sar1a (sar1a)


Basic Information

Item Value
gene id sar1a
gene name sar1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15491003 ~ 15499136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160665.1
AACGCGAAGGTGGAGAAGAAGACGTGAATTGCGTGCTCTCATTTGACCGTAAAGCAAATTTTCATGATTCTAAGAGCAAACATATTTCCTCAATTGATCTACACTTAGATAACGGGATTCACCAGCTCCGGATATGTCCTTCATATTTGATTGGATTTATAGTGGTTTCAGTAGCGTATTGCAGTTTCTAGGACTGTACAAGAAATCGGGCAAGTTAGTATTTCTTGGACTGGACAATGCTGGCAAGACGACGCTACTGCACATGCTCAAAGATGACAGATTGGGACAGCATGTGCCAACTTTACATCCAACCTCGGAAGAACTGACAATCGCTGGCATGACCTTCACCACCTTTGACCTTGGAGGCCATGCACAAGCCCGCAGAGTGTGGAAAAACTACCTCCCCGCCATCAACGGCATCGTCTTCCTTGTGGATTGCATCGACATCCCTAGATTGCCAGAGTCCAAAACAGAACTTGATGCTCTAATGACAGATGAGACCATTGGAAACGTGCCTATCCTGGTCCTCGGCAACAAGATTGACAAAACAGAAGCCGTCAGTGAGGAGAAACTACGTGAGATGTTTGGATTATATGGTCAGACAACAGGCAAGGGCAACATTCCCATGAAGGAGCTGAACACGAGACCACTGGAGGTGTTCATGTGCAGCGTGCTGAAGAGGCAGGGTTACGGCGAGGGCTTCCGCTGGCTCTCCCAGTACATTGACTAGAGCCCCGGCACCAGGAGGTGCTACAGGGAGACACCCCACTTCTACCGCCACCATACTCAGTCCCATGTTTGGTTTATAAAGTCTGCCTCCGCCACCAGAAAAAAACAGTACAACTTGAACCCAAGACTTTTATTGGTCTCCAGAACACTTTTTTGGGGTTACACTGTCTCTTTTTTTCCCAAGAGAATTAACATAGCATTGGTTCTGCAgaagtgttaaaaaaaaattcAAGCGGATTAATCTTTTCTATTTTGTTTCCATCTATTCGTGTGACAAATGCAGTATATAATTGTAAATCTGTAAATTAATCTAATCTGCCACCTTCCAACACATTTTGAGCAGTGAGACAGCTGATTAGTTGTACACATCGCTACACTTTTTTAACAGGAAAGGCAACATACAGACATGACTCGTGTTTAGTTTCATTAATGTCTTTTCTTCATCCTATATTTTTTACATAGTAAGAAGTGTGGCCAAGTAGACAGCAGCACTCACCTTAAAGAAAACACTTCCGTCTCTCTGGCTGTGTCATTTTCTTATAATAAACCGAGCCCTGCATTGATCTACATT

Function

symbol description
sar1a Predicted to enable GTPase activity. Involved in COPII-coated vesicle cargo loading. Part of COPII vesicle coat.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160665.1 True 1300 mRNA 0.44 7 15491003 15499136

Neighbor

gene id symbol gene type direction distance location
LOC110533385 LOC106603813 coding downstream 302121 15187394 ~ 15188882 (-)
LOC110534908 LOC106603812 coding downstream 319808 15157675 ~ 15171195 (-)
LOC110533384 LOC106603816 coding downstream 336730 15140812 ~ 15154273 (-)
LOC110533383 skp1 coding downstream 351349 15129962 ~ 15139654 (-)
LOC110533382 LOC106603817 coding downstream 473918 15000151 ~ 15017085 (-)
LOC110534856 LOC106603798 coding upstream 519402 16018538 ~ 16057861 (-)
LOC110533417 snrpd2 coding upstream 566115 16065251 ~ 16068108 (-)
LOC110533418 LOC106603795 coding upstream 580494 16079630 ~ 16088437 (-)
LOC110533420 LOC106603794 coding upstream 594779 16093915 ~ 16117060 (-)
LOC110533421 LOC106603793 coding upstream 642182 16141284 ~ 16185730 (-)
G858732 NA non-coding downstream 3700 15487050 ~ 15487303 (-)
G858728 NA non-coding downstream 8120 15482672 ~ 15482883 (-)
G858727 NA non-coding downstream 9449 15481349 ~ 15481554 (-)
G858726 NA non-coding downstream 9891 15480868 ~ 15481112 (-)
G858725 NA non-coding downstream 10163 15480482 ~ 15480840 (-)
G858746 NA non-coding upstream 21796 15520932 ~ 15521879 (-)
G858749 NA non-coding upstream 25239 15524375 ~ 15524580 (-)
G858756 NA non-coding upstream 33004 15532140 ~ 15532357 (-)
G858717 NA non-coding upstream 37495 15536631 ~ 15537317 (-)
G858811 NA non-coding upstream 132715 15631851 ~ 15632395 (-)
G858015 NA other downstream 372974 15117422 ~ 15118029 (-)
LOC110533380 LOC106603823 other downstream 918099 14557109 ~ 14794250 (-)
G856863 LOC106603829 other downstream 1280621 14203533 ~ 14210382 (-)
G856872 NA other downstream 1283787 14205272 ~ 14207216 (-)
G856922 NA other downstream 1306029 14184287 ~ 14184974 (-)
G859594 NA other upstream 957412 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 2023125 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 2902359 18401495 ~ 18405409 (-)

Expression


Co-expression Network