LOC110533396 (LOC106603900)


Basic Information

Item Value
gene id LOC110533396
gene name LOC106603900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9699947 ~ 9704496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617550.2
GAATTCGAGTTCGGGAAAGAAAATGCAATTTATACTTTGCTAGCTAAGTACTTATCTTCAACCTAGCCTGGATATATGTATGCATCGTGTCTGCCTCCATCACGATCAGTCACTTGCGAGCCTGATACCGTGAACCACACATAGCTAATGTGCTTTATACgtgtaacattagctaggctacttGTTTGTTTTGCCATTTTATAGTTAGCTAACGGCTGCGCTAACGAACCAGATTGCAAGCTAGTAGCTAGTCTATTTATGCTACCAGCTGGCTAACGGCTAACGGCTGCGCTAACGAACCAGATTGCAAGCTAGTAGCTAGCTATTTATGCTACCAGCTGGCTAACGGCTAACGGCTGCGCTAACGAACCAGATTGCAAGCTAGTAGCTAGCTATTTATGCTACCAGCTGGCTAGCTGTacagttttttgtttgacatggcTTTCCCTGATTCGATAGCTGTCCACGATGCGTTCATTCTCCTCGCCAGCTTCTTTGCATTGTGCCTCAAGTTTGGGTTTGCGTTTGTGGAGGCAGGCAAAACAGATCCAAAGAACGTCTCCAATGTCATCTTTAAAAATGTAGCAGACACATTTGTCACCTTGCTGGCTTTCTTTCTCCATGGCTATGCATTTGCCTTTGGGGAGCACAACGCTGTTATCGGAACCCAATTCTTCCTCACACTGAACAAGACAAACATGGTAAACTTCTTCTTCAACTATGTCCGCTGTGCTATAGCCACTACTCTGGCACTAGGGGCTGCCAACGAGAGGACAGAACCAATCGGCTACCTCATATCCGCATACGTTTTCTCAGGAATAATCTACCCTCTGGCTTGTCACTGGGTCTGGGACCAGCAAGGCATCTTCAGTCCAACCTCCACCTCCTACCCATCACAGGACTATGCAGGCAGCGGTGTGATCTTCTTGCTGGGTGGTGCAGCGGCAGCTGTCTCACTGCGGGTTATAGGATCACGGGCTGGACGCTGGAGTCCCCATTTCAAACGGACAGAGCACAGCCAGCCTATGGTGGTGCTGGGAGGATGCCTTCAAATGCTGGGCTTCTTGGGCCTGGTGATAGGCACTCACCCCCGTGTGTTGGATGCTGATGAGGGCCTGTTACTGGGGCTAGGCACTGTAAACTTGCTGCATGCTGCTACAAGCGGAGGACTCTACGGACTAATGATCCAACGCATCGATAAGAACTACTATGATCTCGACAGCATGCTCTCTGGGGCCATTGCTGGCATGGTGGCAGTGTGTGCAGGAGTAGACACCTACATGCCTGGTGTGGCAGTCATGTGTGGGGCCACTGGATCTCTCCTCTTTATTGGCTTTCGCCGCTTCCTCTGTGCTGTGAGGGTGGATGACCCCCTTAACATCATCTCCGGGTACTTAATTCCAGGGGCCTGGGGCTTGATGCTTGCAGGTTTATTCTCTGATCATGGGGCTCTTGGAGGACATATCCAGGTGTTGGGGAACAATTGCATTGTGGCACTGGTGTTATTCTTCTGGGCAGTGGCTATTATGTACCCTCTTCTCTCCATACTCATGTGTTTTGGAGTGCTGCGAGTCCCCCGCTTTATGGAGAAACAAGgaaTAGACAAAATCAGACACACGCTAAGACACCCTCACGGCACCAGGAAGTCACTGAACTAACCCCAGACAGAAACATCAATCCAGAGGCAATGAAGTTAAACCTGGGGATAatttttgaatgtttttttctAAACAATTTCTTAATGCATAACTAAAACATTTGTTAGCAAGCATATTTGTTCCAGAGTAACCCTCTTTTGTTTGCACCATAGTTTCATATTGAGAAGGATGGCAGTACAAAATATTTACAAAGTCAAACAATTTATTGTATGAATTACAGATGTCTTGAGTAAGGCAAACACTACTACACACAATTGCCCCATGTTTCTAGGTGGAATTTATTAGGGAAGCATTTAGTTGTGAGGTTGTTATTTGGGGGCCGAACAGTTGaaaagtcaaataaaataaaatgc

Function

NR:

description
putative ammonium transporter 1

GO: NA

KEGG:

id description
K03320 amt, AMT, MEP; ammonium transporter, Amt family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617550.2 True 2011 mRNA 0.47 10 9699947 9704496
Loading

Neighbor

gene id symbol gene type direction distance location
slbp2 LOC106603940 coding downstream 5396 9691209 ~ 9694551 (-)
fam53c LOC106603902 coding downstream 10460 9676744 ~ 9689487 (-)
LOC110533392 LOC106603903 coding downstream 23757 9660229 ~ 9676190 (-)
LOC110533386 LOC106603904 coding downstream 43523 9620938 ~ 9659052 (-)
LOC110533389 LOC106603906 coding downstream 139098 9557541 ~ 9560849 (-)
nhp2 LOC106603897 coding upstream 47947 9752443 ~ 9754417 (-)
grpel2 LOC106603896 coding upstream 70059 9774555 ~ 9785863 (-)
afap1l1b LOC106603893 coding upstream 82132 9786628 ~ 9824009 (-)
LOC110534842 LOC106603895 coding upstream 115048 9819544 ~ 9941581 (-)
LOC110533312 LOC106603939 coding upstream 254181 9958677 ~ 9966932 (-)
G852000 NA non-coding downstream 49457 9649060 ~ 9650490 (-)
G852081 NA non-coding downstream 177367 9522037 ~ 9522580 (-)
G852070 NA non-coding downstream 201113 9498246 ~ 9498834 (-)
G852066 NA non-coding downstream 202193 9491579 ~ 9497754 (-)
G852156 LOC106603899 non-coding upstream 2306 9706802 ~ 9722544 (-)
G852177 NA non-coding upstream 35303 9739799 ~ 9740888 (-)
G852184 NA non-coding upstream 55138 9759634 ~ 9759950 (-)
G852192 NA non-coding upstream 99808 9804304 ~ 9805010 (-)
G852198 NA non-coding upstream 107869 9812365 ~ 9813152 (-)
G850763 NA other downstream 1267906 8431531 ~ 8432041 (-)
G850323 NA other downstream 1953323 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 2256330 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 2567382 7080591 ~ 7308250 (-)
G849536 NA other downstream 2684725 7014731 ~ 7015222 (-)
G852802 NA other upstream 757760 10462256 ~ 10462650 (-)
G853244 NA other upstream 1300613 11005109 ~ 11005658 (-)
G853740 NA other upstream 1737756 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 1877190 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 1910760 11615256 ~ 11620922 (-)

Expression

LOC110533396(LOC106603900) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110533396(LOC106603900) Expression in each Bioproject

Bar chart with 19 bars.
LOC110533396(LOC106603900) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Co-expression Network