LOC110533383 (skp1)


Basic Information

Item Value
gene id LOC110533383
gene name skp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15129962 ~ 15139654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989742.1
GAGTTAGCTAGCCGCGTTAGCTTCGTTTCCTGGCTGTCGTTCGCAGTAACAGCTAGTTACTGTTACCAAAAAGTATTATTGTTAAATGTTACGCGTAACGCTAGCTAGCGTTGAGTCTATCTTATTTCAGCATTGGACCGCTTCAGACTCCCTTTTTTGTTGACAGTTGCCCAGACAGTAACGTTAGCTGGAATCGAGATGCCAACAATTAAACTGCAAAGTTCAGATGGAGAGATCTTTGAGGTGGATGTGGAAATAGCAAAGCAGTCTGTGACAATAAAGACAATGCTGGAAGATTTGGGTATGGATGATGAAGGAGATGATGATCCAGTCCCCCTCCCGAATGTGAATGCGGCTATCCTCAAGAAGGTGATCCAGTGGTGCACCCACCACAAAGATGATCCCCCTCCCCCCGAGGATGACGAGAACAAGGAGAAAAGGACGGATGACATACCCGTCTGGGACCAGGAGTTCCTCAAAGTGGACCAAGGGACCCTCTTCGAACTTATTCTAGCTGCAAACTATTTAGACATCAAAGGACTGCTAGATGTCACCTGCAAGACGGTGGCCAACATGATCAAAGGAAAGACCCCAGAGGAGATCAGGAAGACGTTCAACATCAAAAATGACTTCACAGAGGAAGAGGAAGCCCAGGTACGCAAGGAGAACCAGTGGTGTGAAGAGAAATAGAGGAGTTGTCttccaacactaacacactgaaaGGATTGTTCCAGTAGTTGGTTGCACTGCATTGTTCATACTTGTTAATATTACATTTAGTCTATTAGAGTGACAGACCTCCCCCCCGTGTACTCATAGCATGACCATTTCCATTGCTTGTATGGTGCGAAATAATAAATGTCATGTTTTTACACATTTTACTTCACTTCATATTCACGAGTCTGGGTTCTGGGTTTTCTTTCCATTTTCTAGAGTAGCTGCACCGCTCTCCCCGTTTTCAATTGCTATAGTATTTTTTTAATGAACATGTttacatcttttttttttgttgagtcaACTGAAATGATGGCTCAATACTGAATTTTGTAATCGCAGCCTCTTCTGTGCCGTTGTTTTAGCGTCATCTTAGGGAGACGAGCGTTAATAGGACATTTGAAGTGGGGGTAAATGTGTGAAATGTCCTGTGGATTGGAAATACTTGTTGAAGTGTGTGTGCTGTCTTTCACACAACTTATGGTATTTACCTATTTGGATTGGAATCTTTAATCAGTTCTGCTCTGAAAATGACATTTAGGATTACTATTCAATTCCAGGAGTAAGTAAATTAATTAAAAGAATGTCTGTC
>XM_021617521.2
GGCATATCACAAGACTACTCATTCGCTTCCCCACATTTGACAAAGCGAAAGCTTAGCTGGCTGGCCATCTAATATAGGTCCACTGGCTGCCTGTGCTTCGGTTTGGCCCTGTTGACGTTTAAAAAATAATTATCTGAATTTGCTTTAAAACGTTCATAATGCCAACAATTAAACTGCAAAGTTCAGATGGAGAGATCTTTGAGGTGGATGTGGAAATAGCAAAGCAGTCTGTGACAATAAAGACAATGCTGGAAGATTTGGGTATGGATGATGAAGGAGATGATGATCCAGTCCCCCTCCCGAATGTGAATGCGGCTATCCTCAAGAAGGTGATCCAGTGGTGCACCCACCACAAAGATGATCCCCCTCCCCCCGAGGATGACGAGAACAAGGAGAAAAGGACGGATGACATACCCGTCTGGGACCAGGAGTTCCTCAAAGTGGACCAAGGGACCCTCTTCGAACTTATTCTAGCTGCAAACTATTTAGACATCAAAGGACTGCTAGATGTCACCTGCAAGACGGTGGCCAACATGATCAAAGGAAAGACCCCAGAGGAGATCAGGAAGACGTTCAACATCAAAAATGACTTCACAGAGGAAGAGGAAGCCCAGGTACGCAAGGAGAACCAGTGGTGTGAAGAGAAATAGAGGAGTTGTCttccaacactaacacactgaaaGGATTGTTCCAGTAGTTGGTTGCACTGCATTGTTCATACTTGTTAATATTACATTTAGTCTATTAGAGTGACAGACCTCCCCCCCGTGTACTCATAGCATGACCATTTCCATTGCTTGTATGGTGCGAAATAATAAATGTCATGTTTTTACACATTTTACTTCACTTCATATTCACGAGTCTGGGTTCTGGGTTTTCTTTCCATTTTCTAGAGTAGCTGCACCGCTCTCCCCGTTTTCAATTGCTATAGTATTTTTTTAATGAACATGTttacatcttttttttttgttgagtcaACTGAAATGATGGCTCAATACTGAATTTTGTAATCGCAGCCTCTTCTGTGCCGTTGTTTTAGCGTCATCTTAGGGAGACGAGCGTTAATAGGACATTTGAAGTGGGGGTAAATGTGTGAAATGTCCTGTGGATTGGAAATACTTGTTGAAGTGTGTGTGCTGTCTTTCACACAACTTATGGTATTTACCTATTTGGATTGGAATCTTTAATCAGTTCTGCTCTGAAAATGACATTTAGGATTACTATTCAATTCCAGGAGTAAGTAAATTAATTAAAAGAATGTCTGTC

Function

symbol description
skp1 Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within phosphorylation and ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SKP1 (S-phase kinase associated protein 1).

NR:

description
PREDICTED: S-phase kinase-associated protein 1 isoform X1

GO:

id name namespace
GO:0035518 histone H2A monoubiquitination biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0051437 obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016032 viral process biological_process
GO:0031519 PcG protein complex cellular_component
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031467 Cul7-RING ubiquitin ligase complex cellular_component
GO:0004806 triglyceride lipase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03094 SKP1, CBF3D; S-phase kinase-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989742.1 False 1306 mRNA 0.42 6 15129962 15139356
XM_021617521.2 True 1266 mRNA 0.42 6 15129962 15139654

Neighbor

gene id symbol gene type direction distance location
LOC110533382 LOC106603817 coding downstream 112877 15000151 ~ 15017085 (-)
LOC110533381 LOC106603818 coding downstream 133869 14980348 ~ 14996093 (-)
LOC110533380 LOC106603823 coding downstream 335712 14557109 ~ 14794250 (-)
LOC110533376 irf1-2 coding downstream 977313 14148151 ~ 14152649 (-)
slc22a21 LOC106603834 coding downstream 1064288 14056934 ~ 14065674 (-)
LOC110533384 LOC106603816 coding upstream 1158 15140812 ~ 15154273 (-)
LOC110534908 LOC106603812 coding upstream 18021 15157675 ~ 15171195 (-)
LOC110533385 LOC106603813 coding upstream 47740 15187394 ~ 15188882 (-)
sar1a sar1a coding upstream 351349 15491003 ~ 15499136 (-)
LOC110534856 LOC106603798 coding upstream 878884 16018538 ~ 16057861 (-)
G857984 NA non-coding downstream 57819 15071684 ~ 15072143 (-)
G857951 NA non-coding downstream 104397 15025362 ~ 15025565 (-)
G857941 NA non-coding downstream 131779 14997974 ~ 14998183 (-)
G857925 NA non-coding downstream 149838 14979032 ~ 14980124 (-)
G857757 NA non-coding downstream 192325 14937427 ~ 14937637 (-)
G858038 NA non-coding upstream 42986 15182640 ~ 15183113 (-)
G858049 NA non-coding upstream 59440 15199094 ~ 15199293 (-)
G858053 NA non-coding upstream 62506 15202160 ~ 15202475 (-)
G858580 NA non-coding upstream 126708 15266362 ~ 15280892 (-)
G858581 NA non-coding upstream 130211 15269865 ~ 15274100 (-)
G858015 NA other downstream 11933 15117422 ~ 15118029 (-)
G856863 LOC106603829 other downstream 919580 14203533 ~ 14210382 (-)
G856872 NA other downstream 922746 14205272 ~ 14207216 (-)
G856922 NA other downstream 944988 14184287 ~ 14184974 (-)
LOC110533421 LOC106603793 other upstream 1001630 16141284 ~ 16185730 (-)
G859594 NA other upstream 1316894 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 2382607 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 3261841 18401495 ~ 18405409 (-)

Expression


Co-expression Network