCCAGGAGACCAAGAAGAGCGATGTCAACctggacacagtcttccagctagTGGACGAGTTGCACCACAATTCCCCCAAAATACGCATGGTCAAAGTGGAGACCCCAGAGCGCCAGCAGCCGGTcctgtccacctctacatcatcagGGCCCCAGCCCATCACCACCATACACAGCTCCCCTCACACAGTCACTGTCTCCTCCCAGCTTGACTCCTCTTTTAACTCCAGCCCAGTGACTTCACGCGGGCCCATCATTATAGCAGTCCCGGGGAACGTTCCTCCTCAGGGAATAGCCATCACTGTCGGTGGTCCCAAGGCTGAGCAGCCAGTGAAGAAGGAGGACAAACCAGTATCTGTGGATGCCTATCAGAAGGAGATGGATCATGCTGTGATTTCCCCAGTGCCCTGAGGAAGCATCAGAGTACATCACCAAGGTGAAGGAGATCCAGGTGCTGGACTCAGACGTCTGCAGTGTTCTACATGATGTTACTGTCTGC

Function

NR:

description
heat shock factor protein 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989595.1 False 2401 mRNA 0.45 7 7036198 7041922
XM_036989596.1 True 1865 mRNA 0.50 6 7037706 7041922

Neighbor

gene id symbol gene type direction distance location
LOC118966698 rnf43 coding downstream 1726 6809001 ~ 7034472 (-)
LOC118966700 NA coding downstream 22016 7007920 ~ 7014182 (-)
LOC118966702 NA coding downstream 25163 7009440 ~ 7011035 (-)
LOC118966699 NA coding downstream 29739 7002865 ~ 7006459 (-)
LOC110519104 mtmr4 coding downstream 272457 6651327 ~ 6763741 (-)
LOC110533297 LOC106603951 coding upstream 38669 7080591 ~ 7308250 (-)
LOC100136697 LOC100136697 coding upstream 415382 7457304 ~ 7469939 (-)
LOC110533304 LOC106603946 coding upstream 439692 7481614 ~ 7670778 (-)
LOC110533309 NA coding upstream 632857 7674779 ~ 7682828 (-)
LOC110533307 LOC106603944 coding upstream 642967 7684889 ~ 7693572 (-)
G849538 NA non-coding downstream 19162 7016531 ~ 7017036 (-)
G849534 NA non-coding downstream 23387 7006443 ~ 7012811 (-)
G849533 NA non-coding downstream 30583 7003230 ~ 7005615 (-)
G849531 NA non-coding downstream 34023 6998606 ~ 7002175 (-)
G849550 NA non-coding upstream 15941 7057863 ~ 7058091 (-)
G849560 NA non-coding upstream 20480 7062402 ~ 7062635 (-)
G849666 NA non-coding upstream 36040 7077962 ~ 7106112 (-)
G849686 NA non-coding upstream 65747 7107669 ~ 7129273 (-)
G849688 NA non-coding upstream 72312 7114234 ~ 7114559 (-)
G849536 NA other downstream 20976 7014731 ~ 7015222 (-)
G849438 hpd other downstream 248678 6778916 ~ 6787520 (-)
G848524 LOC106591845 other downstream 1214170 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 1311388 5715285 ~ 5724923 (-)
G848149 NA other downstream 1893727 5141877 ~ 5142471 (-)
G849864 LOC106603950 other upstream 398981 7400883 ~ 7443617 (-)
G850323 NA other upstream 699380 7741302 ~ 7746624 (-)
G850763 NA other upstream 1389609 8431531 ~ 8432041 (-)
G852802 NA other upstream 3420334 10462256 ~ 10462650 (-)

Expression


Co-expression Network