LOC110534908 (LOC106603812)


Basic Information

Item Value
gene id LOC110534908
gene name LOC106603812
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15157675 ~ 15171195 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989743.1
ACATGCAATTTACACGACACCTATACTTGGTTAGTATTCAAAGTGTCGTCTATCATACATCACATAAACggttgtttgtttttatttaacaagCTAACACTTTCCTCAAGAAATAATGGTTTAATCCCAACTTCATCACTTCATCAGTCACTCGACCAGTTGCAACATGGATACCTGTGCAAAGAATACATATGCTGATGTAGTCTCTGAAGCATTATTTACATTTCATCAAGTCATGTGTAGCAAAGAAACCATATATCAAGTTGACCATGTGTCCATGGTTATGGTCATTTCTTGGTGTAAAGACTAGTTTACATGTAGGCTCAAACCTAATTATTCACTTGGTTAATTCCCCTGTATCCATGTAGAATGTTCTAGAACGCCTCTCAATTGTTATCAACTTtgcctgttgttatggtgaccacaTTCTAATTTCACACCTTTTTGTTTGTGACAGAATTATTCTGGGGTGGAATAATTCTGGGAAGAAAACCTGAAGTGTGTTTTTCAAACATGAAGTGGTCTGTCAGTTAGAGGCATCGTTTATTTCAAACATGAAATTGTGTAATGTATGAGAGCAGTAAAGCCAGGAGAAAAAAATACATGAACATAATCTTTGTATCTACCCAGCAGTAAGTATTTTGACCACATTGTGTTTTGTGTAATCACGTTGTAGGCTATATGACCCTGTTTTCACTGGTCATTTGAAAGTATTACACTAGATGTTGTATGTATTTTGTATGCCTTTATATCTGTTTATGCTTTGAAATGAATATGAATACATTTATCCATGTGTGCTCAAGGACAGCCCACTGAAGGAAGATGGATATGTATGAGAACCTTGGCGTCGTGGGTGAGGGGAGCTATGGTACAGTGATGAAGTGTCGACACAAGGAGATTGGACACATTGTGGCCATCAAGAGGTTCAATGACAAGGAAGAGGACAAAACCATGAAAAAGGTTATCATGAGAGAAATCAAACTTCTGAGGAAATTTCGCCATGAAAACCTTGTGAACATGCTGGAGGTATTCCGGTTCAAGAAGCGCTTGTATGTTGTCTTTGAGTACATTGACCGCACAGTTCTGGAAGACCTAGAGAGATATCCTCATGGTTTGGACAGCAAGCGCCTCAGAAAGTACATGTTCCAAATTCTACGAGCCATGGATTACCTTCACACCAGCAATATCATTCACAGAGATGTCAAACCTGAGAATGTTCTTGTCTCTAACTCTGGGGTGGTAAAGCTCTGTGACTTTGGGTTTGCCAGAGCCTTGGCACCGACTGGGGAGCCTCTCACAGACTATGTGGCCACGAGGTGGTACAGAGCCCCAGAACTTTTAGTGGCAGACAACACTTACAGCAAACCTGTAGATGTGTGGGCCATTGGCTGCTTGATTATAGAGATGGCTACAAGCAATGCTTTTCTGACGGGGACTTCTGACCTGGACCAGGTGCACAAAATAGTCAGCAAAGTGGGGCCTTTGACCCGTCATCAGCAAGACCTGTACTTCCAGAACCCCATCTTTGCTGTGGCCAGCCTTCCTGAGGTGCAGCTCCTCAGGGACCCCAGGAGGAAGTACCACAAACTCCACTTCTTAGTGGCTGAAATAGTGGATTCATGCCTACAGATTGATCCATCTCACAGGGCTGCGTGCTCCATGTTGCTCGTTCATCGGTACTTCACCAAAGACGGGTTCGTTGAAAGATTCATACCAGAGATACAGGCATTGATACAGAAAGATGCCAAGGTTAACAGCATGCACTGGATTCATAGTAGCTCATGGGAGCCACCAGAGGACCAAGGAACAGGAGTCTTGTCCTCATCCTCATGTAACAGAAAGCCAGTGAAGGACACTGAGAAGGACCGACGTGGGAAGGAGCCTGAGCAGAAGCATTCTAGGGCAGGCAGGAGGTCAGAGATCAGGATGACCTGCAGCCCTGTCTCATCTCAGACAAACAGACAGCCctttacctccacctctacctccatcccaGACCCCCCTCAATCTCAGGACAAGGCTGTAGCCTTTACCATGCCCCGCATCAACGCCAGCAACAATCTTTTTGCTGCTGTCCCCGTTCCATGCTGTATGGAAGTCACCAAATCCCGcACTGATAAGATAAAGAGACGGCCGAGCCCTACTGACCTGGCCATGGGGAATAGTCAGCTGACTGATGCCCTGTCTCAGAGTGACAGCCATAATAACCTCCAGGTTGAGATGTCCAGTCTGGCTAAAAAGAAGGTGAAGTCAGTGAGAGACGTGAGAGATGTGCGCTTCCCTGGACTTCCTGTGTTCGGCCACCAGATGGAGCTGAAGTTTACAGATGCAAAGCACTCGAGGAAGGAGCTGAAGagcagaggaagagaagaagactCCAGAATACCATCATTGCCGTCATCCGATTTCACTGACCACGGAAATAAGTAGGATTTGGAGGGAACAGTACTACCATTGAGAGTTGATCTGAATTCTTAACTGGGTCCTGGCACAGGATTGACTGaagataataaaaataataacaataaatgtTTTAGACACACTTGGTTTTTGTGATAACAGAGCATCTTTAACTTCAACAGTTagaataatgtatttttttgttccACTTTTCAGTACTTTATCCACTGTGCCCCACCAACCATTCAAAAAGAAAGATATTGAAATTAAAGATACCCCCCCAGACTGTTGTTGAGATTCAGTTGGCACATCCGCATTTGCACTGAGTTGCCATCTTACAGCAACAGCAAAAGTCAGTGGCTGCATTTCAAACTCATAAAAGACACACACCCTTGTCCACTTACCCTCGCCCTATGCCTTTGGGGAAATCTCCGCGGCCATAGTTGTCATCGGTCCAGATGATAGGCtaagcaagggaagtttgcaatGTATCCCCCTTAGCCCTCGTTTTTAATAgagtttgcgagtgtacaattatgttcacttcgGGGCCTGAAACGCCCCATAATTAGATTTGTGAAGATTGTACATCCGCTAATAAAAGTCAGACCAAAACATAAAACCTCAACGTCAttatacaagtgtaagtaaaaccgaatgtaaataagttagaaattgtgctactaatgcacaaacACGTTTCATAaagtaattatgtttttgtttggttagctttcGGAAATGTTCCTTCTTCAGAAGT

Function

NR:

description
cyclin-dependent kinase-like 3

GO: NA

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989743.1 True 3160 mRNA 0.43 12 15157675 15171195

Neighbor

gene id symbol gene type direction distance location
LOC110533384 LOC106603816 coding downstream 3402 15140812 ~ 15154273 (-)
LOC110533383 skp1 coding downstream 18021 15129962 ~ 15139654 (-)
LOC110533382 LOC106603817 coding downstream 140590 15000151 ~ 15017085 (-)
LOC110533381 LOC106603818 coding downstream 161582 14980348 ~ 14996093 (-)
LOC110533380 LOC106603823 coding downstream 363425 14557109 ~ 14794250 (-)
LOC110533385 LOC106603813 coding upstream 16199 15187394 ~ 15188882 (-)
sar1a sar1a coding upstream 319808 15491003 ~ 15499136 (-)
LOC110534856 LOC106603798 coding upstream 847343 16018538 ~ 16057861 (-)
LOC110533417 snrpd2 coding upstream 894056 16065251 ~ 16068108 (-)
LOC110533418 LOC106603795 coding upstream 908435 16079630 ~ 16088437 (-)
G857984 NA non-coding downstream 85532 15071684 ~ 15072143 (-)
G857951 NA non-coding downstream 132110 15025362 ~ 15025565 (-)
G857941 NA non-coding downstream 159492 14997974 ~ 14998183 (-)
G857925 NA non-coding downstream 177551 14979032 ~ 14980124 (-)
G857757 NA non-coding downstream 220038 14937427 ~ 14937637 (-)
G858038 NA non-coding upstream 11445 15182640 ~ 15183113 (-)
G858049 NA non-coding upstream 27899 15199094 ~ 15199293 (-)
G858053 NA non-coding upstream 30965 15202160 ~ 15202475 (-)
G858580 NA non-coding upstream 95167 15266362 ~ 15280892 (-)
G858581 NA non-coding upstream 98670 15269865 ~ 15274100 (-)
G858015 NA other downstream 39646 15117422 ~ 15118029 (-)
G856863 LOC106603829 other downstream 947293 14203533 ~ 14210382 (-)
G856872 NA other downstream 950459 14205272 ~ 14207216 (-)
G856922 NA other downstream 972701 14184287 ~ 14184974 (-)
LOC110533421 LOC106603793 other upstream 970089 16141284 ~ 16185730 (-)
G859594 NA other upstream 1285353 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 2351066 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 3230300 18401495 ~ 18405409 (-)

Expression


Co-expression Network