fam53c (LOC106603902)


Basic Information

Item Value
gene id fam53c
gene name LOC106603902
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9676744 ~ 9689487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617543.2
CGCTTGCTTTTTATTTAAAGCATAAATTCCGAGCTATTTTAATGTTGACATATTTTGTATGCACTATTGAATACTCACTGCttgcccccaccccacccccaactGTAAATGTTATTTATGAATTCCAATCGCTTACGGGCgtgtgaatgttttttttttttaaatggacgaCTGGATGAATTGCTTGTAGGCGATGTATTTTTCAAAGAGAGATAATATCTTTAGATATTTGGCACGCTGATCATATTACATTTTATGTTCCAGATATTGGAATCGACGAATGGTCTGTTACATGTTATGCTTTTTAATGGGTCAATACATCGGAGACCCATAGCCGAACACTAGCGCGGCTGACTAGTCGGGAACTGCACAGGCTACAAATTAGGTTTATCCTTCATGAGCAGTATTTAACCCGTGTGTGCAAGGCCTAAGGTCCGGTGGGCTTCTTGGTCAAGGTGAGCTGACTACAGTGATGAACATGCCCCAGTGAGACAGGGCAGGGCAACCTGGCCCAGAGGAGTACTGGAGGTGCCAGAATAGCTTGGATACTCACAATCAGACGGACGAACAGACAGAGGGCCACCCCTCCCCCTaaccctccacctcacccacctcCCCTACTCCTCGCAACCATGCCATGGTCACACTGATCGCCGAGCGTCTGCGGGAACATATTCTGGACGGCAACACTCACAAAACGGCCCTCAACGTGTCTCTGCTGGACCCCAACCTAGGAATTTGCTGGCCTGCAGATGGATTGATGCCTGAGAGCAGTTATTGGCAGTTCAGCCCTCCCTCCAAGCCTGGCCTGCAGGGTGTGCTGAGCTCCAGTTTCCCCCCTGGCCCTGTCCCTTTGGTTTCCCCCGAAACCCACCTCCCAGAGGGGGAAGCCCTGCACCGGCCCCTGGTCCCAAGCACCTCAGTAACGGACCTGTCTTTTCCCGGTGCACCCCCTCCCCCCCCGCCACCCCCCAAACGCCACTGTCGCTCACTGTCCGTGCCAGAGGACCTTTCACGCTGCCGTTACACCTGGCGGCCCAGCGCGTCGAGGGTCTGGACACCTGTGAATCGCCAATGCCACAGTGGAGGGGGAGCGGGGGGGCCTTGTCCGCTTCGTGCTCCTAGCTCGTCTCTAAActcctctctacactcctctTCAAGCCCCACATTCTTTAGCCTTGCTCTCTCCCCTGACTCCCCACTGCCCTGGAATTTCCCATGGGACCCAAGTGACACTGCTGGAGGAGGCGCCTGCTGCTGTTTCTTCCCCTCTCCGTCGTCCtgctcatcctctccctccccgctccaccctccccctcctccgcAGCGACGCTTCTCACTGTCCCCTGTCCTTATCAGAGAAGCTGCTGCTCAGTTCCTGCCCCCGCCTCCAGTTCCACCCCAATGTGCAGCACCCCCTCCAGTTGTGCCTGCTTCGCCCTCCTCTGCCTGCAGCACCCCGTCCTCTCTTCGCCGAGCCATCCCCCCTCAGCTCCCACGCTGCCACTCCCAGCCCTGCGACCTGCTTCTTCTCAAACCGGGCCTGAAGCGACGGCGTGACCCAGACAGACCATTTGCCCGGCCAGTACTGGATTTCACCAAGATGACTCAGACTCGCAGTACCGACCCCTTGAGTTGTATGGAGCGTGGGAGGCTGGCTTCTGGGGGGGACGTTTGCATGGGCCTTGAGCCTTTCTGGGGGGATTTCAGAGGGTCATGTTCACCAGCAGAGGGGCTGGGAAGGACGAGCATTGGACCTCTAAGCGAGAGTGATgaggagggtgaagagggggaggaagaggaggaccctGATCGAGAAGAGTGTCAGCCGAGTGTCTTTGAGAGGGATTGTACAGAACTAGATTTGAGCCTAATTGAAGAAAATTAAAATCTTGTTAATTGGAGACTGTTTTTCCCCTCTAGCCCCAGCATTCAACACTCCACCCCAGCCCTGCTCCGCTTTCATCAGCAGGGCTCTCAGGAACACGACTTCTCTCTCATGGGATGAGCTTGGGTGTATATATATAATCTCATTGACAACAGTCATGAATTGCCTACTACCAATAAGAACAATTCATGCAAGTAGCCATGGATGCGGTCTTTCCATCAGAGTACATTCCAGAACCAGTTGCTGAAACATTCTTGTGAATAATCTGAATGCTGGAGATGCCAGCTATTCCCGTAGTGTGTGTTGAATGGCTTCTTAATGCGCCCTCAAACAGACTAGGATGGAATGTTAGAAGACCAACAACCTTCTGGTCACTTGCTTTCTTTTACATGACTTTTACAATCCTCTTGATTGTCTTTTTCGGTACAGTAGTAAGAATAGACTTTCTTGAATGATGGTGATGAATTGAATATCTGTGTTTTGTTAAGTTTGATGCAGAAGGGCAGTATGTCATTGCAGTTTTATTCCTGCGGTCCTTATATTTCCTGGTAAACAATCCACATGATTCAGCATAAGCCTTAAGAACAACTTTTTTtctgtaaacaaaaaaaaaaatactatgaAAATGAAATGAATTGTGTAGCAGTTGATATTAGTccttttgttatttattttctgCTGTTTTCTTAATATTTCTTATCTCTAGGACTCGTCCTCTGAATATAGAGATGTATAGACATTGATAATGAATGCACTGTGTTTGACAAGTTAAACAAAAACCTGAAAATGGGAAGCAACCACTGAGGGCACATTGTAATATTGTATTATACAGCGATCATTTTGTTGAAAACAAGTTATGTGTAAAGCTGGTAGCTGACAGACCCGGGGAAGGCCATTGCTGTCTTTTAGAGATGTTTTTTATTGTATGTGTTAAAAAGATGGTGATTTCAAACTCCGTTTGTGTATAAATAAAGTTTATTGGAAATTATTTTACAAGGAAAGGAAA

Function

NR:

description
protein FAM53C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617543.2 True 2894 mRNA 0.49 5 9676744 9689487

Neighbor

gene id symbol gene type direction distance location
LOC110533392 LOC106603903 coding downstream 554 9660229 ~ 9676190 (-)
LOC110533386 LOC106603904 coding downstream 20320 9620938 ~ 9659052 (-)
LOC110533389 LOC106603906 coding downstream 115895 9557541 ~ 9560849 (-)
LOC110533391 LOC106603909 coding downstream 230991 9429783 ~ 9445753 (-)
LOC110533398 LOC106603910 coding downstream 255420 9406884 ~ 9421324 (-)
slbp2 LOC106603940 coding upstream 1722 9691209 ~ 9694551 (-)
LOC110533396 LOC106603900 coding upstream 10460 9699947 ~ 9704496 (-)
nhp2 LOC106603897 coding upstream 62956 9752443 ~ 9754417 (-)
grpel2 LOC106603896 coding upstream 85068 9774555 ~ 9785863 (-)
afap1l1b LOC106603893 coding upstream 97141 9786628 ~ 9824009 (-)
G852000 NA non-coding downstream 26254 9649060 ~ 9650490 (-)
G852081 NA non-coding downstream 154164 9522037 ~ 9522580 (-)
G852070 NA non-coding downstream 177910 9498246 ~ 9498834 (-)
G852066 NA non-coding downstream 178990 9491579 ~ 9497754 (-)
G852157 NA non-coding upstream 13875 9703362 ~ 9773443 (-)
G852156 LOC106603899 non-coding upstream 17315 9706802 ~ 9722544 (-)
G852177 NA non-coding upstream 50312 9739799 ~ 9740888 (-)
G852184 NA non-coding upstream 70147 9759634 ~ 9759950 (-)
G852192 NA non-coding upstream 114817 9804304 ~ 9805010 (-)
G850763 NA other downstream 1244703 8431531 ~ 8432041 (-)
G850323 NA other downstream 1930120 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 2233127 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 2544179 7080591 ~ 7308250 (-)
G849536 NA other downstream 2661522 7014731 ~ 7015222 (-)
G852802 NA other upstream 772769 10462256 ~ 10462650 (-)
G853244 NA other upstream 1315622 11005109 ~ 11005658 (-)
G853740 NA other upstream 1752765 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 1892199 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 1925769 11615256 ~ 11620922 (-)

Expression


Co-expression Network