LOC110533398 (LOC106603910)


Basic Information

Item Value
gene id LOC110533398
gene name LOC106603910
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9406884 ~ 9421324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989644.1
GAAAAGATGATTACAGAGGAAATGTCATCCTGACTAGAGGTAGGACTGTAGCCACAAGTTTTGTACAGGGAGAAAATTCAATGGAATCCTCAGCAGACAAGGAGTCTGAGGCAGTCCTTGACAGACTTGACTCTCAGACCAATGTTAGAGTATCTGAACAGCATGAATGTCCAGACGGCCAAAGCACTGCAGCCCACAGGGGTACTGAGCAGGGGGACGATGCTTTCTTTGACTGTGAGGAGTCTCTGAATGGAGCAGACGGCTCCATGGGTGACAGACAGAGAAGGACTGACTGTTCAGAAGCCCCAGCATTATTCCAGGAAACAGAGGGGTGTTCACCAAACACAGAGAAAAAACACGTCAATGCAGAGTTAGGAGAAGAAGCCGAGTTGTCAGGGGAGAGAACTACATTATTGGGaggtgaagaagaggagggaaaAGAAACGTGGGATGAGTGCACTGAAGAAGACAAGAGTATGGCAGTTGAAGGGGGAGATTCTGATACTGAACTGAATGAAGAAGAGAACGCCCCTCCTGAATTTGATGAGGAGTATCTGAGACAAGTGGAGAAAGACATGACCGAGGAGGAAACAGAGAGCCGCCGAGAGGAGAGCATGAGCCTGAAGGACAAGGGGAACAGTCAGTTCAAGAGTGGAGAGCACACTGAGGCAGAGGAGTCGTACACTGCAGCTTTAGGATTATGCCCTGTGTGTTCCAGCAAGGAGAGAGCTATCCTCTTCTCTAACCGTGCTGCTGCCCGCCTGCACCTGGATAAGAATGAGAGAGCCATCGCTGACTGCACCAAGGCCATAGAGTTGAACCCAAACTACATGCGAGCGATCCTGCGGAGGGCAGAGCTCTATGAGAAAACAGACAAGCTGGATGAGGCTTTGGAAGACTACAAGGCTGCTCTGGAGAAAGACCCCGACCTGCCTTCAGCCAGAGAGGCCTGCATGCGGCTTCCACAACAGATCCACGAGCGAAATGAGAAGCTGAAGGACGATATGATGGGCAAACTGAAGGACTTGGGCAATATGTTCCTGCGGCCATTTGGTCTGTCCACATCAAACTTCCAGGTAAACCAGGATTCGGGCACTGGATCCTACTCTGTCAACTTTGTTCAGAATCCTAACAACAACAGATCACAGCATGAGGAGCCTGTCTGAGAGCCGTCGTCACACCTGGCTTGGCCACCCATCCTCAGAGCTAAGAGAACAGACAGTCAGGATCTTCCACTGGTGTGTCAGAGTGGGATCCATTTTGAAATTTAAAAGACTTATTTAATTTAAtaagattgtgtgtgtgagatggtgGACAATCTGAAAGGGTCATTAAATGATCAGTGACTG
>XM_036989643.1
ACTACATTTCCCAGAGTGCCTCAGCGTTGTATTGATTTGATAAGCAGCCGGAAAAGATGATTACAGAGGAAATGTCATCCTGACTAGAGTTTTGTACAGGGAGAAAATTCAATGGAATCCTCAGCAGACAAGGAGTCTGAGGCAGTCCTTGACAGACTTGACTCTCAGACCAATGTTAGAGTATCTGAACAGCATGAATGTCCAGACGGCCAAAGCACTGCAGCCCACAGGGGTACTGAGCAGGGGGACGATGCTTTCTTTGACTGTGAGGAGTCTCTGAATGGAGCAGACGGCTCCATGGGTGACAGACAGAGAAGGACTGACTGTTCAGAAGCCCCAGCATTATTCCAGGAAACAGAGGGGTGTTCACCAAACACAGAGAAAAAACACGTCAATGCAGAGTTAGGAGAAGAAGCCGAGTTGTCAGGGGAGAGAACTACATTATTGGGaggtgaagaagaggagggaaaAGAAACGTGGGATGAGTGCACTGAAGAAGACAAGAGTATGGCAGTTGAAGGGGGAGATTCTGATACTGAACTGAATGAAGAAGAGAACGCCCCTCCTGAATTTGATGAGGAGTATCTGAGACAAGTGGAGAAAGACATGACCGAGGAGGAAACAGAGAGCCGCCGAGAGGAGAGCATGAGCCTGAAGGACAAGGGGAACAGTCAGTTCAAGAGTGGAGAGCACACTGAGGCAGAGGAGTCGTACACTGCAGCTTTAGGATTATGCCCTGTGTGTTCCAGCAAGGAGAGAGCTATCCTCTTCTCTAACCGTGCTGCTGCCCGCCTGCACCTGGATAAGAATGAGAGAGCCATCGCTGACTGCACCAAGGCCATAGAGTTGAACCCAAACTACATGCGAGCGATCCTGCGGAGGGCAGAGCTCTATGAGAAAACAGACAAGCTGGATGAGGCTTTGGAAGACTACAAGGCTGCTCTGGAGAAAGACCCCGACCTGCCTTCAGCCAGAGAGGCCTGCATGCGGCTTCCACAACAGATCCACGAGCGAAATGAGAAGCTGAAGGACGATATGATGGGCAAACTGAAGGACTTGGGCAATATGTTCCTGCGGCCATTTGGTCTGTCCACATCAAACTTCCAGGTAAACCAGGATTCGGGCACTGGATCCTACTCTGTCAACTTTGTTCAGAATCCTAACAACAACAGATCACAGCATGAGGAGCCTGTCTGAGAGCCGTCGTCACACCTGGCTTGGCCACCCATCCTCAGAGCTAAGAGAACAGACAGTCAGGATCTTCCACTGGTGTGTCAGAGTGGGATCCATTTTGAAATTTAAAAGACTTATTTAATTTAAtaagattgtgtgtgtgagatggtgGACAATCTGAAAGGGTCATTAAATGATCAGTGACTG
>XM_036989645.1
ACTACATTTCCCAGAGTGCCTCAGCGTTGTATTGATTTGATAAGCAGCCGGAAAAGATGATTACAGAGGAAATGTCATCCTGACTAGAGTTTTGTACAGGGAGAAAATTCAATGGAATCCTCAGCAGACAAGGAGTCTGAGGCAGTCCTTGACAGACTTGACTCTCAGACCAATGTTAGAGTATCTGAACAGCATGAATGTCCAGACGGCCAAAGCACTGCAGCCCACAGGGGTACTGAGCAGGGGGACGATGCTTTCTTTGACTGTGAGGAGTCTCTGAATGGAGCAGACGGCTCCATGGGTGACAGACAGAGAAGGACTGACTGTTCAGAAGCCCCAGCATTATTCCAGGAAACAGAGGGGTGTTCACCAAACACAGAGAAAAAACACGTCAATGCAGAGTTAGGAGAAGAAGCCGAGTTGTCAGGGGAGAGAACTACATTATTGGGaggtgaagaagaggagggaaaAGAAACGTGGGATGAGTGCACTGAAGAAGACAAGAGTATGGCAGTTGAAGGGGGAGATTCTGATACTGAACTGAATGAAGAAGAGAACGCCCCTCCTGAATTTGATGAGGAGTATCTGAGACAAGTGGAGAAAGACATGACCGAGGAGGAAACAGAGAGCCGCCGAGAGGAGAGCATGAGCCTGAAGGACAAGGGGAACAGTCAGTTCAAGAGTGGAGAGCACACTGAGGCAGAGGAGTCGTACACTGCAGCTTTAGGATTATGCCCTGTGTGTTCCAGCAAGGAGAGAGCTATCCTCTTCTCTAACCGTGCTGCTGCCCGCCTGCACCTGCGGCTTCCACAACAGATCCACGAGCGAAATGAGAAGCTGAAGGACGATATGATGGGCAAACTGAAGGACTTGGGCAATATGTTCCTGCGGCCATTTGGTCTGTCCACATCAAACTTCCAGGTAAACCAGGATTCGGGCACTGGATCCTACTCTGTCAACTTTGTTCAGAATCCTAACAACAACAGATCACAGCATGAGGAGCCTGTCTGAGAGCCGTCGTCACACCTGGCTTGGCCACCCATCCTCAGAGCTAAGAGAACAGACAGTCAGGATCTTCCACTGGTGTGTCAGAGTGGGATCCATTTTGAAATTTAAAAGACTTATTTAATTTAAtaagattgtgtgtgtgagatggtgGACAATCTGAAAGGGTCATTAAATGATCAGTGACTG

Function

NR:

description
Tetratricopeptide repeat protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989644.1 False 1349 mRNA 0.49 8 9406884 9421274
XM_036989643.1 False 1380 mRNA 0.49 8 9406884 9421324
XM_036989645.1 True 1194 mRNA 0.48 6 9406884 9421324

Neighbor

gene id symbol gene type direction distance location
LOC110533407 LOC106603912 coding downstream 23579 9381069 ~ 9383305 (-)
zgc:110540 LOC106603918 coding downstream 124629 9275315 ~ 9282255 (-)
LOC110533409 LOC106603919 coding downstream 135504 9223568 ~ 9271380 (-)
eif4ebp3 4ebp coding downstream 184531 9217462 ~ 9222353 (-)
mat2b mat2b coding downstream 196224 9205655 ~ 9210660 (-)
LOC110533391 LOC106603909 coding upstream 8459 9429783 ~ 9445753 (-)
LOC110533389 LOC106603906 coding upstream 136217 9557541 ~ 9560849 (-)
LOC110533386 LOC106603904 coding upstream 199614 9620938 ~ 9659052 (-)
LOC110533392 LOC106603903 coding upstream 238905 9660229 ~ 9676190 (-)
fam53c LOC106603902 coding upstream 255420 9676744 ~ 9689487 (-)
G852028 NA non-coding downstream 4185 9400765 ~ 9402699 (-)
G851990 NA non-coding downstream 55889 9346222 ~ 9350995 (-)
G851947 NA non-coding downstream 66421 9264524 ~ 9340463 (-)
G851938 NA non-coding downstream 164636 9241852 ~ 9242248 (-)
G851923 NA non-coding downstream 192275 9214278 ~ 9214609 (-)
G852050 NA non-coding upstream 33703 9455027 ~ 9457980 (-)
G852066 NA non-coding upstream 70255 9491579 ~ 9497754 (-)
G852070 NA non-coding upstream 76922 9498246 ~ 9498834 (-)
G852081 NA non-coding upstream 100713 9522037 ~ 9522580 (-)
G852000 NA non-coding upstream 227736 9649060 ~ 9650490 (-)
G850763 NA other downstream 974843 8431531 ~ 8432041 (-)
G850323 NA other downstream 1660260 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 1963267 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 2274319 7080591 ~ 7308250 (-)
G849536 NA other downstream 2391662 7014731 ~ 7015222 (-)
G852802 NA other upstream 1040932 10462256 ~ 10462650 (-)
G853244 NA other upstream 1583785 11005109 ~ 11005658 (-)
G853740 NA other upstream 2020928 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 2160362 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 2193932 11615256 ~ 11620922 (-)

Expression


Co-expression Network