Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110533411 |
| gene name | LOC106603809 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 15499633 ~ 15523339 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protein transport protein Sec24A-like isoform X2 |
| id | description |
|---|---|
| K14007 | SEC24; protein transport protein SEC24 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021617569.2 | False | 5022 | mRNA | 0.51 | 24 | 15499633 | 15523339 |
| XM_021617570.2 | True | 4943 | mRNA | 0.52 | 23 | 15499634 | 15523339 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534855 | LOC106603811 | coding | upstream | 17415 | 15208176 ~ 15482337 (+) |
| ube2b | ube2b | coding | upstream | 313728 | 15171314 ~ 15185905 (+) |
| tcf7 | skp1 | coding | upstream | 369723 | 15066890 ~ 15138685 (+) |
| LOC110533377 | LOC106603825 | coding | upstream | 1069347 | 14279497 ~ 14430286 (+) |
| LOC110533378 | LOC106603820 | coding | upstream | 1224435 | 14224203 ~ 14275198 (+) |
| LOC110533412 | NA | coding | downstream | 20431 | 15543770 ~ 15607192 (+) |
| sytl2a | sytl2 | coding | downstream | 92370 | 15615709 ~ 15662249 (+) |
| LOC110533414 | LOC106603806 | coding | downstream | 140146 | 15663485 ~ 15666551 (+) |
| LOC110533415 | LOC106603804 | coding | downstream | 157873 | 15681212 ~ 15993975 (+) |
| LOC110533419 | LOC106603797 | coding | downstream | 543059 | 16066398 ~ 16078694 (+) |
| G858196 | NA | non-coding | upstream | 9662 | 15489516 ~ 15489971 (+) |
| G858195 | NA | non-coding | upstream | 10279 | 15489122 ~ 15489354 (+) |
| G858194 | NA | non-coding | upstream | 10625 | 15488649 ~ 15489008 (+) |
| G858193 | NA | non-coding | upstream | 11235 | 15488150 ~ 15488398 (+) |
| G858190 | NA | non-coding | upstream | 12687 | 15486614 ~ 15486946 (+) |
| G858204 | NA | non-coding | downstream | 3529 | 15526868 ~ 15527084 (+) |
| G858225 | NA | non-coding | downstream | 59230 | 15582569 ~ 15583374 (+) |
| G858176 | NA | non-coding | downstream | 66756 | 15590095 ~ 15622861 (+) |
| G858274 | NA | non-coding | downstream | 150389 | 15673728 ~ 15674032 (+) |
| G858275 | NA | non-coding | downstream | 157340 | 15680679 ~ 15680914 (+) |
| G858148 | NA | other | upstream | 64885 | 15414440 ~ 15434748 (+) |
| G856353 | NA | other | upstream | 1725051 | 13773887 ~ 13774582 (+) |
| G855498 | NA | other | upstream | 2478601 | 13016534 ~ 13021032 (+) |
| G855483 | LOC106603848 | other | upstream | 2509791 | 12985031 ~ 12989842 (+) |
| G858203 | NA | other | downstream | 3050 | 15526389 ~ 15526807 (+) |
| G858416 | NA | other | downstream | 350690 | 15874029 ~ 15878692 (+) |
| G860453 | NA | other | downstream | 1578576 | 17101915 ~ 17102467 (+) |
| G860570 | NA | other | downstream | 1802901 | 17326240 ~ 17326929 (+) |
| G860846 | NA | other | downstream | 1972273 | 17495612 ~ 17499171 (+) |
