LOC110533384 (LOC106603816)


Basic Information

Item Value
gene id LOC110533384
gene name LOC106603816
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15140812 ~ 15154273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617523.2
TCCCTGGCGCTCCCAGTCCGACTTGTGTTGAGTGGATCACGGTCTAGGGTGGGATAACAGCTACTGACGTCTCCATATATCTTAGTCGATCCGGTTCATGTACGTTCGTCAATGTATGTGTCAATTAGAACTGCATGCAACTTGGTTGGTCAATTTGGGGGAGGATTGCGAGTATTTAGGAAAATAACAATTTCCGTGCCATTGAATTAACCAAAATAACAATCAGGAATGGACGAGAAGTGTTTTACGAAGGAAATCGATTTATGGATCGAACAAATCAACGACTGCAAACAGCTGTCAGAGAGCCAAGTAAAAACGCTTTGCGAAAAGGCGAAGGAAATTTTGACCAAGGAATCCAACGTGCAGGAGGTCCGATGTCCTGTTACAGTGTGTGGAGACGTCCACGGCCAGTTCCACGACCTCATGGAGCTCTTCAGAATCGGAGGAAAGTCTCCAGACACAAACTACCTGTTCATGGGAGACTACGTTGACCGAGGCTACTACTCTGTAGAAACTGTCACACTACTTGTAGCACTTAAGGTTAGGTACCGTGAACGCATCACAATCCTTCGGGGGAACCACGAAAGCAGACAAATCACACAGGTGTACGGCTTCTATGACGAGTGCTTAAGGAAATACGGCAATGCAAACGTATGGAAATACTTCACAGACCTCTTCGATTACCTTCCTCTCACGGCCTTGGTAGATACTCAGATATTCTGTCTTCATGGAGGCCTGTCTCCGTCCATAGACACGTTGGATCACATCCGAGCGCTGGACCGTTTGCAGGAAGTGCCACACGAGGGCCCCATGTGTGACCTGCTGTGGTCAGACCCAGATGACCGTGGGGGCTGGGGAATCTCCCCCAGGGGGGCCGGCTACACCTTTGGCCAGGATATATCCGAGACATTTAACCATGCCAACCGCCTTACCCTGGTCTCCAGAGCTCACCAGCTGGTTATGGAGGGTTACAACTGGTGCCATGAGCGAAACGTGGTAACTATATTCAGTGCACCAAATTACTGTTACCGTTGTGGTAACCAGGCATCTATCATGGAACTCGACGACACCCTGAAATACTCCTTCCTGCAGTTTGACCCTGCGCCTCGTAGAGGGGAACCCCATGTCACCCGTCGCACCCCGGACTACTTCTTGTAAAACCTCACCACTTGTACAGGATTGCCATGATTTCTGAAAGTACCTTCAGCATCCAAAACCATGGGAGAGGGGGCCAGGGTCGGGCGACACAGCAAAACATCAATGTACATAATTGTATTCACATCACTATTTAAGCATTCACAAAACATCTGTACATGGACCAAAAAGTGTTACAAAATTCTCCAAGGACTCCAATTCCTTACTCCTCTAGCTCTACTCCCCTGTTTCCATTCTCAAGGTTAGCACAGCAACCAAGTTTTGTTAATTGAAACATTTTCAATCCAATGCACCAATGCTGATTTTGTGAATCTGCACCTTTTTTTttcagtatatttaaaaaaaaaacctgtttgcactttaaaaaaaaatgtttattgtcCAATGGAGATGTTATCTCTCAAATCACCAGGCAGGTCAAAACTCCATCCcgccaaaacaggctgaaattttaGGCGGCCTTTTCTAATGGCGTTTACActaaaaagggcattatcatttattataacctcatagtgtggaaatgtatataaagcacaggaaaatcacatttgaCCGGACTGGGCCTATGTGTTTTTGCAAGTCAGAAGATGGCTGTTAAACTCTAcggagagttttttttttttttttgtcttaaaaaataaatatttagtcACCAGGTTTTTGCTGGGTTAAACAGATGCCcttccaagtgtgtgtgtgtgtgtgtgtggcagacagATCAAGAAATTCCATTGGAAACAGTCACACACTAAATCATAATCATGAGGAGTGAGTTTGTATTGAGGGATCCTGTTGAATAAAGAATTAAGTTGTTCCTTGA
>XM_021617524.2
TCCCTGGCGCTCCCAGTCCGACTTGTGTTGAGTGGATCACGGTCTAGGGTGGGATAACAGCTACTGACGTCTCCATATATCTTAGTCGATCCGGTTCATGTACGTTCGTCAATGTATGTGTCAATTAGAACTGCATGCAACTTGGTTGGTCAATTTGGGGGAGGATTGCGAGTATTTAGGAAAATAACAATTTCCGTGCCATTGAATTAACCAAAATAACAATCAGGAATGGACGAGAAGTGTTTTACGAAGGAAATCGATTTATGGATCGAACAAATCAACGACTGCAAACAGCTGTCAGAGAGCCAAGTAAAAACGCTTTGCGAAAAGGCGAAGGAAATTTTGACCAAGGAATCCAACGTGCAGGAGGTCCGATGTCCTGTTACAGTGTGTGGAGACGTCCACGGCCAGTTCCACGACCTCATGGAGCTCTTCAGAATCGGAGGAAAGTCTCCAGACACAAACTACCTGTTCATGGGAGACTACGTTGACCGAGGCTACTACTCTGTAGAAACTGTCACACTACTTGTAGCACTTAAGGTTAGGTACCGTGAACGCATCACAATCCTTCGGGGGAACCACGAAAGCAGACAAATCACACAGGTGTACGGCTTCTATGACGAGTGCTTAAGGAAATACGGCAATGCAAACGTATGGAAATACTTCACAGACCTCTTCGATTACCTTCCTCTCACGGCCTTGGTAGATACTCAGATATTCTGTCTTCATGGAGGCCTGTCTCCGTCCATAGACACGTTGGATCACATCCGAGCGCTGGACCGTTTGCAGGAAGTGCCACACGAGGGCCCCATGTGTGACCTGCTGTGGTCAGACCCAGATGACCGTGGGGGCTGGGGAATCTCCCCCAGGGGGGCCGGCTACACCTTTGGCCAGGATATATCCGAGACATTTAACCATGCCAACCGCCTTACCCTGGTCTCCAGAGCTCACCAGCTGGTTATGGAGGGTTACAACTGGTGCCATGAGCGAAACGTGCCTGCAGTTTGACCCTGCGCCTCGTAGAGGGGAACCCCATGTCACCCGTCGCACCCCGGACTACTTCTTGTAAAACCTCACCACTTGTACAGGATTGCCATGATTTCTGAAAGTACCTTCAGCATCCAAAACCATGGGAGAGGGGGCCAGGGTCGGGCGACACAGCAAAACATCAATGTACATAATTGTATTCACATCACTATTTAAGCATTCACAAAACATCTGTACATGGACCAAAAAGTGTTACAAAATTCTCCAAGGACTCCAATTCCTTACTCCTCTAGCTCTACTCCCCTGTTTCCATTCTCAAGGTTAGCACAGCAACCAAGTTTTGTTAATTGAAACATTTTCAATCCAATGCACCAATGCTGATTTTGTGAATCTGCACCTTTTTTTttcagtatatttaaaaaaaaaacctgtttgcactttaaaaaaaaatgtttattgtcCAATGGAGATGTTATCTCTCAAATCACCAGGCAGGTCAAAACTCCATCCcgccaaaacaggctgaaattttaGGCGGCCTTTTCTAATGGCGTTTACActaaaaagggcattatcatttattataacctcatagtgtggaaatgtatataaagcacaggaaaatcacatttgaCCGGACTGGGCCTATGTGTTTTTGCAAGTCAGAAGATGGCTGTTAAACTCTAcggagagttttttttttttttttgtcttaaaaaataaatatttagtcACCAGGTTTTTGCTGGGTTAAACAGATGCCcttccaagtgtgtgtgtgtgtgtgtgtggcagacagATCAAGAAATTCCATTGGAAACAGTCACACACTAAATCATAATCATGAGGAGTGAGTTTGTATTGAGGGATCCTGTTGAATAAAGAATTAAGTTGTTCCTTGA

Function

NR:

description
serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like isoform X2

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617523.2 False 1978 mRNA 0.45 7 15140812 15154273
XM_021617524.2 True 1889 mRNA 0.45 7 15140812 15154273

Neighbor

gene id symbol gene type direction distance location
LOC110533383 skp1 coding downstream 1158 15129962 ~ 15139654 (-)
LOC110533382 LOC106603817 coding downstream 123727 15000151 ~ 15017085 (-)
LOC110533381 LOC106603818 coding downstream 144719 14980348 ~ 14996093 (-)
LOC110533380 LOC106603823 coding downstream 346562 14557109 ~ 14794250 (-)
LOC110533376 irf1-2 coding downstream 988163 14148151 ~ 14152649 (-)
LOC110534908 LOC106603812 coding upstream 3402 15157675 ~ 15171195 (-)
LOC110533385 LOC106603813 coding upstream 33121 15187394 ~ 15188882 (-)
sar1a sar1a coding upstream 336730 15491003 ~ 15499136 (-)
LOC110534856 LOC106603798 coding upstream 864265 16018538 ~ 16057861 (-)
LOC110533417 snrpd2 coding upstream 910978 16065251 ~ 16068108 (-)
G857984 NA non-coding downstream 68669 15071684 ~ 15072143 (-)
G857951 NA non-coding downstream 115247 15025362 ~ 15025565 (-)
G857941 NA non-coding downstream 142629 14997974 ~ 14998183 (-)
G857925 NA non-coding downstream 160688 14979032 ~ 14980124 (-)
G857757 NA non-coding downstream 203175 14937427 ~ 14937637 (-)
G858038 NA non-coding upstream 28367 15182640 ~ 15183113 (-)
G858049 NA non-coding upstream 44821 15199094 ~ 15199293 (-)
G858053 NA non-coding upstream 47887 15202160 ~ 15202475 (-)
G858580 NA non-coding upstream 112089 15266362 ~ 15280892 (-)
G858581 NA non-coding upstream 115592 15269865 ~ 15274100 (-)
G858015 NA other downstream 22783 15117422 ~ 15118029 (-)
G856863 LOC106603829 other downstream 930430 14203533 ~ 14210382 (-)
G856872 NA other downstream 933596 14205272 ~ 14207216 (-)
G856922 NA other downstream 955838 14184287 ~ 14184974 (-)
LOC110533421 LOC106603793 other upstream 987011 16141284 ~ 16185730 (-)
G859594 NA other upstream 1302275 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 2367988 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 3247222 18401495 ~ 18405409 (-)

Expression


Co-expression Network