LOC110533385 (LOC106603813)


Basic Information

Item Value
gene id LOC110533385
gene name LOC106603813
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15187394 ~ 15188882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617525.2
CCATGCAGGTACAGTGGCTCCCATATGACAGATACGGTGAGTCTAAAGGAGCAGACAACAAAAATATACAAGGGCTACATAGCGAACATAACAAATACAACTGTTTATTATGGATTCTCATGACAATTAAGTTGGCATACACTACGCAGTGTATGTGAATTGACGCTTTTTACTCTCGCACGCAAGTTTTGACATGGTTTCGGCTTAACAGtgaagaaggtggactttgtaacATTTATTGCGCAAGTAATAAATTGAACTACTCAAACGAATAAAAAATCTAAGAAGCTAGATATCATTGTGAAGGCAGCAAAATGCTTTCTGGATCTCCAGGACAGGCGAAATTGTTACAGGGAATACTGAATGAAGAGGCCACCCCTCCCAGGTTCCTGAGCCCGTGTAGGGATCTGAATATACCTTTTAATCCGACTGAAGGAGTAAAGTTTTTGTTTACTTTAGACATTTAGAAGTATCTTTTTTCACCTTTCCCTTATCCCTGTTATTTTGAGTAAACGTTTATCAGTTTTCACCCCATCCAGTAGATGGCAGACCGCCAGAATACCATAGAAGGAAAAGCTTCCTGCCTTCGGTTCTGCTTCTGCGTACAATCATTTTTGTGTTAGGAAGTCTTGTGTACTTGTCGAAATGGCCGAGGGTGATATCGAGGAATTCATTGAACAAAACAGGCATTTGTCCGAGCTTGTAGATACATATCGTGGTATCTCCGAAAGTGAAAAACATTGGAAGGCCAGGAGGGCCTTCCTATTCAGAAATATAAACGACTTTGAGGACCCACACATTGATCAGCTGCTTGCTTTGTCCATGGTATGGGCCAACAACGTGTTTCTTGGCTGTCGATACAGTCCAGACCTCTTGGAGAAAGTGAATGAAATGGCCGAAGGAATTGTTGTGGAGGATGCCCCTGTTTTCAAAACCAGAGATGAGATCATGAAAAATCAGAAacgatgaatggatggatgaccTGCTCCGTTATGGATGGATTACGTTACTGTCCAACTTTACTCAGCTGCATATGGTTTTAAGATGTTATTTTAATAACATGCAAGCttcttgtttttaatttttttgtgtATTACAACATGTAACACAAGCTAAACATTTTATACATTAAAATAATTTTAGGTGA

Function

NR:

description
CDKN2AIP N-terminal-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617525.2 True 1147 mRNA 0.40 3 15187394 15188882

Neighbor

gene id symbol gene type direction distance location
LOC110534908 LOC106603812 coding downstream 16199 15157675 ~ 15171195 (-)
LOC110533384 LOC106603816 coding downstream 33121 15140812 ~ 15154273 (-)
LOC110533383 skp1 coding downstream 47740 15129962 ~ 15139654 (-)
LOC110533382 LOC106603817 coding downstream 170309 15000151 ~ 15017085 (-)
LOC110533381 LOC106603818 coding downstream 191301 14980348 ~ 14996093 (-)
sar1a sar1a coding upstream 302121 15491003 ~ 15499136 (-)
LOC110534856 LOC106603798 coding upstream 829656 16018538 ~ 16057861 (-)
LOC110533417 snrpd2 coding upstream 876369 16065251 ~ 16068108 (-)
LOC110533418 LOC106603795 coding upstream 890748 16079630 ~ 16088437 (-)
LOC110533420 LOC106603794 coding upstream 905033 16093915 ~ 16117060 (-)
G858038 NA non-coding downstream 4281 15182640 ~ 15183113 (-)
G857984 NA non-coding downstream 115251 15071684 ~ 15072143 (-)
G857951 NA non-coding downstream 161829 15025362 ~ 15025565 (-)
G857941 NA non-coding downstream 189211 14997974 ~ 14998183 (-)
G857925 NA non-coding downstream 207270 14979032 ~ 14980124 (-)
G858049 NA non-coding upstream 10212 15199094 ~ 15199293 (-)
G858053 NA non-coding upstream 13278 15202160 ~ 15202475 (-)
G858580 NA non-coding upstream 77480 15266362 ~ 15280892 (-)
G858581 NA non-coding upstream 80983 15269865 ~ 15274100 (-)
G858579 NA non-coding upstream 90019 15278901 ~ 15286336 (-)
G858015 NA other downstream 69365 15117422 ~ 15118029 (-)
LOC110533380 LOC106603823 other downstream 614490 14557109 ~ 14794250 (-)
G856863 LOC106603829 other downstream 977012 14203533 ~ 14210382 (-)
G856872 NA other downstream 980178 14205272 ~ 14207216 (-)
G856922 NA other downstream 1002420 14184287 ~ 14184974 (-)
LOC110533421 LOC106603793 other upstream 952402 16141284 ~ 16185730 (-)
G859594 NA other upstream 1267666 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 2333379 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 3212613 18401495 ~ 18405409 (-)

Expression


Co-expression Network