LOC110533389 (LOC106603906)


Basic Information

Item Value
gene id LOC110533389
gene name LOC106603906
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9557541 ~ 9560849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617535.2
GTTTAACAGAGCCCATGTCAGTACAGAGCAGGAAGCACCGTAGTACGTTAGCGAAATTATTCGTACCAAACACGTGAACTAAAAGCGAAAAAGTTCATCAAAAGGGAAAACACAACAACTACACATTTCTTTATTACAAATCGGGATAactagaagaagaaaaaaatgttttaattccTACCGTTATGGGAATGAATGAACCACAAGATCGTTATTGAAGACTGGGAACTTTTGCGAAATTGAATGCAGCAAAGTCTTGCAGATCTTACAGCATTGGATTCCTCAGACCATCCTCCTCAAcaagagcagcagcagcatattCAGCTGGCTGGTAATCTCCTCTCACCTGAGACAAAAAGCTGCAGCGTCAGCTGCGTCTCCacctcctctgtttctccatacAGTCAGAGCACCGGCAGCACAGCACCATGGCTGCAGCCAAGACAGAGATGCTCCCCTCAGCCCTGCAGATCTCAGACCCACTGGGCTTCTCCTACTCTCCCATGGACAGCTACCCCAAGCTGGAGGAGATGATGTTGCTCCACTCAACAGGGACCCCCTTCCTGACTGCCTCTGCACCAGACGGTGTAGGCTTTGGTACCGGGGAGCCAGGAGACTCATACAACCATCTGACTGGAGATACATTGCATGATATCTCTATCGGCTGTGAGAAGTCTCTCATGGAGCAGACCTACTCAACCCCTCGCCTGCCTTCCGTCTCCTACACAGGGAGGTTCACCCTGGAGCCTGCAACCAGTTGCAGCAACAGCCTGTGGCCAGAGCCATTATACAGCCTGGTCAGTGGGCTAATGGGCATGTCCCAACCACCCACCTCAGCTGCCCCATGCTCATCTGCTGCTCCGGTCAGCTCCTCCTCCCACACCGTGAGCTGGCCCGTCCAAATCGGCGACACCAGCACCACCTACTGCAGCGTCAGCCCTGACCTCTTCCCTGACTCCAACCAGTCCTTTCCCAGCCCCTCAAACAGCTCAGTCCAGTACCCACCACCCGCCTACCCCAGCAGCAAGACATGCTCCCCCAACATGTCTCTGCCCATGATACCAGACTATCTATTTCCTCAGCAGCAGGGTGAGATCAGCTTGCTGCCCCCTGACCAGAAGCCTTTCCAGTGTCAGAGCATCCAGCAGCAGCTCTCCCTCACGCCCCTCTCCACCATCAAGGCTTTCGCCACACAGACTGGTTCTCAGGACCTGAAGGGCTCCTACCAGTCTCAGCTGGTGAAGCCTGGCTCTCAGGACCTGAAGGGCTCCTCCTACCAGTCTCAGCTGGTGAAGCCCAGCCGCATGCGCAAGTACCCCAACCGCCAGTGCAAGACTCCGCCTCACGAGCGGCCCTACGCCTGCCCCGTGGAAACGTGCGTCCGCCGATTCTCCCGTTCAGACGAGCTGACACGCCACATCCGCATCCACACGGGCCAGAAGCCCTTCCAGTGCCGCATCTGCATGCGCAACTTCAGCCGCAGTGACCACCTGACCACGCACATCCGCACGCACACGGGCGAGAAGCCCTTCCCCTGCGACATCTGCGGCCGCAAGTTTGCCCGCAGCGATGAACGAAAACGGCACACCAAGATCCACTTGAGGCAGAAGGACAAGAAGGTGGAGAAGGCAGGGTCCGCCCCCATGGCCATCCCTTCCCCAGTCTCAGGGTACTCCTCCCCCTCCACATCATACCCCTCTCCCAGCTCCTCATACCCCTCCCCAGTGCCGTCCTCATACCCCTCCCCAGTGCCGTCCTCATACCCCTCCCCAGTGCCGTCCTCATACCCCTCCCCAGTGCCCTCCTGCTACTCCTCCCCGGTGCACAGCTCCTATGGCTCCCCATCAGTCAACACCATGTACTCCTCAGCCTCCAGTACATTTCAAACGCACGTATCCACCTCGTACGGTTCCCCCACAAACATTTACAGCTCCCCTGTGGGCACTCCTCAGTCAGACCTGCAGTCCACCCTCTCTCCAAAGAACATTGACATCTACTAAGACTTTCATATCTTTACTTATCATTTATTTCTGTTTGAAAAGAACAAGCAAACATTGTTACCTTTTCGAAGGCACTTTTTCTCCCCCTGTGTTCATACAGCACTTAATGATCATGAAACGTATCCTATAGCGACAGAGGATGGAAAGGGAACGGTTTCTCTCTTCAACTCAACCCCAGTACTTCAACGAGCCTTCTGATATGTAGAGAGCAAAGGATATTAGGATTTTGGTGGGACTTTTTGATACTGACAGCCTGAAATTCAAAAATACGCAGACCGCACCGTGTATCAGTGTATCTGTGTCTTTTTTGACTTTGTAGATGATTGTTCTTTACATGGTATCATGGGAACTTGTTGGCACCATGTTTCTCTGAATACGTTTTCTCGTATGTAGTAACAATGGTGAAACCACATTTTATCGGAGAAGTACTCGAGCATGTTTACTGTAAGACACATTTGTTTCTATTGCTTTGTATATTACCCATTGGTACTCTCTTCCCTGTTCCTTTTTTCAACATGGATTCATGAAAAAAATAATTTTTCATTATTAACATTTTTTTGTGCCTTTTGGTGAAGCTCAGCAAACTAAACTCTGTTTTGTGATTTGGATGCGTTGCATCTGAAGTAGCCTTAGAATGGGAAGTGTATTCGTCACGGATTGTAAGGGATGATTTGGAGGGAACCGAGGTCATCGCTTACACAAGAATAtaagtgaaaaaaatatatatatttttataattgAAAGCGTAAATATGTACATATTCAGCAGTCAAAACGTTGTTACCTACTGAGTAGGCATGGGATTTTTGCATGTTATTTACATGCAGTTCATTATTTTGTGGTCAGTTGTAATTGTAAAACCAAGTGACTGTTTTTGGTTTCTAAAGACATTGAATGCGCTTTGCTGCCAAGGATATTGGTGTACATGATATCCTTTAAGAAAAGGGATATTAATAAAATATCAATATATTATGATAAAA

Function

NR:

description
early growth response protein 1-like

GO: NA

KEGG:

id description
K09203 EGR1; early growth response protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617535.2 True 2979 mRNA 0.49 2 9557541 9560849

Neighbor

gene id symbol gene type direction distance location
LOC110533391 LOC106603909 coding downstream 111788 9429783 ~ 9445753 (-)
LOC110533398 LOC106603910 coding downstream 136217 9406884 ~ 9421324 (-)
LOC110533407 LOC106603912 coding downstream 174236 9381069 ~ 9383305 (-)
zgc:110540 LOC106603918 coding downstream 275286 9275315 ~ 9282255 (-)
LOC110533409 LOC106603919 coding downstream 286161 9223568 ~ 9271380 (-)
LOC110533386 LOC106603904 coding upstream 60089 9620938 ~ 9659052 (-)
LOC110533392 LOC106603903 coding upstream 99380 9660229 ~ 9676190 (-)
fam53c LOC106603902 coding upstream 115895 9676744 ~ 9689487 (-)
slbp2 LOC106603940 coding upstream 130360 9691209 ~ 9694551 (-)
LOC110533396 LOC106603900 coding upstream 139098 9699947 ~ 9704496 (-)
G852081 NA non-coding downstream 34961 9522037 ~ 9522580 (-)
G852070 NA non-coding downstream 58707 9498246 ~ 9498834 (-)
G852066 NA non-coding downstream 59787 9491579 ~ 9497754 (-)
G852050 NA non-coding downstream 99561 9455027 ~ 9457980 (-)
G852020 NA non-coding downstream 143397 9413526 ~ 9414144 (-)
G852000 NA non-coding upstream 88211 9649060 ~ 9650490 (-)
G852157 NA non-coding upstream 142513 9703362 ~ 9773443 (-)
G852156 LOC106603899 non-coding upstream 145953 9706802 ~ 9722544 (-)
G852177 NA non-coding upstream 178950 9739799 ~ 9740888 (-)
G850763 NA other downstream 1125500 8431531 ~ 8432041 (-)
G850323 NA other downstream 1810917 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 2113924 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 2424976 7080591 ~ 7308250 (-)
G849536 NA other downstream 2542319 7014731 ~ 7015222 (-)
G852802 NA other upstream 901407 10462256 ~ 10462650 (-)
G853244 NA other upstream 1444260 11005109 ~ 11005658 (-)
G853740 NA other upstream 1881403 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 2020837 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 2054407 11615256 ~ 11620922 (-)

Expression

LOC110533389(LOC106603906) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110533389(LOC106603906) Expression in each Bioproject

Bar chart with 21 bars.
LOC110533389(LOC106603906) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network