LOC110533391 (LOC106603909)


Basic Information

Item Value
gene id LOC110533391
gene name LOC106603909
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9429783 ~ 9445753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617538.2
CGGAGTGAGAGGCGACAGTCACGACGACTGCAGCAGCTGGTTAAAGTGATATAATCTTGTGTTATGAAATTTAAATTTTCCGGGAAACATCAGGGGATTATGGAACCACACCATAGAAGGTCAAACGCGCTTTTTCGATCAGTTTTGCGCTCATTCTTAGTAATTGTTTTAATTTCCAAAACCACTTGAAATGAAGAATACTGGTGATTTAACAAAATTAACAATGTGTCTGTGTTGATCCATGGATTTACACTTATCTGGTATGGAGGAACTGGGTCATCAACATGAGTTTTGATACTGCTAATGATGCCAACTTCTGGAGTAACGGGTCCTCTGAGCTGTACGCAGAGACACCAGGACCGTTGTCTGCAAATAAGTCAAATTTGACCACAGCGAATTACACAGACACGAATCCTCTGGACCTTACCCGAGCCGTGTCCGTTGGTATGGTTCTGGGCGCTTTCATTTTGTTCGCAATCGTGGGCAACATACTCGTAATACTTTCCGTTGTGTGCAACAGACACCTGCGTATCCCAACGAACTATTTCATTATCAACCTAGCAATTGCAGACCTGTTACTGGGTACCACAGTTCTGCCCGTGTCCGCAACACTGGAGATTCTCGACTACTGGGTATTCGGGAGGATCTTCTGTGACATCTGGGCAGCAGTGGACGTGTTATGTTGCACGGCCTCCATCATGAGCCTGTGCGTAATATCCATAGACCGTTATATAGGCGTGCGCTACCCACTGCAGTACCCCTGTATAGTAACGGAGAAAAGAGCCATTTTGGCCATGCTCGGTGTGTGGGTTCTCGCCACTGTCATCTCCATCGGACCTCTACTAGGGTGGAAACAACCACCCTCAAATGATGACACCGTTTGCCCCATCACCGAAGAGCCCTTTTACGCACTCTTCTCCTCCCTGGGTTCATTTTACATACCTCTGGCTGTCATCCTGTGCATGTACTGCCAGGTTTATGTAGTTGCCAAACGGACGACTAAGAACTTGGAGGCGGGGGTCATGAAAGAACGCATGGACTCGAATGAGCTCACGCTCAGGATCCACTGCAAAAACGCACAGCTGCAAGAATACTGCGTCACGGGCAAAGGCCAGGCGCGGAGCACACTAACGGTGAAACTGCTCAAGTTCTCCCGAGAGAAGAAAGCTGCTAAAACTCTGGGTGTGGTGGTAGGCATGTTTATTCTCTGCTGGCTGCCATTCTTCCTCGTGCTGCCCATCGGGTCGTTCAACGCCAACCTGCGTCCCTCGGAGACGTTCTTCAAGGTGATCTTCTGGCTGGGCTACTTCAACAGCTGCCTGAACCCCATCATCTACCCCTGCTACAGCCGAGAGTTCAAGCAGGCCTTCATCCGTATCCTCAAGTGCCGCTGCCatcagaagaagaagcagaagggTTCGAGGGCCTACTACAACCAACGTTCCTCTCGCCTGGGCTCCACCAATACCTCCTACCTGAACGGAAGTCAGCAGACCCTGTCCTCCGTCAACCCCAGCCCTCACTGTGTCAGCAAAGGGACTGGCTCTCGCCTAGAGCCTGGGTTTGACCTCAACTCCCCATCCCCCTGCACGTCTCTGCCTGGGAGCCCTTTCACTGGCCAGATGAGAGCCCTCCCTGGGGCTGTCTACCAGAGCACCAGCAGAAATAACAGAGTCCACCTGGTCTCTCCCCTGGCCAGGGAGTCAGTTCATGCCAATGGACAGAGTAGGAATGGAGAGGTGGAGCATGGCTCAATCAGGGCAACACCTGACACAATTATGTAATGACTGTGTGGGGCACCAGTCATAAGCCTGGACAATATCGTTTGATAGTCTGTACTAATGCTGGCATGAGACTTTTTTTTTAGAGACACTATACATTGGATCATTGTAAATGTCTAAATGCAATATGGACAGCAGCCTAACTACTGTAGCAGTATGGATTGAAGATGTCCACATCACAATGTTTCCCTGAGTATTTCTTACTAAGAATCTGGTTGCTTCTAGTTCCATGTCCTCCAAATGTCATCGTCAATAGGACTTTTGGACAATTTTAGACAGAACATTGAAGTCTTCTGCTACTGCACAAAACACAATGTGTGCAGCTCTGGCACATACTAACTAGGCCCTTGAAAGACTCCATGAAAAAGGGACCAACTGTACTGACGTTTTGACCTGGGTTGCACTGCTCTGCATTTTCAACagatatacatacagttgaagccgtagccaaatacatttcagctcagtttttcacaattcctgacatttaatgctagtaaaaattccctgtcttaagtcagttaggataatcactttattttaagaatatgaaatgtcagaataatagtggagagaatgatttatttcagcttttatttctttcatgacattcccattgggtcagaagcttacatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtaaaacgtttcgggtagccttccgcaagtaagttgggtgaattttggcccattcatcctgactGAGCTGGTGGAACTGAATCAggtctgtaggcctccttgctcgcacacgctttttcggtTCTGgacacaacatttctataggattgaggtcagggctttgtgatggccactccaatgccttgactttgctgttcttaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K04136 ADRA1B; adrenergic receptor alpha-1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617538.2 True 2665 mRNA 0.47 2 9429783 9445753

Neighbor

gene id symbol gene type direction distance location
LOC110533398 LOC106603910 coding downstream 8459 9406884 ~ 9421324 (-)
LOC110533407 LOC106603912 coding downstream 46478 9381069 ~ 9383305 (-)
zgc:110540 LOC106603918 coding downstream 147528 9275315 ~ 9282255 (-)
LOC110533409 LOC106603919 coding downstream 158403 9223568 ~ 9271380 (-)
eif4ebp3 4ebp coding downstream 207430 9217462 ~ 9222353 (-)
LOC110533389 LOC106603906 coding upstream 111788 9557541 ~ 9560849 (-)
LOC110533386 LOC106603904 coding upstream 175185 9620938 ~ 9659052 (-)
LOC110533392 LOC106603903 coding upstream 214476 9660229 ~ 9676190 (-)
fam53c LOC106603902 coding upstream 230991 9676744 ~ 9689487 (-)
slbp2 LOC106603940 coding upstream 245456 9691209 ~ 9694551 (-)
G852020 NA non-coding downstream 15639 9413526 ~ 9414144 (-)
G852028 NA non-coding downstream 27084 9400765 ~ 9402699 (-)
G851990 NA non-coding downstream 78788 9346222 ~ 9350995 (-)
G851947 NA non-coding downstream 89320 9264524 ~ 9340463 (-)
G851938 NA non-coding downstream 187535 9241852 ~ 9242248 (-)
G852050 NA non-coding upstream 9274 9455027 ~ 9457980 (-)
G852066 NA non-coding upstream 45826 9491579 ~ 9497754 (-)
G852070 NA non-coding upstream 52493 9498246 ~ 9498834 (-)
G852081 NA non-coding upstream 76284 9522037 ~ 9522580 (-)
G852000 NA non-coding upstream 203307 9649060 ~ 9650490 (-)
G850763 NA other downstream 997742 8431531 ~ 8432041 (-)
G850323 NA other downstream 1683159 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 1986166 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 2297218 7080591 ~ 7308250 (-)
G849536 NA other downstream 2414561 7014731 ~ 7015222 (-)
G852802 NA other upstream 1016503 10462256 ~ 10462650 (-)
G853244 NA other upstream 1559356 11005109 ~ 11005658 (-)
G853740 NA other upstream 1996499 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 2135933 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 2169503 11615256 ~ 11620922 (-)

Expression


Co-expression Network