LOC110533414 (LOC106603806)


Basic Information

Item Value
gene id LOC110533414
gene name LOC106603806
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15663485 ~ 15666551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617588.2
CGTGAGTTGAGTCGCCATTTTGACTTTGTGGGTGTGGTAACCTGTGAAAACCATTTCCGCAGGTTGAGTCGCCATTCTTTGCGTCCTTTGTACGTTTAGAAGTTGTCTCCGCTAGTCAGCAAGTAGTTGTTTCGGGATTAGACAAATTTACAGACTGTCAAACAAGATCGAATCTTTTCCTACGAAAGCTGAATAATATTACGAACAAATAGCTACAATAGGATCCAGTTAAAGCTTCACGGACGATAATCTGAGCGGGAATACATTGGTGGTGTCCCTCATCAAAAGCTAAAAATGATCACCAGACGAAGAGGTCGTTCAGACATCACCAATGTGGAGGTGCACTCTTCAACTTGTCCTTTTGACGTTGAAGTCACTGACTTTGTTGAAATGATAGAAAATGTTAAAACGAGTCCCTCTGAAGAAATTAGGTCAGAGAATGGGGATAGTACAGTTGGATTAGAGCTGGATGATTTATTTGGAATTGACGAGTTAAACTGGACATTTGAGAAGGATGCAGTCTCCCCTCTTTTCGACATTGGGTTGACCGAAATAGGTGTGGGTGACACAACAGATCAAGATTTTTGGATTGGCACGTCCAGGACCCCATCGCCCGAAGGAGTGTTTGCTGTTCAGAAAAGGAAGGGGAGAGATGACCCGTCTGGGCACATGATCAACAAAAACGCTGTCGCTGCGCGAATTAATCGTCTGAAAAAGAAGGAATACGTGAACGGGCTGGAAAATAAAGTTGGGTCTCTGTCGTCAGAAAACCGCATACTCAAACAGGAAAACGTCCAATTGAATAAGAGGGTAGAAGAGTTGGAAGATGAGACGAGGTACCTGAGAGCTGTGTTGGCCAACGAGAGCATGTTAGCCCAGCTGTTGTCAAGGCTGAGCGGTGTGAACGGCATGAAATTATCTTCCTCGCTTTTCCAGGGGTCCAACAAGAATGACGACCACGATTATGCCTTGCCGCGGAAACGTGTGAAGGTGGAGGAAAAGGAGACTTCTGGTGGCGTCTGTCTGCACGTGGACAAGAACAACGTCTCAGTGGAGTTCTGCACTAAGTGTGCAGAGAGTGCAAGCGCATCACTCAAAATTTTTCTTCTAGGTGATGATTGTTCTACCATGCTGGATGAATGGGTTACAGAACGTCCCTGTCTGCTTGGCTCCATGTGGATTCTGCTGTTCGGGAAGCTGAAGAGGCGGGACCCGCTGCTGCCAACTTGGCCTGGTATTTTTTTAAAGGTAGTATAACAAAGGGTGTAAGTGACTACATTCAACCAGTATCCCATAACACCTTCTTTGTAAAAAAGTAGTGAATTTAGAATATATTATGGATGACAAGTGTTCCACTACCTATTACATTGACAATATTAGAGGTCCTATTACAGTTTGTTCACAAGTTTAACCTGACTTGTTGACACATTGGTATGTAACccagttgtttaaaaaaaaaaactagtcaAACTATCTTGTTATCGATGTGATCCTGATAGAAATGGACATCACCAATTTTGTATAAAGTGACAATCTTAACGAATGTTATGTAAAGTACAAAGATGTGGCAACTTTTTTTTCTAAATGAGAGAACAATGTTTCAGGAACATGGATATGATTGAAAATAAATCTTATTTTGATTATACA
>XM_036989770.1
CGTGAGTTGAGTCGCCATTTTGACTTTGTGGGTGTGGTAACCTGTGAAAACCATTTCCGCAGGTTGAGTCGCCATTCTTTGCGTCCTTTGTACGTTTAGAAGTTGTCTCCGCTAGTCAGCAAGTAGTTGTTTCGGGATTAGACAAATTTACAGACTGTCAAACAAGATCGAATCTTTTCCTACGAAAGCTGAATAATATTACGAACAAATAGCTACAATAGGATCCAGTTAAAGCTTCACGGACGATAATCTGAGCGGGAATACATTGGTGGTGTCCCTCATCAAAAGCTAAAAATGATCACCAGACGAAGAGGTCGTTCAGACATCACCAATGTGGAGGTGCACTCTTCAACTTGTCCTTTTGACGTTGAAGTCACTGACTTTGTTGAAATGATAGAAAATGTTAAAACGAGTCCCTCTGAAGAAATTAGGTCAGAGAATGGGGATAGTACAGTTGGATTAGAGCTGGATGATTTATTTGGAATTGACGAGTTAAACTGGACATTTGAGAAGGATGCAGTCTCCCCTCTTTTCGACATTGGGTTGACCGAAATAGGTGTGGGTGACACAACAGATCAAGATTTTTGGATTGGCACGTCCAGGACCCCATCGCCCGAAGGAGTGTTTGCTGTTCAGAAAAGGAAGGGGAGAGATGACCCGTCTGGGCACATGATCAACAAAAACGCTGTCGCTGCGCGAATTAATCGTCTGAAAAAGAAGGAATACGTGAACGGGCTGGAAAATAAAGTTGGGTCTCTGTCGTCAGAAAACCGCATACTCAAACAGGAAAACGTCCAATTGAATAAGAGGGTAGAAGAGTTGGAAGATGAGACGAGGTACCTGAGAGCTGTGTTGGCCAACGAGAGCATGTTAGCCCAGCTGTTGTCAAGGCTGAGCGGTGTGAACGGCATGAAATTATCTTCCTCGCTTTTCCAGGGGTCCAACAAGAATGACGACCACGATTATGCCTTGCCGCGGAAACGTGTGAAGGTGGAGGAAAAGGAGACTTCTGGTGGCGTCTGTCTGCACGTGGACAAGAACAACGTCTCAGTGGAGTTCTGCACTAAGTGTGCAGAGAGTGCAAGCGCATCACTCAAAATTTTTCTTCTAGGTGATGATTGTTCTACCATGCTGGATGAATGGGTTACAGAACGTCCCTGTCTGCTTGGCTCCATGGTAAGGATCTCAGATGAAGAAAAGCTGATGATTTGATAAATTCTAAGTGGATTCTGCTGTTCGGGAAGCTGAAGAGGCGGGACCCGCTGCTGCCAACTTGGCCTGGTATTTTTTTAAAGGTAGTATAACAAAGGGTGTAAGTGACTACATTCAACCAGTATCCCATAACACCTTCTTTGTAAAAAAGTAGTGAATTTAGAATATATTATGGATGACAAGTGTTCCACTACCTATTACATTGACAATATTAGAGGTCCTATTACAGTTTGTTCACAAGTTTAACCTGACTTGTTGACACATTGGTATGTAACccagttgtttaaaaaaaaaaactagtcaAACTATCTTGTTATCGATGTGATCCTGATAGAAATGGACATCACCAATTTTGTATAAAGTGACAATCTTAACGAATGTTATGTAAAGTACAAAGATGTGGCAACTTTTTTTTCTAAATGAGAGAACAATGTTTCAGGAACATGGATATGATTGAAAATAAATCTTATTTTGATTATACA
>XR_005053589.1
CGTGAGTTGAGTCGCCATTTTGACTTTGTGGGTGTGGTAACCTGTGAAAACCATTTCCGCAGGTTGAGTCGCCATTCTTTGCGTCCTTTGTACGTTTAGAAGTTGTCTCCGCTAGTCAGCAAGTAGTTGTTTCGGGATTAGACAAATTTACAGACTGTCAAACAAGATCGAATCTTTTCCTACGAAAGCTGAATAATATTACGAACAAATAGCTACAATAGGATCCAGTTAAAGCTTCACGGACGATAATCTGAGCGGGAATACATTGGTGGTGTCCCTCATCAAAAGCTAAAAATGATCACCAGACGAAGAGGTCGTTCAGACATCACCAATGTGGAGGTGCACTCTTCAACTTGTCCTTTTGACGTTGAAGTCACTGACTTTGTTGAAATGATAGAAAATGTTAAAACGAGTCCCTCTGAAGAAATTAGGTCAGAGAATGGGGATAGTACAGTTGGATTAGAGCTGGATGATTTATTTGGAATTGACGAGTTAAACTGGACATTTGAGAAGGATGCAGTCTCCCCTCTTTTCGACATTGGGTTGACCGAAATAGGTGTGGGTGACACAACAGATCAAGATTTTTGGATTGGCACGTCCAGGACCCCATCGCCCGAAGGAGTGTTTGCTGTTCAGAAAAGGAAGGGGAGAGATGACCCGTCTGGGCACATGATCAACAAAAACGCTGTCGCTGCGCGAATTAATCGTCTGAAAAAGAAGGAATACGTGAACGGGCTGGAAAATAAAGTTGGGTCTCTGTCGTCAGAAAACCGCATACTCAAACAGGAAAACGTCCAATTGAATAAGAGGGTAGAAGAGTTGGAAGATGAGACGAGGTACCTGAGAGCTGTGTTGGCCAACGAGAGCATGTTAGCCCAGCTGTTGTCAAGGCTGAGCGGTGTGAACGGCATGAAATTATCTTCCTCGCTTTTCCAGGGGTCCAACAAGAATGACGACCACGATTATGCCTTGCCGCGGAAACGTGTGAAGGTGGAGGAAAAGGAGACTTCTGGTGGCGTCTGTCTGCACGTGGACAAGAACAACGTCTCAGTGGAGTTCTGCACTAAGTGTGCAGAGAGTGCAAGCGCATCACTCAAAATGTAGGGTCAAGTACTTGTATCTGTTTTCAGATGTTGAGACTGAACCTGATTAACTTCAGTGTAATGAACGTCAGGGGAATCTATGAACACTGTTAAAACTATTTGAGATCAATACTTAATTAAGAAATGTTGAATGATTGAGCATGTGTAAAAAATCTTACCAATGATTTAAGTACACGTTACTCGTTAAACCTTGTTGCCAGTTTTCTTCTAGGTGATGATTGTTCTACCATGCTGGATGAATGGGTTACAGAACGTCCCTGTCTGCTTGGCTCCATGGTAAGGATCTCAGATGAAGAAAAGCTGATGATTTGATAAATTCTAAGTGGATTCTGCTGTTCGGGAAGCTGAAGAGGCGGGACCCGCTGCTGCCAACTTGGCCTGGTATTTTTTTAAAGGTAGTATAACAAAGGGTGTAAGTGACTACATTCAACCAGTATCCCATAACACCTTCTTTGTAAAAAAGTAGTGAATTTAGAATATATTATGGATGACAAGTGTTCCACTACCTATTACATTGACAATATTAGAGGTCCTATTACAGTTTGTTCACAAGTTTAACCTGACTTGTTGACACATTGGTATGTAACccagttgtttaaaaaaaaaaactagtcaAACTATCTTGTTATCGATGTGATCCTGATAGAAATGGACATCACCAATTTTGTATAAAGTGACAATCTTAACGAATGTTATGTAAAGTACAAAGATGTGGCAACTTTTTTTTCTAAATGAGAGAACAATGTTTCAGGAACATGGATATGATTGAAAATAAATCTTATTTTGATTATACA

Function

NR:

description
CREB/ATF bZIP transcription factor-like

GO: NA

KEGG:

id description
K21548 CREBZF; ATF/CREB family transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617588.2 False 1647 mRNA 0.42 4 15663485 15666551
XM_036989770.1 False 1694 mRNA 0.42 4 15663485 15666551
XR_005053589.1 True 1897 mRNA 0.41 3 15663485 15666551

Neighbor

gene id symbol gene type direction distance location
sytl2a sytl2 coding upstream 1236 15615709 ~ 15662249 (+)
LOC110533412 NA coding upstream 56293 15543770 ~ 15607192 (+)
LOC110533411 LOC106603809 coding upstream 140146 15499633 ~ 15523339 (+)
LOC110534855 LOC106603811 coding upstream 181267 15208176 ~ 15482337 (+)
ube2b ube2b coding upstream 477580 15171314 ~ 15185905 (+)
LOC110533415 LOC106603804 coding downstream 14661 15681212 ~ 15993975 (+)
LOC110533419 LOC106603797 coding downstream 399847 16066398 ~ 16078694 (+)
smtlb LOC100196589 coding downstream 1507258 17173809 ~ 17176871 (+)
LOC110533429 nhlrc3 coding downstream 1678840 17345391 ~ 17359625 (+)
emsy LOC106603772 coding downstream 1696134 17362685 ~ 17395892 (+)
G858176 NA non-coding upstream 40624 15590095 ~ 15622861 (+)
G858225 NA non-coding upstream 80111 15582569 ~ 15583374 (+)
G858204 NA non-coding upstream 136401 15526868 ~ 15527084 (+)
G858196 NA non-coding upstream 173514 15489516 ~ 15489971 (+)
G858195 NA non-coding upstream 174131 15489122 ~ 15489354 (+)
G858274 NA non-coding downstream 7177 15673728 ~ 15674032 (+)
G858275 NA non-coding downstream 14128 15680679 ~ 15680914 (+)
G858304 NA non-coding downstream 61938 15728489 ~ 15729710 (+)
G858330 NA non-coding downstream 96847 15763398 ~ 15763699 (+)
G858377 NA non-coding downstream 155267 15821818 ~ 15830938 (+)
G858203 NA other upstream 136678 15526389 ~ 15526807 (+)
G858148 NA other upstream 228737 15414440 ~ 15434748 (+)
tcf7 skp1 other upstream 550986 15066890 ~ 15138685 (+)
G856353 NA other upstream 1888903 13773887 ~ 13774582 (+)
G855498 NA other upstream 2642453 13016534 ~ 13021032 (+)
G858416 NA other downstream 207478 15874029 ~ 15878692 (+)
G860453 NA other downstream 1435364 17101915 ~ 17102467 (+)
G860570 NA other downstream 1659689 17326240 ~ 17326929 (+)
G860846 NA other downstream 1829061 17495612 ~ 17499171 (+)
cenatac ccdc84 other downstream 3394763 19057354 ~ 19068272 (+)

Expression


Co-expression Network