LOC110533392 (LOC106603903)


Basic Information

Item Value
gene id LOC110533392
gene name LOC106603903
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9660229 ~ 9676190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617541.2
ATTGGAGCAAGGGGTAGGTTGAAGGAGGAGAGAGTTTGCCTGGGATTGTGCCAAGCGAAAGCATTCTGACAGTAACTGTaagtggagaaggagaagaagaaaggcTGGTCAACTGCAGCATGCAAGGCATTCGCCCCCCGATTTTGAATGGGCCGATGCACCCGCGCCCCCTAGTGGCACTGTTGGATGGTCGCGACTGCACCGTGGAGATGCCTGTCCTGAAGGACGTGGCCACGGTGGCCTTCTGTGATGCCCAGTCCACCCAGGAGATCCACGAGAAGGTGCTGAATGAAGCAGTGGGCGCCCTGATGTACCACACCATCACTCTCTCGCGGGACGACCTCGACAAGTTCAAGGGCCTGCGGATCATCGTGCGAATAGGCAGTGGCTTTGACAATGTGGACATCAAGGCCGCGGCTGAACTAGGTATAGCTGTGTGTAATGTGCCTGCCACGTCAGTGGAGGAGACAGCGGACACCTCCATGTGTCTGATCCTGAACCTTTACCGCCGCGTCACCTGGATGCACCAGGCTATGAGAGAGGGCACCAGGGCTTCCAGCGTGGAGCAGATCAGGGAGGTGGCCAGCGGCGCTGCCCGCATCCGGGGAGAGACGCTGGGTATCATAGGCCTGGGGCGAGTGGGCCAGGCTGTAGCGCTGCGAGCCAAGGCCTTTGGCTTCAGTGTGATATTCTACGACCCCTACCTGCCAGACGGAGTGGAACGCTCTCTGGGCCTGCAGAGAATGGCCACCCTGCAGGACCTTCTCATTCACTCTGATTGTGTGTCACTGCACTGCAGCCTCAACGAGCACAACCATCACCTCATCAACGACTTCACCATTAAACAGATGCGCCAGGGGGCATTTTTGGTGAACACGGCGCGAGGGGGCCTGGTGGATGAGAAGGCCCTGGCCCAGGCACTGAAAGAGGGAAGGATACGGGGTGCGGCCTTGGACGTACATGAGACGGAGCCCTTCAGCTTCTCTCAGGGCCCACTGAAGGACGCTCCCAATCTGATTTGCACCCCCCACACATCCTGGTACAGTGAGCAGGCGTCCCTTGAGGCTCGGGAGGAGGCAGCTAGAGAAGTGCGCCGGGCCATCACAGGCCGCATCCCTGACAGTCTGAAGAACTGTGTGAACAAGGAGTATCTGATGGCAACACCCCAGTGGCCTGGTGTGGACCATGGGGCCGTGCACTCAGAACAGAACGGAGCTGCAGCTTACAGGTTCCCTACTGGCCTAGTGGGAGTGACAGCAGGAGGCCTGACAGGGGCAGGTGCTGCAGTGGAGGGAATTGTTGCAGGAAACCTGGCTATGGCACATGGGATTGCCCCCATGTCCCGACCCCCCCACACCCCATCGCCGGGGCAACCCTCTAaagcagaaacagacagagacatgccAACGGACCAGTAGCCCCCCAACTATCCCCAATCCCCCTCTTGTCCACAACATTCCGTCGTCACCCTTCATGTTCATTCAAGCTTATAGACAGACACTGGTATTGAGGTCCATTCTGACCTGGCTTTGGTCCCGTCCTACAGAACAGAATCCTTCAGGAGGGACAGAATCCTCGACTCCCTCCACACATCCTGTTTTCTCTCATCCAGAATGCAATAAGTGGATTACTCAAGGATTTTATTTTTCTTCCAGTTTGCTTTTTAAACCCCTCTGTGTCTGACGTTCATGTGGCTCAGTGGTTTTGTAAATTAGTCCTTTGTGGGAGACCTGTTCCAATTTTTTTCCTGTGTTATTTGCTTTTGTTATCTCTTTTGCTGTTTGACATGCTATAAAGTGAGGCATAAGTCTGGAACGGTATTGaagatgacccccccccccccccccccccccccccctcccactacTATTTGTTCACAAACCTTACAAAGGATTTTCTAATGTCGGACTCTACATTTTAGTCATCACAATAAAAGTGTGgctgtgatttatttttattttctagcTTTATGACATAAATTCAATAATATCACATTATATGCCTCTGCTgataaaacacagaaatatgcACAGTATATTTCTGTGTCAAAGACCACCACattcagtcgtggccaaaagttttgagaatgacacattcattttcaaagtttgctgcttcagtgtcttcagatatttttgtcagat
>XM_021617539.2
tctggtctgcaaTACCTCCTGTGTTACGTGAAGGCGCCACACTCCACTAACAGTGGTTTATCAAGACTTCTCATTATTTTGTGACACCGACTCGTCCGTCACCTGACTCATCTGAACAAACTGTTTGGATTCATGACGATCCGTTAAGTGGGAAGACGTAAACTCATATTGACCCCCACAAGACCGAGATTAACAGAACCTGCAGTACTTGGTTTTCACCGGGGCATATACTTGTTCCTTGGGAGGTGTTTGACTCTGACATTTGCCTTGTGTGGCTCAGCTTTGGTCTGATTTTGTTTGTGCTTTGGCTGGGGTGAAGAACGCCGATGGCTCTCATGGATAAGCATAAAGTCAAGCGACAGAGGCTTGACCGCATTTGTGAAGGCATTCGCCCCCCGATTTTGAATGGGCCGATGCACCCGCGCCCCCTAGTGGCACTGTTGGATGGTCGCGACTGCACCGTGGAGATGCCTGTCCTGAAGGACGTGGCCACGGTGGCCTTCTGTGATGCCCAGTCCACCCAGGAGATCCACGAGAAGGTGCTGAATGAAGCAGTGGGCGCCCTGATGTACCACACCATCACTCTCTCGCGGGACGACCTCGACAAGTTCAAGGGCCTGCGGATCATCGTGCGAATAGGCAGTGGCTTTGACAATGTGGACATCAAGGCCGCGGCTGAACTAGGTATAGCTGTGTGTAATGTGCCTGCCACGTCAGTGGAGGAGACAGCGGACACCTCCATGTGTCTGATCCTGAACCTTTACCGCCGCGTCACCTGGATGCACCAGGCTATGAGAGAGGGCACCAGGGCTTCCAGCGTGGAGCAGATCAGGGAGGTGGCCAGCGGCGCTGCCCGCATCCGGGGAGAGACGCTGGGTATCATAGGCCTGGGGCGAGTGGGCCAGGCTGTAGCGCTGCGAGCCAAGGCCTTTGGCTTCAGTGTGATATTCTACGACCCCTACCTGCCAGACGGAGTGGAACGCTCTCTGGGCCTGCAGAGAATGGCCACCCTGCAGGACCTTCTCATTCACTCTGATTGTGTGTCACTGCACTGCAGCCTCAACGAGCACAACCATCACCTCATCAACGACTTCACCATTAAACAGATGCGCCAGGGGGCATTTTTGGTGAACACGGCGCGAGGGGGCCTGGTGGATGAGAAGGCCCTGGCCCAGGCACTGAAAGAGGGAAGGATACGGGGTGCGGCCTTGGACGTACATGAGACGGAGCCCTTCAGCTTCTCTCAGGGCCCACTGAAGGACGCTCCCAATCTGATTTGCACCCCCCACACATCCTGGTACAGTGAGCAGGCGTCCCTTGAGGCTCGGGAGGAGGCAGCTAGAGAAGTGCGCCGGGCCATCACAGGCCGCATCCCTGACAGTCTGAAGAACTGTGTGAACAAGGAGTATCTGATGGCAACACCCCAGTGGCCTGGTGTGGACCATGGGGCCGTGCACTCAGAACAGAACGGAGCTGCAGCTTACAGGTTCCCTACTGGCCTAGTGGGAGTGACAGCAGGAGGCCTGACAGGGGCAGGTGCTGCAGTGGAGGGAATTGTTGCAGGAAACCTGGCTATGGCACATGGGATTGCCCCCATGTCCCGACCCCCCCACACCCCATCGCCGGGGCAACCCTCTAaagcagaaacagacagagacatgccAACGGACCAGTAGCCCCCCAACTATCCCCAATCCCCCTCTTGTCCACAACATTCCGTCGTCACCCTTCATGTTCATTCAAGCTTATAGACAGACACTGGTATTGAGGTCCATTCTGACCTGGCTTTGGTCCCGTCCTACAGAACAGAATCCTTCAGGAGGGACAGAATCCTCGACTCCCTCCACACATCCTGTTTTCTCTCATCCAGAATGCAATAAGTGGATTACTCAAGGATTTTATTTTTCTTCCAGTTTGCTTTTTAAACCCCTCTGTGTCTGACGTTCATGTGGCTCAGTGGTTTTGTAAATTAGTCCTTTGTGGGAGACCTGTTCCAATTTTTTTCCTGTGTTATTTGCTTTTGTTATCTCTTTTGCTGTTTGACATGCTATAAAGTGAGGCATAAGTCTGGAACGGTATTGaagatgacccccccccccccccccccccccccccctcccactacTATTTGTTCACAAACCTTACAAAGGATTTTCTAATGTCGGACTCTACATTTTAGTCATCACAATAAAAGTGTGgctgtgatttatttttattttctagcTTTATGACATAAATTCAATAATATCACATTATATGCCTCTGCTgataaaacacagaaatatgcACAGTATATTTCTGTGTCAAAGACCACCACattcagtcgtggccaaaagttttgagaatgacacattcattttcaaagtttgctgcttcagtgtcttcagatatttttgtcagat
>XM_021617542.2
gtctggtctgcaaTACCTCCTGTGTTACGTGAAGGCGCCACACTCCACTAACAGTGGTTTATCAAGACTTCTCATTATTTTGTGACACCGACTCGTCCGTCACCTGACTCATCTGAACAAACTGTTTGGATTCATGACGATCCGTTAAGTGGGAAGACGTAAACTCATATTGACCCCCACAAGACCGAGATTAACAGAACCTGCAGTACTTGGCATTCGCCCCCCGATTTTGAATGGGCCGATGCACCCGCGCCCCCTAGTGGCACTGTTGGATGGTCGCGACTGCACCGTGGAGATGCCTGTCCTGAAGGACGTGGCCACGGTGGCCTTCTGTGATGCCCAGTCCACCCAGGAGATCCACGAGAAGGTGCTGAATGAAGCAGTGGGCGCCCTGATGTACCACACCATCACTCTCTCGCGGGACGACCTCGACAAGTTCAAGGGCCTGCGGATCATCGTGCGAATAGGCAGTGGCTTTGACAATGTGGACATCAAGGCCGCGGCTGAACTAGGTATAGCTGTGTGTAATGTGCCTGCCACGTCAGTGGAGGAGACAGCGGACACCTCCATGTGTCTGATCCTGAACCTTTACCGCCGCGTCACCTGGATGCACCAGGCTATGAGAGAGGGCACCAGGGCTTCCAGCGTGGAGCAGATCAGGGAGGTGGCCAGCGGCGCTGCCCGCATCCGGGGAGAGACGCTGGGTATCATAGGCCTGGGGCGAGTGGGCCAGGCTGTAGCGCTGCGAGCCAAGGCCTTTGGCTTCAGTGTGATATTCTACGACCCCTACCTGCCAGACGGAGTGGAACGCTCTCTGGGCCTGCAGAGAATGGCCACCCTGCAGGACCTTCTCATTCACTCTGATTGTGTGTCACTGCACTGCAGCCTCAACGAGCACAACCATCACCTCATCAACGACTTCACCATTAAACAGATGCGCCAGGGGGCATTTTTGGTGAACACGGCGCGAGGGGGCCTGGTGGATGAGAAGGCCCTGGCCCAGGCACTGAAAGAGGGAAGGATACGGGGTGCGGCCTTGGACGTACATGAGACGGAGCCCTTCAGCTTCTCTCAGGGCCCACTGAAGGACGCTCCCAATCTGATTTGCACCCCCCACACATCCTGGTACAGTGAGCAGGCGTCCCTTGAGGCTCGGGAGGAGGCAGCTAGAGAAGTGCGCCGGGCCATCACAGGCCGCATCCCTGACAGTCTGAAGAACTGTGTGAACAAGGAGTATCTGATGGCAACACCCCAGTGGCCTGGTGTGGACCATGGGGCCGTGCACTCAGAACAGAACGGAGCTGCAGCTTACAGGTTCCCTACTGGCCTAGTGGGAGTGACAGCAGGAGGCCTGACAGGGGCAGGTGCTGCAGTGGAGGGAATTGTTGCAGGAAACCTGGCTATGGCACATGGGATTGCCCCCATGTCCCGACCCCCCCACACCCCATCGCCGGGGCAACCCTCTAaagcagaaacagacagagacatgccAACGGACCAGTAGCCCCCCAACTATCCCCAATCCCCCTCTTGTCCACAACATTCCGTCGTCACCCTTCATGTTCATTCAAGCTTATAGACAGACACTGGTATTGAGGTCCATTCTGACCTGGCTTTGGTCCCGTCCTACAGAACAGAATCCTTCAGGAGGGACAGAATCCTCGACTCCCTCCACACATCCTGTTTTCTCTCATCCAGAATGCAATAAGTGGATTACTCAAGGATTTTATTTTTCTTCCAGTTTGCTTTTTAAACCCCTCTGTGTCTGACGTTCATGTGGCTCAGTGGTTTTGTAAATTAGTCCTTTGTGGGAGACCTGTTCCAATTTTTTTCCTGTGTTATTTGCTTTTGTTATCTCTTTTGCTGTTTGACATGCTATAAAGTGAGGCATAAGTCTGGAACGGTATTGaagatgacccccccccccccccccccccccccccctcccactacTATTTGTTCACAAACCTTACAAAGGATTTTCTAATGTCGGACTCTACATTTTAGTCATCACAATAAAAGTGTGgctgtgatttatttttattttctagcTTTATGACATAAATTCAATAATATCACATTATATGCCTCTGCTgataaaacacagaaatatgcACAGTATATTTCTGTGTCAAAGACCACCACattcagtcgtggccaaaagttttgagaatgacacattcattttcaaagtttgctgcttcagtgtcttcagatatttttgtcagat
>XM_021617540.2
ggtctggtctgcaaTACCTCCTGTGTTACGTGAAGGCGCCACACTCCACTAACAGTGGTTTATCAAGACTTCTCATTATTTTGTGACACCGACTCGTCCGTCACCTGACTCATCTGAACAAACTGTTTGGATTCATGACGATCCGTTAAGTGGGAAGACGTAAACTCATATTGACCCCCACAAGACCGAGATTAACAGAACCTGCAGTACTTGAACGCCGATGGCTCTCATGGATAAGCATAAAGTCAAGCGACAGAGGCTTGACCGCATTTGTGAAGGCATTCGCCCCCCGATTTTGAATGGGCCGATGCACCCGCGCCCCCTAGTGGCACTGTTGGATGGTCGCGACTGCACCGTGGAGATGCCTGTCCTGAAGGACGTGGCCACGGTGGCCTTCTGTGATGCCCAGTCCACCCAGGAGATCCACGAGAAGGTGCTGAATGAAGCAGTGGGCGCCCTGATGTACCACACCATCACTCTCTCGCGGGACGACCTCGACAAGTTCAAGGGCCTGCGGATCATCGTGCGAATAGGCAGTGGCTTTGACAATGTGGACATCAAGGCCGCGGCTGAACTAGGTATAGCTGTGTGTAATGTGCCTGCCACGTCAGTGGAGGAGACAGCGGACACCTCCATGTGTCTGATCCTGAACCTTTACCGCCGCGTCACCTGGATGCACCAGGCTATGAGAGAGGGCACCAGGGCTTCCAGCGTGGAGCAGATCAGGGAGGTGGCCAGCGGCGCTGCCCGCATCCGGGGAGAGACGCTGGGTATCATAGGCCTGGGGCGAGTGGGCCAGGCTGTAGCGCTGCGAGCCAAGGCCTTTGGCTTCAGTGTGATATTCTACGACCCCTACCTGCCAGACGGAGTGGAACGCTCTCTGGGCCTGCAGAGAATGGCCACCCTGCAGGACCTTCTCATTCACTCTGATTGTGTGTCACTGCACTGCAGCCTCAACGAGCACAACCATCACCTCATCAACGACTTCACCATTAAACAGATGCGCCAGGGGGCATTTTTGGTGAACACGGCGCGAGGGGGCCTGGTGGATGAGAAGGCCCTGGCCCAGGCACTGAAAGAGGGAAGGATACGGGGTGCGGCCTTGGACGTACATGAGACGGAGCCCTTCAGCTTCTCTCAGGGCCCACTGAAGGACGCTCCCAATCTGATTTGCACCCCCCACACATCCTGGTACAGTGAGCAGGCGTCCCTTGAGGCTCGGGAGGAGGCAGCTAGAGAAGTGCGCCGGGCCATCACAGGCCGCATCCCTGACAGTCTGAAGAACTGTGTGAACAAGGAGTATCTGATGGCAACACCCCAGTGGCCTGGTGTGGACCATGGGGCCGTGCACTCAGAACAGAACGGAGCTGCAGCTTACAGGTTCCCTACTGGCCTAGTGGGAGTGACAGCAGGAGGCCTGACAGGGGCAGGTGCTGCAGTGGAGGGAATTGTTGCAGGAAACCTGGCTATGGCACATGGGATTGCCCCCATGTCCCGACCCCCCCACACCCCATCGCCGGGGCAACCCTCTAaagcagaaacagacagagacatgccAACGGACCAGTAGCCCCCCAACTATCCCCAATCCCCCTCTTGTCCACAACATTCCGTCGTCACCCTTCATGTTCATTCAAGCTTATAGACAGACACTGGTATTGAGGTCCATTCTGACCTGGCTTTGGTCCCGTCCTACAGAACAGAATCCTTCAGGAGGGACAGAATCCTCGACTCCCTCCACACATCCTGTTTTCTCTCATCCAGAATGCAATAAGTGGATTACTCAAGGATTTTATTTTTCTTCCAGTTTGCTTTTTAAACCCCTCTGTGTCTGACGTTCATGTGGCTCAGTGGTTTTGTAAATTAGTCCTTTGTGGGAGACCTGTTCCAATTTTTTTCCTGTGTTATTTGCTTTTGTTATCTCTTTTGCTGTTTGACATGCTATAAAGTGAGGCATAAGTCTGGAACGGTATTGaagatgacccccccccccccccccccccccccccctcccactacTATTTGTTCACAAACCTTACAAAGGATTTTCTAATGTCGGACTCTACATTTTAGTCATCACAATAAAAGTGTGgctgtgatttatttttattttctagcTTTATGACATAAATTCAATAATATCACATTATATGCCTCTGCTgataaaacacagaaatatgcACAGTATATTTCTGTGTCAAAGACCACCACattcagtcgtggccaaaagttttgagaatgacacattcattttcaaagtttgctgcttcagtgtcttcagatatttttgtcagat

Function

NR:

description
PREDICTED: C-terminal-binding protein 2-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K04496 CTBP; C-terminal binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617541.2 False 2144 mRNA 0.53 9 9660229 9672896
XM_021617539.2 False 2402 mRNA 0.52 10 9660229 9676188
XM_021617542.2 False 2230 mRNA 0.53 9 9660229 9676189
XM_021617540.2 True 2296 mRNA 0.53 10 9660229 9676190

Neighbor

gene id symbol gene type direction distance location
LOC110533386 LOC106603904 coding downstream 3805 9620938 ~ 9659052 (-)
LOC110533389 LOC106603906 coding downstream 99380 9557541 ~ 9560849 (-)
LOC110533391 LOC106603909 coding downstream 214476 9429783 ~ 9445753 (-)
LOC110533398 LOC106603910 coding downstream 238905 9406884 ~ 9421324 (-)
LOC110533407 LOC106603912 coding downstream 276924 9381069 ~ 9383305 (-)
fam53c LOC106603902 coding upstream 554 9676744 ~ 9689487 (-)
slbp2 LOC106603940 coding upstream 15019 9691209 ~ 9694551 (-)
LOC110533396 LOC106603900 coding upstream 23757 9699947 ~ 9704496 (-)
nhp2 LOC106603897 coding upstream 76253 9752443 ~ 9754417 (-)
grpel2 LOC106603896 coding upstream 98365 9774555 ~ 9785863 (-)
G852000 NA non-coding downstream 9739 9649060 ~ 9650490 (-)
G852081 NA non-coding downstream 137649 9522037 ~ 9522580 (-)
G852070 NA non-coding downstream 161395 9498246 ~ 9498834 (-)
G852066 NA non-coding downstream 162475 9491579 ~ 9497754 (-)
G852157 NA non-coding upstream 27172 9703362 ~ 9773443 (-)
G852156 LOC106603899 non-coding upstream 30612 9706802 ~ 9722544 (-)
G852177 NA non-coding upstream 63609 9739799 ~ 9740888 (-)
G852184 NA non-coding upstream 83444 9759634 ~ 9759950 (-)
G852192 NA non-coding upstream 128114 9804304 ~ 9805010 (-)
G850763 NA other downstream 1228188 8431531 ~ 8432041 (-)
G850323 NA other downstream 1913605 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 2216612 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 2527664 7080591 ~ 7308250 (-)
G849536 NA other downstream 2645007 7014731 ~ 7015222 (-)
G852802 NA other upstream 786066 10462256 ~ 10462650 (-)
G853244 NA other upstream 1328919 11005109 ~ 11005658 (-)
G853740 NA other upstream 1766062 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 1905496 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 1939066 11615256 ~ 11620922 (-)

Expression


Co-expression Network