LOC110533307 (LOC106603944)


Basic Information

Item Value
gene id LOC110533307
gene name LOC106603944
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 7684889 ~ 7693572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989601.1
TGGTTTAGACCGTGTGATCACTTCCGGTTCAAAGTTTGAGGAGGTCACGGTGTCCTTCCACACGTGTGTTTCCAGGCATAACTAGTACTCGCATTACAGTAGCTGGTAACTGGAACTTGGGGCTTATCAAACcattgtattttttttcatttatttactaGTCAAATTGACCAACCTATAATCATGCTAAAGATGCTTTCCCGAGCGGTGACTACCGCAGTCCGAATTTCTACATCCACAATGTCCTCGACTGGTGCTCTCCATCCTCTTGCCAGATCGGCGTTATGCTCTCCAAACTCGGGAACAATCCGGCCGTTCACCCGGTCTCTCTGGGTGATGAGCAATAATGGTGCAGCATCGGGGTACCGACCGAAACTCTTGGGTTCAAAAGGACCGAGTCCTGTATCCTGTGAATGTGTGTCGCTACATACGGAAGGAGACAAAGCCTTTGGAGATTTCCTGTCTGATGAAACGAAAGAAGAGAAGAAAATTCAGAAAAGCAAGACTCTTCCCAAGATGTCTGGAGGGTGGGAGCTAGAGCAGAACGGCACAGAAGCCAAACTCATCAGGAAGCTCTCTGGAGAAAAAGTGACGGTCACATTCAACATCAAcaacagtgtttcccctaacTTTGAAGAGGAGGCTGAACAAGTGCAAGGACAGAAGCCGGCAGAAAGTGAGCCTGATATTGTGTCCACACCGAACTTTGTTGTCGAGGTGACGAAACCAGCAGCAAAACATTCCTTGGTGTTTGACTGCCATTATCCTGAAGATGAGGTAAGCCATGgtgaaggggaagaggagagcgACATCTTTTCCATACGGGAGGTCAGTTTCCAGCCCGAGGGAGATGGAGAGTGGAAGGAGACGTCCTACACACTCAACACAGAGTCTCTGGATTGGgctctgTATGACCACCTGATGGACTTCCTGGCTGACCGGGGGGTTGACAACACGTTTGCTGATGAACTGATCGAGCTGAGCACTGCCATGGAGCATCAGGAATACGTCAAGTTCCTGGAAGACCTTAGTGGCTTTATCAAATGCAATTAATGTGTATGTAGATGGAACAAAATTAACTGAAATTTAAACATGTGGCTTAGACACCATCCCCCTCTAAATATTTTCCATTGGTTTCCCAATCTAATTTTGTGGAGTGGGGGAGGGTATAGGTACAAGAATTGTTGCATTTGATGTTTCTGCAGCTTTTAATTTCATATTGAATCACTTTGCTGCACCTTACTGTAACTGATGTTAATATAAAAGGCCGCTAGTATCGA

Function

NR:

description
complement component 1 Q subcomponent-binding protein, mitochondrial

GO:

id name namespace
GO:0005759 mitochondrial matrix cellular_component

KEGG:

id description
K15414 C1QBP; complement component 1 Q subcomponent-binding protein, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989601.1 True 1280 mRNA 0.46 6 7684889 7693572

Neighbor

gene id symbol gene type direction distance location
LOC110533309 NA coding downstream 2061 7674779 ~ 7682828 (-)
LOC110533304 LOC106603946 coding downstream 14111 7481614 ~ 7670778 (-)
LOC100136697 LOC100136697 coding downstream 214950 7457304 ~ 7469939 (-)
LOC110533297 LOC106603951 coding downstream 376639 7080591 ~ 7308250 (-)
hsf5 LOC106603959 coding downstream 642967 7036198 ~ 7041922 (-)
dhx33 dhx33 coding upstream 277 7660924 ~ 7725035 (-)
LOC118966703 LOC106603934 coding upstream 100030 7793602 ~ 7893155 (-)
LOC110534844 atp2a3 coding upstream 287776 7981348 ~ 8092260 (-)
ankfy1 LOC106603930 coding upstream 508063 8201635 ~ 8239974 (-)
LOC110533316 LOC106603929 coding upstream 546900 8240472 ~ 8254020 (-)
G850233 NA non-coding downstream 43499 7559076 ~ 7641390 (-)
G850266 NA non-coding downstream 45139 7636722 ~ 7639750 (-)
G850243 NA non-coding downstream 95469 7586816 ~ 7589420 (-)
G850214 NA non-coding downstream 132168 7551930 ~ 7552721 (-)
G850229 NA non-coding downstream 133953 7550341 ~ 7550936 (-)
G850281 NA non-coding upstream 6058 7699630 ~ 7700425 (-)
G850305 NA non-coding upstream 89860 7783432 ~ 7784602 (-)
G850304 NA non-coding upstream 92613 7786185 ~ 7787342 (-)
G850348 NA non-coding upstream 106647 7800219 ~ 7802044 (-)
G850360 NA non-coding upstream 138010 7831582 ~ 7832153 (-)
G849864 LOC106603950 other downstream 241272 7400883 ~ 7443617 (-)
G849536 NA other downstream 669667 7014731 ~ 7015222 (-)
G849438 hpd other downstream 897369 6778916 ~ 6787520 (-)
G848524 LOC106591845 other downstream 1862861 5739884 ~ 5822028 (-)
G850323 NA other upstream 47730 7741302 ~ 7746624 (-)
G850763 NA other upstream 737959 8431531 ~ 8432041 (-)
G852802 NA other upstream 2768684 10462256 ~ 10462650 (-)
G853244 NA other upstream 3311537 11005109 ~ 11005658 (-)
G853740 NA other upstream 3748680 11442252 ~ 11442590 (-)

Expression


Co-expression Network