slbp2 (LOC106603940)


Basic Information

Item Value
gene id slbp2
gene name LOC106603940
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9691209 ~ 9694551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989647.1
ctgaTACTAATTACAACAAGGGGTTGGTCAATGCCTCTTTTGTCTGGCGTTCCAGCGCTGCCCCCTGGCTTCAGGTCCAGACCACCTTCTTATCCAAGCAGCCCTGAACCTTGGCTTCTCCCAGGATGTAGCTCTGTGTATGACAGTCTGGTCAgTAATACAGCCCCAGCCATGCCTCCCTCCCCCATTAATGGAGAAAGAGGACCTGCCCCTGCTATGCAAAAGCTACGCAGGTCCTCCATCCTTGAGCGATGTATCCTTAGGATGTCTACTGCAAGTGTTGCTGTTGGAACGGAAGACATGGATGGCGTCAGGAGGTCCCAGGCAGGGATGCGTTTGGCCCCACGAAACCTGGATCCAGCTCACATGGAAGGCAATGAATCTGTTCTGAAACGACGGCAGAAACAGGTTCAGTACGGCAAGAACACCGCTGGCTACCAGAATTACCTGGAGCAAGTTCCCAAGCGTTTGAGAATCCCTGGGCTGCACCCATCCACTCCAAACAAATATAGAAAGTACAGCCGCCGATCTTGGGACATGCAGGTTCGCCTTTGGCGGAGAGCTCTGCATGCGTGGGACCCTCTGTCTGAAGCGCATGGAGAAGTGGAGGAACAAGACCCTCTTGACCAACTGCAGGGGTTGCTTGAGCAGATGAATTGCGAGCTATATGAAGACTATAGTGGTAAAGAGAGGACCAGAGGGATGCTGTCAAACTCCAAAGCCCCCTTCTCCTCTAAGCCTCCAGTAATGTCATTCAACAGTCCCTGGATGTTTCCCCATGGATCTCAGGTGGATGTGTCGGGTCCTCAGGTGCCATCCTCCCAGCCAggcttggggtatgcctttagCAGTCATCTAACGGCTGATGAGAATGTGGTGGGATGGCTAAGATTTCTCCTGGAAACTGACCACTCCCGCGATCAACAGGCGCCCCTGCAGGGCGACCGGCTACTGTGGAAGCCGTACTGATCATTGCTGTCAGTCACAGCGGTAGATCTTTTGGGTATATCCTAATAGACTTGCAGGGTTGCACTGGGTGTTGTGCTGACTATGAAAGGGATGATTGCTGTAAAATATTTACCACTTTTGGGTTCACTTTTTACACTTTGGTTATGGTTCTGTAGCGCACATTTTCAAACTGCTTCACTAATCATGTACCTACATTGATGTCTATTTTGGACCACTGTAATGCACTTTTTTTGCACCATTTACCTTTGTCACAATTACATTTAAGTTATGTTAGGTTTTCACTGCCCCATCCTCTAAAACAGGATTCTATTCTGACCTGCCTAAATTCTGTTTTCTCTCTAAAGAGTAAAAATGTATTAGCTTTATGTTGCGTTTTGCACACCAGCCACATCACCATGTTCACCAGTCTGTGACCCAACTGACTGTCAGGCTCTATACGGTCTCATGCACCATCCTCTCCTGCCTACCTAGCTGTTTTTCTAAAAACAATGTCGATGGGGAAAATGCTATCACTTTGTTtagtagttttttttttattcattttttttcttaATTGTCTTTTTGTACAACCTGAGTACTGATGCAAAACGAAATTAATAAAGATATGTTCCAAATTGAA
>XM_021617558.2
GGTGCCACACCCCTGCAGCCCCGCCCTGATGGCACCTGGCGTTAATTTAAAACCTTTCCTTGCCGCAATGGGGAATTTACTGCGTGGCTGCAGCCAAATATATCATGTCAACAAGCGTCGAATCCGCATTTCAAGGTCCATTTATGGAGTCgagGGGTTGGTCAATGCCTCTTTTGTCTGGCGTTCCAGCGCTGCCCCCTGGCTTCAGGTCCAGACCACCTTCTTATCCAAGCAGCCCTGAACCTTGGCTTCTCCCAGGATGTAGCTCTGTGTATGACAGTCTGGTCAgTAATACAGCCCCAGCCATGCCTCCCTCCCCCATTAATGGAGAAAGAGGACCTGCCCCTGCTATGCAAAAGCTACGCAGGTCCTCCATCCTTGAGCGATGTATCCTTAGGATGTCTACTGCAAGTGTTGCTGTTGGAACGGAAGACATGGATGGCGTCAGGAGGTCCCAGGCAGGGATGCGTTTGGCCCCACGAAACCTGGATCCAGCTCACATGGAAGGCAATGAATCTGTTCTGAAACGACGGCAGAAACAGGTTCAGTACGGCAAGAACACCGCTGGCTACCAGAATTACCTGGAGCAAGTTCCCAAGCGTTTGAGAATCCCTGGGCTGCACCCATCCACTCCAAACAAATATAGAAAGTACAGCCGCCGATCTTGGGACATGCAGGTTCGCCTTTGGCGGAGAGCTCTGCATGCGTGGGACCCTCTGTCTGAAGCGCATGGAGAAGTGGAGGAACAAGACCCTCTTGACCAACTGCAGGGGTTGCTTGAGCAGATGAATTGCGAGCTATATGAAGACTATAGTGGTAAAGAGAGGACCAGAGGGATGCTGTCAAACTCCAAAGCCCCCTTCTCCTCTAAGCCTCCAGTAATGTCATTCAACAGTCCCTGGATGTTTCCCCATGGATCTCAGGTGGATGTGTCGGGTCCTCAGGTGCCATCCTCCCAGCCAggcttggggtatgcctttagCAGTCATCTAACGGCTGATGAGAATGTGGTGGGATGGCTAAGATTTCTCCTGGAAACTGACCACTCCCGCGATCAACAGGCGCCCCTGCAGGGCGACCGGCTACTGTGGAAGCCGTACTGATCATTGCTGTCAGTCACAGCGGTAGATCTTTTGGGTATATCCTAATAGACTTGCAGGGTTGCACTGGGTGTTGTGCTGACTATGAAAGGGATGATTGCTGTAAAATATTTACCACTTTTGGGTTCACTTTTTACACTTTGGTTATGGTTCTGTAGCGCACATTTTCAAACTGCTTCACTAATCATGTACCTACATTGATGTCTATTTTGGACCACTGTAATGCACTTTTTTTGCACCATTTACCTTTGTCACAATTACATTTAAGTTATGTTAGGTTTTCACTGCCCCATCCTCTAAAACAGGATTCTATTCTGACCTGCCTAAATTCTGTTTTCTCTCTAAAGAGTAAAAATGTATTAGCTTTATGTTGCGTTTTGCACACCAGCCACATCACCATGTTCACCAGTCTGTGACCCAACTGACTGTCAGGCTCTATACGGTCTCATGCACCATCCTCTCCTGCCTACCTAGCTGTTTTTCTAAAAACAATGTCGATGGGGAAAATGCTATCACTTTGTTtagtagttttttttttattcattttttttcttaATTGTCTTTTTGTACAACCTGAGTACTGATGCAAAACGAAATTAATAAAGATATGTTCCAAATTGAA
>XM_021617559.2
GGTGCCACACCCCTGCAGCCCCGCCCTGATGGCACCTGGCGTTAATTTAAAACCTTTCCTTGCCGCAATGGGGAATTTACTGCGTGGCTGCAGCCAAATATATCATGTCAACAAGCGTCGAATCCGCATTTCAAGGTCCATTTATGGAGTCgagGGGTTGGTCAATGCCTCTTTTGTCTGGCGTTCCAGCGCTGCCCCCTGGCTTCAGGTCCAGACCACCTTCTTATCCAAGCAGCCCTGAACCTTGGCTTCTCCCAGGATGTAGCTCTGTGTATGACAGTCTGGTCAgGTCCTCCATCCTTGAGCGATGTATCCTTAGGATGTCTACTGCAAGTGTTGCTGTTGGAACGGAAGACATGGATGGCGTCAGGAGGTCCCAGGCAGGGATGCGTTTGGCCCCACGAAACCTGGATCCAGCTCACATGGAAGGCAATGAATCTGTTCTGAAACGACGGCAGAAACAGGTTCAGTACGGCAAGAACACCGCTGGCTACCAGAATTACCTGGAGCAAGTTCCCAAGCGTTTGAGAATCCCTGGGCTGCACCCATCCACTCCAAACAAATATAGAAAGTACAGCCGCCGATCTTGGGACATGCAGGTTCGCCTTTGGCGGAGAGCTCTGCATGCGTGGGACCCTCTGTCTGAAGCGCATGGAGAAGTGGAGGAACAAGACCCTCTTGACCAACTGCAGGGGTTGCTTGAGCAGATGAATTGCGAGCTATATGAAGACTATAGTGGTAAAGAGAGGACCAGAGGGATGCTGTCAAACTCCAAAGCCCCCTTCTCCTCTAAGCCTCCAGTAATGTCATTCAACAGTCCCTGGATGTTTCCCCATGGATCTCAGGTGGATGTGTCGGGTCCTCAGGTGCCATCCTCCCAGCCAggcttggggtatgcctttagCAGTCATCTAACGGCTGATGAGAATGTGGTGGGATGGCTAAGATTTCTCCTGGAAACTGACCACTCCCGCGATCAACAGGCGCCCCTGCAGGGCGACCGGCTACTGTGGAAGCCGTACTGATCATTGCTGTCAGTCACAGCGGTAGATCTTTTGGGTATATCCTAATAGACTTGCAGGGTTGCACTGGGTGTTGTGCTGACTATGAAAGGGATGATTGCTGTAAAATATTTACCACTTTTGGGTTCACTTTTTACACTTTGGTTATGGTTCTGTAGCGCACATTTTCAAACTGCTTCACTAATCATGTACCTACATTGATGTCTATTTTGGACCACTGTAATGCACTTTTTTTGCACCATTTACCTTTGTCACAATTACATTTAAGTTATGTTAGGTTTTCACTGCCCCATCCTCTAAAACAGGATTCTATTCTGACCTGCCTAAATTCTGTTTTCTCTCTAAAGAGTAAAAATGTATTAGCTTTATGTTGCGTTTTGCACACCAGCCACATCACCATGTTCACCAGTCTGTGACCCAACTGACTGTCAGGCTCTATACGGTCTCATGCACCATCCTCTCCTGCCTACCTAGCTGTTTTTCTAAAAACAATGTCGATGGGGAAAATGCTATCACTTTGTTtagtagttttttttttattcattttttttcttaATTGTCTTTTTGTACAACCTGAGTACTGATGCAAAACGAAATTAATAAAGATATGTTCCAAATTGAA

Function

NR:

description
histone RNA hairpin-binding protein-like isoform X2

GO: NA

KEGG:

id description
K18710 SLBP; histone RNA hairpin-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989647.1 False 1588 mRNA 0.47 8 9691209 9694251
XM_021617558.2 False 1722 mRNA 0.48 8 9691209 9694551
XM_021617559.2 True 1644 mRNA 0.48 7 9691209 9694551

Neighbor

gene id symbol gene type direction distance location
fam53c LOC106603902 coding downstream 1722 9676744 ~ 9689487 (-)
LOC110533392 LOC106603903 coding downstream 15019 9660229 ~ 9676190 (-)
LOC110533386 LOC106603904 coding downstream 34785 9620938 ~ 9659052 (-)
LOC110533389 LOC106603906 coding downstream 130360 9557541 ~ 9560849 (-)
LOC110533391 LOC106603909 coding downstream 245456 9429783 ~ 9445753 (-)
LOC110533396 LOC106603900 coding upstream 5396 9699947 ~ 9704496 (-)
nhp2 LOC106603897 coding upstream 57892 9752443 ~ 9754417 (-)
grpel2 LOC106603896 coding upstream 80004 9774555 ~ 9785863 (-)
afap1l1b LOC106603893 coding upstream 92077 9786628 ~ 9824009 (-)
LOC110534842 LOC106603895 coding upstream 124993 9819544 ~ 9941581 (-)
G852000 NA non-coding downstream 40719 9649060 ~ 9650490 (-)
G852081 NA non-coding downstream 168629 9522037 ~ 9522580 (-)
G852070 NA non-coding downstream 192375 9498246 ~ 9498834 (-)
G852066 NA non-coding downstream 193455 9491579 ~ 9497754 (-)
G852157 NA non-coding upstream 8811 9703362 ~ 9773443 (-)
G852156 LOC106603899 non-coding upstream 12251 9706802 ~ 9722544 (-)
G852177 NA non-coding upstream 45248 9739799 ~ 9740888 (-)
G852184 NA non-coding upstream 65083 9759634 ~ 9759950 (-)
G852192 NA non-coding upstream 109753 9804304 ~ 9805010 (-)
G850763 NA other downstream 1259168 8431531 ~ 8432041 (-)
G850323 NA other downstream 1944585 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 2247592 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 2558644 7080591 ~ 7308250 (-)
G849536 NA other downstream 2675987 7014731 ~ 7015222 (-)
G852802 NA other upstream 767705 10462256 ~ 10462650 (-)
G853244 NA other upstream 1310558 11005109 ~ 11005658 (-)
G853740 NA other upstream 1747701 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 1887135 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 1920705 11615256 ~ 11620922 (-)

Expression


Co-expression Network