LOC118936695 (LOC106603828)


Basic Information

Item Value
gene id LOC118936695
gene name LOC106603828
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 14216996 ~ 14224047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989729.1
tatacagccaatACAGTAGGTGGCGCCATGCATCGATAATACTTGTTTGCGGACTGCGGTAATACACCAGAAGAAGCAGTTGCTGATGATCCAGAGGTCTACGAAGAATAATCGTGTTTTTGCTGGAATGGTTCGTTCAAAAGGTCGGAGTGACGACACCATCACAAGACGGGAAGGAATGCTCAGCAGCAGCTCCAGAAGGCAGAGTGGCGATACGCCTTTGAAGTCAGGTTTCACAAGAGGCAAACTAAAGCGACTCTTCCCTAAACCTCTCTGCGCACGGCCAAAAGGCCATGTTCTGTCACCTATAAATGAGTCAACATGCACTGatcacagATCTGTCTTGTCAACTGCTCCCTGGATGAACAGAATGCTGGAATCAAATGGAACTGAGAGCACAATACATTATAGCGCAGAAGACAGTTCAATTTCACAAGTGGGTGTTTCCTCCCTCCTGTTGGATTGTGATGAGACTGACTCTGCTGACATCTCCAGCGATACTAGCTCCAGCAGTCTGCCCTCACCTGAGCAGTTCCGCAGAGAGAAAgtctatgAAGAGATAGTGGCCTTCCCCAGTGAGGAGATGTTGGACCTGAATGTCAAGAACTCCACTCTCCTAGATGTCAGCCATGCTGAGGACATCCACATGCAGCAGCCTCCTAACCTGTCCTCCATCATTGACATTTCCCAAATGAATGATGGAAAAGATCAGGAAAAAAGCCGTTTAGCGCGACCCATTAAAAGTACATATTCAGACAAGCTGTTCAATGCCTATGTGTCCGTTGAAAGCACCCCCCTAGCTGGAGGAGTAACTGTGCCCTCAGTCCCCAAGAAAACACAAAGGCCAGTGACGATTAGACCCAGGAAGATCAAATGCAGGAAGAGAGTAAAATTTAGTGACTCTGTTACCACTGAGAAGATGGTAGTGAACAATGTGGAGCCTGTCAGTGACCACATGATCAGTGAGAGGACCAGAGACACAGTAGACAACAGAGAAACTGCTGCCCCTGAAGTAGTCCCTCAAGTCCTGAAAAGACCCACACATCACTCACCAGAACTTGCCAAGTTCTTTGACTTTGCagatgagaaagaaagagagacctTCTTTCAAAAGTTGAGGCAGAGGTACTCCTCCATTAGGAGTATATTCGCCAATGTTGGTGGGCTTTCGACAGATACATTTGAAGATGAGGGTAATGTTTGTTCAAAGATATAAGTACCAAGTAGTTAAAGGGCAGAACCATCTGTGCAAAGTGTACCACTTCCAGTCCTCCAGGAAGTAAAGCTACCACAACTTGTAAAAGCTGTCATCAATACAGGACACTTCTGATCCCTAAAGGTTTTCACAGTCCATGGACAGACAGGTTGTtgtggttaaaaaaatatatttaaaaaatgaaattctgttgctgtaatatataatgtagataatgtaaatgttttatttaattaacaTAATAAATTGATAAAATTACA
>XM_036989730.1
tatacagccaatACAGTAGGTGGCGCCATGCATCGATAATACTTGTTTGCGGACTGCGGTAATACACCAGAAGAAGCAGTTGCTGATGATCCAGAGGTCTACGAAGGTCGGAGTGACGACACCATCACAAGACGGGAAGGAATGCTCAGCAGCAGCTCCAGAAGGCAGAGTGGCGATACGCCTTTGAAGTCAGGTTTCACAAGAGGCAAACTAAAGCGACTCTTCCCTAAACCTCTCTGCGCACGGCCAAAAGGCCATGTTCTGTCACCTATAAATGAGTCAACATGCACTGatcacagATCTGTCTTGTCAACTGCTCCCTGGATGAACAGAATGCTGGAATCAAATGGAACTGAGAGCACAATACATTATAGCGCAGAAGACAGTTCAATTTCACAAGTGGGTGTTTCCTCCCTCCTGTTGGATTGTGATGAGACTGACTCTGCTGACATCTCCAGCGATACTAGCTCCAGCAGTCTGCCCTCACCTGAGCAGTTCCGCAGAGAGAAAgtctatgAAGAGATAGTGGCCTTCCCCAGTGAGGAGATGTTGGACCTGAATGTCAAGAACTCCACTCTCCTAGATGTCAGCCATGCTGAGGACATCCACATGCAGCAGCCTCCTAACCTGTCCTCCATCATTGACATTTCCCAAATGAATGATGGAAAAGATCAGGAAAAAAGCCGTTTAGCGCGACCCATTAAAAGTACATATTCAGACAAGCTGTTCAATGCCTATGTGTCCGTTGAAAGCACCCCCCTAGCTGGAGGAGTAACTGTGCCCTCAGTCCCCAAGAAAACACAAAGGCCAGTGACGATTAGACCCAGGAAGATCAAATGCAGGAAGAGAGTAAAATTTAGTGACTCTGTTACCACTGAGAAGATGGTAGTGAACAATGTGGAGCCTGTCAGTGACCACATGATCAGTGAGAGGACCAGAGACACAGTAGACAACAGAGAAACTGCTGCCCCTGAAGTAGTCCCTCAAGTCCTGAAAAGACCCACACATCACTCACCAGAACTTGCCAAGTTCTTTGACTTTGCagatgagaaagaaagagagacctTCTTTCAAAAGTTGAGGCAGAGGTACTCCTCCATTAGGAGTATATTCGCCAATGTTGGTGGGCTTTCGACAGATACATTTGAAGATGAGGGTAATGTTTGTTCAAAGATATAAGTACCAAGTAGTTAAAGGGCAGAACCATCTGTGCAAAGTGTACCACTTCCAGTCCTCCAGGAAGTAAAGCTACCACAACTTGTAAAAGCTGTCATCAATACAGGACACTTCTGATCCCTAAAGGTTTTCACAGTCCATGGACAGACAGGTTGTtgtggttaaaaaaatatatttaaaaaatgaaattctgttgctgtaatatataatgtagataatgtaaatgttttatttaattaacaTAATAAATTGATAAAATTACA
>XM_036989731.1
tatacagccaatACAGTAGGTGGCGCCATGCATCGATAATACTTGTTTGCGGACTGCGGTAATACACCAGAAGAAGCAGTTGCTGATGATCCAGAGGTCTACGAAGAATAATCGTGTTTTTGCTGGAATGGTTCGTTCAAAAGGTCGGAGTGACGACACCATCACAAGACGGGAAGGAATGCTCAGCAGCAGCTCCAGAAGGCAGAGTGGCGATACGCCTTTGAAGTCAGGTTTCACAAGAGGCAAACTAAAGCGACTCTTCCCTAAACCTCTCTGCGCACGGCCAAAAGGCCATGTTCTGTCACCTATAAATGAGTCAACATGCACTGatcacagATCTGTCTTGTCAACTGCTCCCTGGATGAACAGAATGCTGGAATCAAATGGAACTGAGAGCACAATACATTATAGCGCAGAAGACAGTTCAATTTCACAAGTGGGTGTTTCCTCCCTCCTGTTGGATTGTGATGAGACTGACTCTGCTGACATCTCCAGCGATACTAGCTCCAGCAGTCTGCCCTCACCTGAGCAGTTCCGCAGAGAGAAAgtctatgAAGAGATAGTGGCCTTCCCCAGTGAGGAGATGTTGGACCTGAATGTCAAGAACTCCACTCTCCTAGATGTCAGCCATGCTGAGGACATCCACATGCAGCAGCCTCCTAACCTGTCCTCCATCATTGACATTTCCCAAATGAATGATGGAAAAGATCAGGAAAAAAGCCGTTTAGCGCGACCCATTAAAAGTACATATTCAGACAAGCTGTTCAATGCCTATGTGTCCGTTGAAAGCACCCCCCTAGCTGGAGGAGTAACTGTGCCCTCAGTCCCCAAGAAAACACAAAGGAGTATATTCGCCAATGTTGGTGGGCTTTCGACAGATACATTTGAAGATGAGGGTAATGTTTGTTCAAAGATATAAGTACCAAGTAGTTAAAGGGCAGAACCATCTGTGCAAAGTGTACCACTTCCAGTCCTCCAGGAAGTAAAGCTACCACAACTTGTAAAAGCTGTCATCAATACAGGACACTTCTGATCCCTAAAGGTTTTCACAGTCCATGGACAGACAGGTTGTtgtggttaaaaaaatatatttaaaaaatgaaattctgttgctgtaatatataatgtagataatgtaaatgttttatttaattaacaTAATAAATTGATAAAATTACA
>TU976359
gacggctgatgttggtggaatttggaggatgatggaggcaactgggTAGAGATCCTGAGATCCACAAAGTCACTTCCaacaggtggctgatgagatatgttggcacaactgccatattgtaactccatcccaaagcccttgcttggaagtgtactttgccagactgccaagaatcttgtcctcatccaggccaaggtggcgagacacagtagtgatgacaccataggccttgttgagctctgcaccagacaggatgctcttgtcAGCATACTTGgagtccaacatgtacgctgcggtgtgtatgggcttcaggctgaagtcttcacgctttttgatgcatttcagaacggtttcctctgcttggagcaacagtgaagtgggaagagcagtatggatttcttctcttacatctgcaagcagagtctgtacatcagacaggatggcattgtctccctcaatccatgcaatggctactgctataggtttcatgagtttcaggctgctttccACTCTTtcccaaaatacataatccaggaggatcctcttaaTGGGcatgtccatatcggcagactgtgatatggtcATATTCTTGGAgaaactccttcccctccaggagactgtcaaacatgatgacaacatcaccccaacgggtgttgctgggcagcttcaatgtggtgctattattcttctcactttgcttggtgaggtagattgctgctataacttgatgacccttcacatacctaaccatttccttggctctattgtagagtgtatccattgatttcagtgccatgatgtccttgaggagcagattcaatgcatgagcagcacagccaatgggtgtgatttGAGGGTAGGACTcttccactttagaccaagcatcCTTCATGTTCTCatcattgtctgtcaccagtgcaaataccatctgtggtccaaggtcattgatgactgccttcagctcatctgcaatgtagagactggtgtgaCTGTTGTCCATTGTCTGTGCTCTTATAGAATaatggttgaggggtggagatgtagttaattattccttgcccactaacattcaaccacccatcagagatgattgcaatagtctgctttctctatgatttgcttgaccttcacctgaactctgttgaactctgcatccaacaaatgagtagataaagcatgtttGGTTGAAGGGGGTATTCTGGGCAAAgtacattcagaaatctcttccaatacacattgcctgtgagcatcagaggtgaaccagttgcatacacggctcaagcaagacattcatcagcatttctctgactctgttcctccattgagtcaaaaaaacttctgattccaggaggaccatgagctgttgctatcgataaggtgtctgattcatcattttcacctcaaatagaagagggacttttgtcagaggttgcttgttgtgagagctgagggaactttatgcacttggctagatgattctgcatctttgttgcattcttcacatatgatttggcacagtatttgcaaatgtacacagcttttccttctacattagccgTAGTGAAATGTcttcacacatcagatagtgcctgtggcattttcctgtaaagattagaaaaaatgtgtaaaataaaaataaatacaattccatgtacagataaatagttaagcagttagattaaacaactcctttgtaagaaatgttttaaaatgcaacgtatggaaacaggtgaattaacactcctccgttagcaggctcaagcaagctaaaacccacatggtagcaaaaactaactagcagaaattgttaaacaagttagaaattatttaaacactgtaggctactatttactagttaacaaaaaatcatgtatgtcatataaaatatattcaccccagccagtattgtaatcaaaaccagaaagcatgtagttcttggctcagacagtgtagtagtgtgagctcaatagcatctcattagtgtgcaagatcttgagaatcagctgtacatgtgatggaagaatgcactgtgaatgcagagggttgcaattctattgaattggggatagtttaaccaaaatatgccacaagacgtagaattgccttgtgtatcccactAAAAAGGTTCACTTGTTATTAGCTAACTTTTTTTGaagaatttaagcaaaattcccgggcttaacttcccatgggaAATTTCTGACAGCCCTTTGCAGACCTAGTCATTACCCATGCCTCTCCTCTCGAGACCTTTCATTGCGTCCTCTCAAGTGTTTCCATaggtagggccaggagtttttcctgaccaatGTGACCGGACCTGGGATGTATTCATTTAGCTAATTCTGTGACAAAacctttcttaaatggaagcaaactgaACAAAACGGGGAGGGACCTCCTTGAATAGAAACTCTCGCTTTGCTCCTGTGTGGCTAAGTTGGTATGGTGGGACCAGTACAGTAAAATGTTAATATAAAAtgctctgtttgcttccgttttcAAACAGTATACAGTTTCTGTAGGTAATCCGCCCCAGGAAAAGCTATTGGCTCTAGTTAGTAGCTGTAAATTGGGCTCGAGTTTTTTCCTACTCGGGAGAAATCCCTGCTGCCCTATCCATTAAATATTATACGGTTTTGTTTTTATGATTTATAGTAATGGTTGAGTTTGATTGATCTGCTGTTACTTTTTTTCATTTATATtgttattgaatattgtgctttaTTCACTCTGCAGTTCAAAGATATAAGTACCAAGTAGTTAAAGGGCAGAACCATCTGTGCAAAGTGTACCACTTCCAGTCCTCCAGGAAGTAAAGCTACCACAACTTGTAAAAGCTGTCATCAATACAGGACACTTCTGATCCCTAAAGGTTTTCACAGTCCATGGACAGACAGGTTGTtgtggttaaaaaaatatatttaaaaaatgaaattctgttgctgtaatatataatgtagataatgtaaatgttttatttaattaacaTAATAAATTGATAAAATTAC

Function

NR:

description
uncharacterized protein LOC110494259

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989729.1 False 1476 mRNA 0.44 14 14216996 14224047
XM_036989730.1 False 1439 mRNA 0.44 14 14216996 14224047
XM_036989731.1 False 1179 mRNA 0.44 13 14216996 14224047
TU976359 True 3011 lncRNA 0.41 3 14220906 14224046
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Neighbor

gene id symbol gene type direction distance location
LOC110533375 LOC106603829 coding upstream 6569 14115152 ~ 14210427 (+)
LOC110533374 LOC106603831 coding upstream 117899 14092953 ~ 14099097 (+)
slc22a5 LOC106603832 coding upstream 139710 14068413 ~ 14077286 (+)
LOC110533371 LOC106603835 coding upstream 163807 14042692 ~ 14053189 (+)
LOC110533370 pdli4 coding upstream 246867 13925802 ~ 13970129 (+)
LOC110533378 LOC106603820 coding downstream 156 14224203 ~ 14275198 (+)
LOC110533377 LOC106603825 coding downstream 55450 14279497 ~ 14430286 (+)
tcf7 skp1 coding downstream 842843 15066890 ~ 15138685 (+)
ube2b ube2b coding downstream 947267 15171314 ~ 15185905 (+)
LOC110534855 LOC106603811 coding downstream 984129 15208176 ~ 15482337 (+)
G856654 irf1-2 non-coding upstream 66851 14148165 ~ 14150145 (+)
G856659 NA non-coding upstream 103141 14113572 ~ 14113855 (+)
G856689 NA non-coding upstream 125644 14090970 ~ 14091352 (+)
G856686 NA non-coding upstream 132940 14083791 ~ 14084056 (+)
G856663 NA non-coding upstream 179497 14037290 ~ 14037499 (+)
G857123 NA non-coding downstream 237444 14461491 ~ 14461779 (+)
G857148 NA non-coding downstream 255093 14479140 ~ 14479580 (+)
G857156 NA non-coding downstream 260855 14484902 ~ 14485175 (+)
G857168 NA non-coding downstream 274420 14498467 ~ 14498690 (+)
G857169 NA non-coding downstream 274737 14498784 ~ 14499043 (+)
G856353 NA other upstream 442414 13773887 ~ 13774582 (+)
G855498 NA other upstream 1195964 13016534 ~ 13021032 (+)
G855483 LOC106603848 other upstream 1227154 12985031 ~ 12989842 (+)
zcchc10 zcchc10 other upstream 1720741 12485809 ~ 12497278 (+)
G853577 NA other upstream 2900656 11315950 ~ 11316340 (+)
G858148 NA other downstream 1190393 15414440 ~ 15434748 (+)
G858203 NA other downstream 1302342 15526389 ~ 15526807 (+)
G858416 NA other downstream 1649982 15874029 ~ 15878692 (+)
G860453 NA other downstream 2877868 17101915 ~ 17102467 (+)

Expression

LOC118936695(LOC106603828) Expression in all Baseline Samples

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LOC118936695(LOC106603828) Expression in each Bioproject

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LOC118936695(LOC106603828) Expression in each Sample
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Co-expression Network