LOC110533417 (snrpd2)


Basic Information

Item Value
gene id LOC110533417
gene name snrpd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 16065251 ~ 16068108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617591.2
TCAAGAGTGCAGTTGAGTATTCATTTAATGTATCAACTAAATGCGTTTGTTTTGCAATGTGTGCTGGGATTTGGTTGTAATGAGCTTGCTCAAAGTTTACTGAATCGTTCTTAtacaggctagctagctaacgttagtgtgCTTGAATCTGAATTGCTCACGTTAGCTGCAAGTTATAGAGAGCTAGCTCGCTAACCATTATTGATAGCTAAACAAAATAATCAGGAGTTTGCTGAATAAACCCAAGTCTGAGATGACTCCAGAAGAGTTGCAGAAACGAGAGGAGGAAGAATTCAACACTGGACCACTGTCTGTGCTCACCCAGTCCGTGAAAAGCAACACACAAGTCCTCGTCAACTGCCGCAACAACAAAAAGCTACTTGGACGAGTCAAAGCCTTCGACAGGCACTGCAACATGGTGTTGGAgaatgtgaaggagatgtggaCAGAGGTCCCGAAGAGTGGCAAGGGGAAAAAGAAGTCCAAGCCAGTGAACAAGGACCGGTACATCTCTAAGATGTTTCTGAGAGGGGACTCTGTCATTGTTGTGTTGAGGAACCCTCTTATCACTGGGACTGGGGGGAAGTAGACTGACATCTCACCCAAAGTCTGTACCACACTGGGTCATAATAATTAGTACACACCGTCCCGCCCCGTTTTGGTCAGTTTTCTTCTGTTTCTAATGAATACTACCCTGCTTTAGCTGAGAAACTGCAAGAGCAGGGCCATGTTCATCAGGGCACAATGTTGTGGAATGTTCAAGCCCCTTTTTAGAATGAGCAATCGCATCAATCTAAAATGTTCCACAGCATTTGTCAAGTACATGAGATTGTTTTAGTCACTCGGTCTTTTCAATCTGTTTGCTCTCCACACCAGGGCTGCGTTCAACAGGCCACAATGTTGTAGAACATTTGGATATAAATCTACAATGTGGAACAAACATGCGTCTCTGACATCTAGAATAAGGAATCACGTCAGCTctattcattacatttctataTTAAACGTTCCACAATGTTTGACTACTAAACGTGGCCCTGGGTCAAGTTCTGTAGGCATGACATGGAGAAACTtttttagtagtagtggtggtatttCTCGAACACTTTGTTTTCCATTTTTAAGTCTTATATATTTCTGCTTACTGAATTCGGCTCAGAACTCGATTAATCATGGATATTGGATCTCTTTCAGTAAGGCCCAAGTTTTCAAAAAGTGCTCTGCAACAGGACATCAACTAAATCAGAATTTATTTCTTCCAACCTGTTAGAGCTGAGAGATTAGTTTGACCATATGTGACCATAAGTTGCCCTTTTGAACATGACCCCTCTGTTTATGTTATGATTTAATATGGTTTGATATGATTCCAACATCCAACACACATAATGGAGACAAATTAATATTATTGGCTAATCTTGTCATAGTTTTTCAAACTGCTGAATTTTGTACTCAAAGCTCCAATCTGATCTCGGCCTGTTTTATTATTGAGGCGGTGATAAAATTCCTACAAGGAACATATTGTTTTTTCTCTTTGTTTACTATTTTAataaacaaatgtttttgttctatATCTCTGAAAG
>XM_021617592.2
GCCAGTAGATGCCGCCACATTGTGTCCATTGTTAGGACTGCAGAGGAGCCTTTAATTTACCCGGAAGTATTTGGTATTTTTCGCGCAACGTTTTCAGTCCGAAAGAATTTTCTCCTCATTCATTCAGAACATAAATAACACCAATTCACAAACATGAGTTTGCTGAATAAACCCAAGTCTGAGATGACTCCAGAAGAGTTGCAGAAACGAGAGGAGGAAGAATTCAACACTGGACCACTGTCTGTGCTCACCCAGTCCGTGAAAAGCAACACACAAGTCCTCGTCAACTGCCGCAACAACAAAAAGCTACTTGGACGAGTCAAAGCCTTCGACAGGCACTGCAACATGGTGTTGGAgaatgtgaaggagatgtggaCAGAGGTCCCGAAGAGTGGCAAGGGGAAAAAGAAGTCCAAGCCAGTGAACAAGGACCGGTACATCTCTAAGATGTTTCTGAGAGGGGACTCTGTCATTGTTGTGTTGAGGAACCCTCTTATCACTGGGACTGGGGGGAAGTAGACTGACATCTCACCCAAAGTCTGTACCACACTGGGTCATAATAATTAGTACACACCGTCCCGCCCCGTTTTGGTCAGTTTTCTTCTGTTTCTAATGAATACTACCCTGCTTTAGCTGAGAAACTGCAAGAGCAGGGCCATGTTCATCAGGGCACAATGTTGTGGAATGTTCAAGCCCCTTTTTAGAATGAGCAATCGCATCAATCTAAAATGTTCCACAGCATTTGTCAAGTACATGAGATTGTTTTAGTCACTCGGTCTTTTCAATCTGTTTGCTCTCCACACCAGGGCTGCGTTCAACAGGCCACAATGTTGTAGAACATTTGGATATAAATCTACAATGTGGAACAAACATGCGTCTCTGACATCTAGAATAAGGAATCACGTCAGCTctattcattacatttctataTTAAACGTTCCACAATGTTTGACTACTAAACGTGGCCCTGGGTCAAGTTCTGTAGGCATGACATGGAGAAACTtttttagtagtagtggtggtatttCTCGAACACTTTGTTTTCCATTTTTAAGTCTTATATATTTCTGCTTACTGAATTCGGCTCAGAACTCGATTAATCATGGATATTGGATCTCTTTCAGTAAGGCCCAAGTTTTCAAAAAGTGCTCTGCAACAGGACATCAACTAAATCAGAATTTATTTCTTCCAACCTGTTAGAGCTGAGAGATTAGTTTGACCATATGTGACCATAAGTTGCCCTTTTGAACATGACCCCTCTGTTTATGTTATGATTTAATATGGTTTGATATGATTCCAACATCCAACACACATAATGGAGACAAATTAATATTATTGGCTAATCTTGTCATAGTTTTTCAAACTGCTGAATTTTGTACTCAAAGCTCCAATCTGATCTCGGCCTGTTTTATTATTGAGGCGGTGATAAAATTCCTACAAGGAACATATTGTTTTTTCTCTTTGTTTACTATTTTAataaacaaatgtttttgttctatATCTCTGAAAG

Function

symbol description
snrpd2 Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of spliceosomal complex and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide).

NR:

description
small nuclear ribonucleoprotein Sm D2

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0034709 methylosome cellular_component
GO:0034715 pICln-Sm protein complex cellular_component
GO:0034719 SMN-Sm protein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0019013 viral nucleocapsid cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005687 U4 snRNP cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K11096 SNRPD2, SMD2; small nuclear ribonucleoprotein D2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617591.2 False 1580 mRNA 0.40 3 16065251 16067947
XM_021617592.2 True 1510 mRNA 0.41 3 16065251 16068108

Neighbor

gene id symbol gene type direction distance location
LOC110534856 LOC106603798 coding downstream 7390 16018538 ~ 16057861 (-)
sar1a sar1a coding downstream 566115 15491003 ~ 15499136 (-)
LOC110533385 LOC106603813 coding downstream 876369 15187394 ~ 15188882 (-)
LOC110534908 LOC106603812 coding downstream 894056 15157675 ~ 15171195 (-)
LOC110533384 LOC106603816 coding downstream 910978 15140812 ~ 15154273 (-)
LOC110533418 LOC106603795 coding upstream 11522 16079630 ~ 16088437 (-)
LOC110533420 LOC106603794 coding upstream 25807 16093915 ~ 16117060 (-)
LOC110533421 LOC106603793 coding upstream 73210 16141284 ~ 16185730 (-)
gramd1ba LOC106603792 coding upstream 118346 16186454 ~ 16332213 (-)
LOC110533423 LOC106567546 coding upstream 295457 16363563 ~ 16485767 (-)
G859035 NA non-coding downstream 17319 15993303 ~ 16047932 (-)
G859002 NA non-coding downstream 145381 15914990 ~ 15919870 (-)
G858913 NA non-coding downstream 151940 15798893 ~ 15913311 (-)
G859272 NA non-coding upstream 53339 16121447 ~ 16125648 (-)
G859274 NA non-coding upstream 57583 16125691 ~ 16126188 (-)
G859277 NA non-coding upstream 62173 16130281 ~ 16130514 (-)
G859284 NA non-coding upstream 62997 16131105 ~ 16131351 (-)
G859285 NA non-coding upstream 63546 16131654 ~ 16131960 (-)
G858015 NA other downstream 947222 15117422 ~ 15118029 (-)
LOC110533380 LOC106603823 other downstream 1492347 14557109 ~ 14794250 (-)
G856863 LOC106603829 other downstream 1854869 14203533 ~ 14210382 (-)
G856872 NA other downstream 1858035 14205272 ~ 14207216 (-)
G859594 NA other upstream 388440 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 1454153 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 2333387 18401495 ~ 18405409 (-)
G862927 NA other upstream 2957234 19025342 ~ 19027578 (-)

Expression


Co-expression Network