LOC110533344 (LOC106603866)


Basic Information

Item Value
gene id LOC110533344
gene name LOC106603866
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 11561936 ~ 11564213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617455.2
GTGAGAGAGGCAGAACGGGAGGCGCTGCCAATGGAAATAGCTCACTAACAGCAAGGAGCCAGAGAACCGAGCCTGCCTCTATGTCAGGGCCACTTACCTGCAAGGTGCGCATCGAAGATGATGACCATGAACGGAAAGCAGCATTTCTCTATGCACCCTGTGCTGCAGGAGCCCAAATACTCTGGCCTGCACGCGAGTTCGGAAGGCATGCGCAGAGTTTGTCTGCCTGCCCCGCAGCTCCAGGGCAATATCTTCGGTGGCTTTGATGAGAGTCTACTGGCACGCGCGGAAGCTCTGGCGGCTGCTGACATAGTCTCTCACGGCAAGAGTCACCATTTCAAGCCAGACGTGACTTACCATACCATGAGTAGTGTCCCCTGCACCTCCAACTCCTCTACGGTGCCCATCTCCCATCCTTCCACCCTGACCtctcaccaacaccaccaccaccaccacctcaaccagaGCTTAGAGGGGGATCTTCTGGATCACATCTCGTCCAGTCTCTCAGTGAGCGGGATGGGGGCTCCGGATTCCTCTATGATTACCACGCACCAGCACCACCTCCAGACCATGGGTCACCTCCACCAGGCTATGGCCATGGGTCATCCGCACTCTCTATCTGTGCACAACGGAATGTCGTGTGTCAACGACGTGGAGTCAGATCCTAGGGAGCTAGAAGCCTTTGCTGAGCGATTCAAACAAAGGAGGATAAAGCTCGGGGTGACCCAGGCGGACGTTGGCTCAGCCCTCGCCAACCTGAAGATACCTGGGGTGGGCTCTCTCAGCCAGAGTACTATCTGCAGGTTTGagtccctcaccctctctcacaaTAATATGATTGCGCTAAAACCTGTCCTCCAAGCCTGGCTCGAGGAGGCCGAGGCTGCTTACCGGGAGAAAAACAGCAAGCCAGATCTTTTTAATGGTAACGAAAGGAAACGAAAACGCACTTCGATAGCCGCACCTGAGAAGCGCTCGTTGGAGGCATATTTTGCGATCCAGCCCCGTCCATCTTCGGAAAAAATTGCTGCAATTGCTGAAAAGCTGGACCTTAAAAAAAACGTGGTTCGTGTGTGGTTTTGCAACCAAAGGCAAAAACAGAAAAGGATGAAATATTCTGCTGTGCATTAGTTAATTAACATTATGCATAAAATACGACATTTTGAAGAGATAACAGGGATCTATCAACATTTCATCATGTCCGACTGGAATTTACAACCGCGACTCTATAGATTTATTTAAATGTTCATTGTGTTGTCTCGTTCACTTTTTTTGTCCTCTAACGGGCACATTTTATGTTGTAGATTGGAATGACACGTGTTGTGCTAAAGGTCTCTTGGATTAAGTTTTCGTTGTTGTTGCTTTTACTTGACTGCATATCACAACTCTCTTCAATCACATAACTATAACAAATAGGCCTATAGAAAATGACCTATCTCTATCATGTGAGATGTCCTGTTGAATGCTCGTAAGTTCGGTTAGTTGTTTGGACAATTTAATCAATTACACCAACATTTCCACGTTTACTGTATGTCTCGGACTGTTTGGATTCATACTTGTATAGGATGGAATTAATGTGTTTTCACTCTATCGgtttaacacccccccccccccccccccttaaaaacatattgcaaattaaTATGCTCTCTTTGTGAACTAGCTGAACTTCGTTGACAAATTAATTCACAGTTGTGTGCAAAAGAGGAAAATCACATTTCACAATATTAACGACACAACACGAGTTGATTTTCTTTAGTCATTTTCAAAATGTCACTATTTTAACTAAGGCACGTCAAACGGGCATGGAAAAGCTGCTATATTTTGACATTACGTATTTTGATGTGAACATGTAAAACAGTTTGGAGTATCACTGAAATATTGTTAGTATTTTTCTTCACTCTTGAATTTTACTTGACAAAATGTGTGAAGTtgaaaatgaatgaataaatcattgaata

Function

NR:

description
POU domain, class 4, transcription factor 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617455.2 True 1964 mRNA 0.46 2 11561936 11564213
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110533343 LOC106603867 coding downstream 87235 11467381 ~ 11474701 (-)
LOC118936915 NA coding downstream 470662 11090021 ~ 11091274 (-)
bod1 LOC106603873 coding downstream 532425 11026087 ~ 11029511 (-)
LOC110533336 LOC106603872 coding downstream 568143 10988789 ~ 10993793 (-)
LOC110533330 LOC106603879 coding downstream 712103 10760682 ~ 10849833 (-)
LOC110533345 LOC106603865 coding upstream 3280 11567493 ~ 11583280 (-)
kctd16b LOC106603861 coding upstream 222982 11787195 ~ 11868573 (-)
LOC110534849 LOC106567493 coding upstream 530121 12094334 ~ 12239835 (-)
trnaa-ugc-40 NA coding upstream 634012 12198225 ~ 12198294 (-)
LOC118966708 NA coding upstream 703507 12267720 ~ 12270434 (-)
G853972 NA non-coding downstream 688 11541197 ~ 11561248 (-)
G853968 NA non-coding downstream 29708 11531192 ~ 11532228 (-)
G853967 NA non-coding downstream 30882 11528866 ~ 11531054 (-)
G853828 NA non-coding downstream 41287 11520450 ~ 11520649 (-)
G853824 NA non-coding downstream 42712 11518933 ~ 11519224 (-)
G854017 NA non-coding upstream 53892 11618105 ~ 11619105 (-)
G854102 NA non-coding upstream 167854 11732067 ~ 11732317 (-)
G854116 NA non-coding upstream 175302 11739515 ~ 11739763 (-)
G854125 NA non-coding upstream 179901 11744114 ~ 11749161 (-)
G854154 NA non-coding upstream 206137 11770350 ~ 11770565 (-)
G853740 NA other downstream 119346 11442252 ~ 11442590 (-)
G853244 NA other downstream 556278 11005109 ~ 11005658 (-)
G852802 NA other downstream 1099286 10462256 ~ 10462650 (-)
G850763 NA other downstream 3129895 8431531 ~ 8432041 (-)
G850323 NA other downstream 3815312 7741302 ~ 7746624 (-)
G854016 LOC106603864 other upstream 51043 11615256 ~ 11620922 (-)
G854402 NA other upstream 220907 11785120 ~ 11785853 (-)
G854734 golga7b other upstream 729890 12294103 ~ 12294536 (-)
G855079 sept8 other upstream 1017180 12581393 ~ 12611178 (-)

Expression

LOC110533344(LOC106603866) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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LOC110533344(LOC106603866) Expression in each Bioproject

Bar chart with 10 bars.
LOC110533344(LOC106603866) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Co-expression Network