LOC110533330 (LOC106603879)


Basic Information

Item Value
gene id LOC110533330
gene name LOC106603879
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 10760682 ~ 10849833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617439.2
GGGAGCACTGGGAGCCAAGATGGCGTCGCTGTGAACCAAGATGGCGTCTGACAAACATAGAGAGACCCTTGCAGGCAGCAGTGGAGCACAGGGAGCCAAGATGGTGTCGCTGTAAGAGGgagtgactgacagacagagagagaaccttGCAGGGAGCACTGGGAGCCAAGATGGCATCGCTGTGAGAGGgagtgactgacagacagagagagaaccttGCAGGGAGCACTGGGAGCCAAGATGGCGTCGCTGTGAGAGGGAGTGactgacagatagagagagaacctTGCAGGGAGCACTGGGAGCCAAGATGGCATCGCTGTAAGAGGGAGTGACTGACAGAGAACCTTGCAGGGAGCACTGGGAGCCAAGATGGCATCGCTGTGAGAgggagtgactgacagagagagaccctTGCAGGAAACAGTGGATCACAGGGAGCCAAGATGGCGTCGCTGTGAGAGGGAGTGACTAACAGAGAGAGACCCTTGCAGGCAGCAGTGGAGCACAGGGTGCCAAGGTGGCATCATTGTGAGAGGgagtgactgacagacagagagaggccctTGCAGGCAGCAGTGGAGCACCCGTTGTGGTTTGGCGGCAAAGTCACACGTCGAGGCGAAACCGGGTGATCCTAGACGACAAGAGGAAACTGACCCTGTTATGCAAGCGGACTGAGGCAAAATAACGACCTGCTCACACACCCTGCTCTGCCTGCACTGATTTATGGCGCATCTGGCAATGGAGAGGAAAATACGCAGCTATAATCTTTCTGTTGGTTTTATAGTTCGTTTTCTCACACTTTAATCTGAGCCCCATCGTGCCTGACATCCAACGCCACACCTTCCAACGTCTCGAAAGGGACAGGCATTTCCATCTATCACATTGATACGAACGGTGAGGTTTCTGCCTCTTTTTCACGTTCTTATTTCTGTAAAGGGTCGAATCATGACGAACAGCGTGCAGCTCGCGCCGACCCTGTGCTGAAGCGATGTTTCAGGACCATGGATACCTGTTTCTCTTTTTCTGgtttacaaaataaaaacacaaatggATGAAGAAATCGACACCCGCAAAATCAACAACAGCTTCCTCCGGGACCACAACTATGCAACTGAAGCTGACATCATATCCACGGTTGAGTTCAACTCGACTGGAGAGCTGCTGGCGACCGGGgacaagggagggagagtagtggtGTTTCAGAGAGAACAGGAGAGTAAGAACCAGCCCCACAGGAGAGGGGAGTATAATGTTTACAGCACCTTCCAGAGCCACGAGCCTGAGTTTGACTACCTGAAGAGCCTGGAGATCGAGGAGAAGATCAACAAGATACGATGGCTGCCTCAACAGAACGCTGCCtacttcctcctctccaccaatGATAAAACAGTGAAGCTGTGGAAGGTCAGTGAGCGGGACAAGAGACCAGAGGGCTACAACCTGAAGGACGAGGAAGGGAGGATCCGAGACCCCACCACCATCACCGCCCTGCGGgtaCCAGTGCTGCAGCCCATGGACCTGATGGTGGAAGCCACTCCCAGGCGAGTATTCTCCAATGCCCACACGTACCACATCAACTCCATCTCTGTGAACAGTGACTACGAGACCTACATGTCCACAGATGACCTGAGAATTAACCTGTGGAACCTGGAGATCACCAACCGAAGTTTCAACATCGTGGACATCAAGCCGGCTAACATGGAGATGCTGACGGAGGTGATCACAGCAGCAGAGTTCCAACCCAGCCAGTGTAACACCTTCGTTTACAGCAGCAGCAAGGGTTCCATCCGGCTGTGTGACATGAGGGCCTCAGCACTGTGTGACAACCACTCCAAATTGTTCGAGGAGCCAGAGGACCCCAGTAACCGCTCCTTCTTCTCCGAGATCATATCGTCCATCTCAGACGTGAAGTTCAGCCACAGCGGCCGCTACCTGATGACACGGGACTACCTCACGGTCAAGGTGTGGGACCTCAACATGGAGAGCAAACCTCTGGAGACCTACCAGGTCCACGACTACCTGAGGAGTAAGCTGTGCTCCCTGTATGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTCTGGAACGGGTCTGACAGTGTGATCATGACCGGCTCGTACAACAACTTCTTCCGCATGTTCGACCGCAACACCAAGCGTGACGTGACCCTGGAGGCGTCGAGGGAGAACAGCAAGCCCCGGGCCATCCTGAAGCCCAGGAAAGTGTGTGTAGGGGGCAAGAGACGCAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAGCAAGAAGATCCTGCACAGCGCCTGGCACCCCTCTGAGAACATCATCGCTGTGGCCGCCACCAACAACCTCTACATATTCCAAGACAAGGTCAactaatggatggatggatgggtggagagCAACACAGACCAGCATAGCGCCCCCTGACTGGCTGATCACACTCACCTGGGAGAGGGCCGCAAAGGCTGGGAATCTCTGGCCGCACTGCAACTTGTGAAGGGACACTGACAGCTTTGCAGTTCTCTTCTTTCGCTCCATCTCAAGAGACTTGCACCCATGTTGTAAATCTAGGGTTGCCCTCTGTTGCATCCAGAACACTGAAGAACGATGGctccattttaaaatgttcacccTTCTTAAGTTGTTGCTGTAGTTTAAGGTTATGCACATAAATGCAGGGACAATACTTTTTTGTTCCTTAGAAGCTTTGCATTGGGGAGATGAACTGAAGAGACTGGCTCAACAAACTCATAACCTTTACATCCCTGATGACATGCCTAGACACTACTGAGATGGTGTGCTCTTGACGCCCTTTgacctctctctgccccttccgtttcatttatttttttctcttcatGAAGGTTTTAAAACATGCAGAGGAAGTGATGTTACCAGGTAGTATTGATTAAAACAATGTAGCAAGCTTTTTGTTCCAATTTTTTAAAGAACTTTACAAAATGtcgaataaaaaaaaataataataggta

Function

NR:

description
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2

GO: NA

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617439.2 True 2999 mRNA 0.52 9 10760682 10849833
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118966706 NA coding downstream 51606 10707542 ~ 10709076 (-)
LOC118936914 NA coding downstream 211381 10547571 ~ 10549301 (-)
LOC110533324 LOC106603889 coding downstream 605440 10146911 ~ 10155242 (-)
LOC110533312 LOC106603939 coding downstream 793750 9958677 ~ 9966932 (-)
LOC110534842 LOC106603895 coding downstream 819101 9819544 ~ 9941581 (-)
LOC110533336 LOC106603872 coding upstream 138956 10988789 ~ 10993793 (-)
bod1 LOC106603873 coding upstream 176254 11026087 ~ 11029511 (-)
LOC118936915 NA coding upstream 240188 11090021 ~ 11091274 (-)
LOC110533343 LOC106603867 coding upstream 617548 11467381 ~ 11474701 (-)
LOC110533344 LOC106603866 coding upstream 712103 11561936 ~ 11564213 (-)
G853138 NA non-coding downstream 14666 10745146 ~ 10746016 (-)
G853086 NA non-coding downstream 88670 10671316 ~ 10672012 (-)
G853085 NA non-coding downstream 91476 10669007 ~ 10669206 (-)
G853083 NA non-coding downstream 93662 10666327 ~ 10667020 (-)
G852890 NA non-coding downstream 146552 10613872 ~ 10614130 (-)
G853179 NA non-coding upstream 14118 10863951 ~ 10864293 (-)
G853202 NA non-coding upstream 54778 10904611 ~ 10905031 (-)
G853222 NA non-coding upstream 113443 10963276 ~ 10963581 (-)
G853237 NA non-coding upstream 147466 10997299 ~ 10997679 (-)
G853238 NA non-coding upstream 150783 11000616 ~ 11000984 (-)
G852802 NA other downstream 298032 10462256 ~ 10462650 (-)
G850763 NA other downstream 2328641 8431531 ~ 8432041 (-)
G850323 NA other downstream 3014058 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 3317065 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 3628117 7080591 ~ 7308250 (-)
G853244 NA other upstream 155276 11005109 ~ 11005658 (-)
G853740 NA other upstream 592419 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 731853 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 765423 11615256 ~ 11620922 (-)
G854402 NA other upstream 935287 11785120 ~ 11785853 (-)

Expression

LOC110533330(LOC106603879) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110533330(LOC106603879) Expression in each Bioproject

Bar chart with 17 bars.
LOC110533330(LOC106603879) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network