LOC110533418 (LOC106603795)


Basic Information

Item Value
gene id LOC110533418
gene name LOC106603795
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 16079630 ~ 16088437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617593.2
tgTTTCCACTATTTTGGCATTTACCTGTTAAACCAACTGTCATGAAAGTGCGCCCACTTAATTAGGCGTGTCGCAGTCTATCTGTATGACCTTATAGCCTACCTGTGGACGGGGGTGTTTGGTACGAGCACCTTGGATCTTTCCTCTTCATTTTCCCCCGCTTTTTTGTACAGGCGGACTGTGTGTCTCTACTCCGTTTTTTTTGTGATAACAGCTCGGGGAACTGGCAGATAGTCCTACCGCGAGCAAGAGATGGGGAACACGGTAACGAGGGATGACTTCGAGTGGGTATATACGGAGCAACCGCACTGTAGTCGGAGGAAGCAGATATTAGcCAAGCACCCAGAGATCAAGTCTTTGATGGGCCCTGACCCCCAGCTCAAGTGGGTGGTGACAGCCATGGTCCTAACCCAGGTGCTCTGCTGCTTCCTGGTACGTGACCTCAGCTGGAAGTGGCTAATCTTCTGGGCCTACATGTTTGGCGGTTGCATCAACCACTCCCTCACGCTCGCCATCCACGACATCTCGCACAATGTGGCCTTTGGGAATAAGGACGCTATGTGCAACCGCCTCTTTGGCATCTTCGCCAACCTACCAATTGGCGTGCCCTACTCCATCAGCTTCAAGAAGTACCATGTGGACCACCACCGTTACCTGGGTGGCCATGGACTCGACGTGGACGTCCCGACCCACCTGGAGGCTCGTCTCTTCAGCTCCCCCGCACGCAAGATCCTGTGGCTCTTCCTGCAGCCGCTATTCTACGCGCTTCGTCCCCTGGTGGTCAACCCTAAACCTGTAGGCAGGCTCGAGCTGTTGAATTTAATGGTGCAGCTAGCATTCAATGCTTTCATAGTGTACCTCTGGGGGCTTAAGCCTCTGGTCTACCTGATAGCAGGTTCGCTGTTGTGTATGGGACTGCACCCGATCTCGGGGCATTTTATCGCCGAACACTATATGTACCTGAGCGGGATCGAGACGTACTCGTACTACGGGCCGCTGAACTATATCACCTTTAATGTGGGCTACCACATGGAGCACCATGACTTTCCCAGCATCCCCGGCAGCCGGCTCCCTCAGGTGAAACAGATGGCTCCAGAGTTCTATGATGATTTACCACAGCATGACTCATGGACACGGGTGCTCTGGGACTTTGTGTTTTGTGATTCGCTTGGACCTTACTCCAGAATTAAACGCACCTTCCCATTGGCTAAGCAAGACTAAGAGCCCATGCTCTTGATCTTCTGACCAATGATCTTCCACAAAAGTGGCTTGACAACCCAGCTGGCGGGGAGTGAAAGGCTTCTCATTTCTTGTCCAGATCTTTTACTCTGTAGACAAGACTGGTGTGCTGGTGTCACATTCAACTCACCAGCATGAGAGGACTCTTAACACTTTTGAATGTTATGTTACCTTAGAGATACTGTAAACTATGCTATCCAGATGTATTGTATATACTGGGTAGAATAAAAGGTACTCAGCTGATTGTGATGAATAATTGATCATAAACTTTATGACTGTGATGGTAAATCTAAACAGTTGCAGTTGTTCCCCCAGAAAAGTCTTATTTGTACATTAATTTCCTGGGTCATGTTCTTTATGCACCAAATGGGAtgaactacctgaacttgtccaataacaaatattattttttattgttcCCTAAATCCCATCTTGGATTAATGATTCACGCAGACTTCTCATTCCTAACTCACAATATTGAACTAACTTGTTATAGTATTTACTAATTGTTATGGCTTACTGGCTTGATCTTCTAGAGTACAAATGTTACCATTTTTCCCTGATCTGTGTTGCAA
>XM_036989796.1
atactttgtatccctcatttactcaaatgTTTCCACTATTTTGGCATTTACCTGTTAAACCAACTGTCATGAAAGTGCGCCCACTTAATTAGGCGTGTCGCAGTCTATCTGTATGACCTTATAGCCTACCTGTGGACGGGGGTGTTTGCTCGGGGAACTGGCAGATAGTCCTACCGCGAGCAAGAGATGGGGAACACGGTAACGAGGGATGACTTCGAGTGGGTATATACGGAGCAACCGCACTGTAGTCGGAGGAAGCAGATATTAGcCAAGCACCCAGAGATCAAGTCTTTGATGGGCCCTGACCCCCAGCTCAAGTGGGTGGTGACAGCCATGGTCCTAACCCAGGTGCTCTGCTGCTTCCTGGTACGTGACCTCAGCTGGAAGTGGCTAATCTTCTGGGCCTACATGTTTGGCGGTTGCATCAACCACTCCCTCACGCTCGCCATCCACGACATCTCGCACAATGTGGCCTTTGGGAATAAGGACGCTATGTGCAACCGCCTCTTTGGCATCTTCGCCAACCTACCAATTGGCGTGCCCTACTCCATCAGCTTCAAGAAGTACCATGTGGACCACCACCGTTACCTGGGTGGCCATGGACTCGACGTGGACGTCCCGACCCACCTGGAGGCTCGTCTCTTCAGCTCCCCCGCACGCAAGATCCTGTGGCTCTTCCTGCAGCCGCTATTCTACGCGCTTCGTCCCCTGGTGGTCAACCCTAAACCTGTAGGCAGGCTCGAGCTGTTGAATTTAATGGTGCAGCTAGCATTCAATGCTTTCATAGTGTACCTCTGGGGGCTTAAGCCTCTGGTCTACCTGATAGCAGGTTCGCTGTTGTGTATGGGACTGCACCCGATCTCGGGGCATTTTATCGCCGAACACTATATGTACCTGAGCGGGATCGAGACGTACTCGTACTACGGGCCGCTGAACTATATCACCTTTAATGTGGGCTACCACATGGAGCACCATGACTTTCCCAGCATCCCCGGCAGCCGGCTCCCTCAGGTGAAACAGATGGCTCCAGAGTTCTATGATGATTTACCACAGCATGACTCATGGACACGGGTGCTCTGGGACTTTGTGTTTTGTGATTCGCTTGGACCTTACTCCAGAATTAAACGCACCTTCCCATTGGCTAAGCAAGACTAAGAGCCCATGCTCTTGATCTTCTGACCAATGATCTTCCACAAAAGTGGCTTGACAACCCAGCTGGCGGGGAGTGAAAGGCTTCTCATTTCTTGTCCAGATCTTTTACTCTGTAGACAAGACTGGTGTGCTGGTGTCACATTCAACTCACCAGCATGAGAGGACTCTTAACACTTTTGAATGTTATGTTACCTTAGAGATACTGTAAACTATGCTATCCAGATGTATTGTATATACTGGGTAGAATAAAAGGTACTCAGCTGATTGTGATGAATAATTGATCATAAACTTTATGACTGTGATGGTAAATCTAAACAGTTGCAGTTGTTCCCCCAGAAAAGTCTTATTTGTACATTAATTTCCTGGGTCATGTTCTTTATGCACCAAATGGGAtgaactacctgaacttgtccaataacaaatattattttttattgttcCCTAAATCCCATCTTGGATTAATGATTCACGCAGACTTCTCATTCCTAACTCACAATATTGAACTAACTTGTTATAGTATTTACTAATTGTTATGGCTTACTGGCTTGATCTTCTAGAGTACAAATGTTACCATTTTTCCCTGATCTGTGTTGCAA
>XM_036989797.1
ctcaaatgTTTCCACTATTTTGGCATTTACCTGTTAAACCAACTGTCATGAAAGTGCGCCCACTTAATTAGGCGTGTCGCAGTCTATCTGTATGACCTTATAGCCTACCTGTGGACGGGGGTGTTTGGTACGAGCACCTTGGATCTTTCCTCTTCATTTTCCCCCGCTTTTTTGTACAGGCGGACTGTGTGTCTCTACTCCGTTTTTTTTGTGATAACAGCTCGGGGAACTGGCAGATAGTCCTACCGCGAGCAAGAGATGGGGAACACGGTAACGAGGGATGACTTCGAGTGGGTATATACGGAGCAACCGCACTGTAGTCGGAGGAAGCAGATATTAGcCAAGCACCCAGAGATCAAGTCTTTGATGGGCCCTGACCCCCAGCTCAAGTGGGTGGTGACAGCCATGGTCCTAACCCAGGTGCTCTGCTGCTTCCTGGTACGTGACCTCAGCTGGAAGTGGCTAATCTTCTGGGCCTACATGTTTGGCGGTTGCATCAACCACTCCCTCACGCTCGCCATCCACGACATCTCGCACAATGTGGCCTTTGGGAATAAGGACGCTATGTGCAACCGCCTCTTTGGCATCTTCGCCAACCTACCAATTGGCGTGCCCTACTCCATCAGCTTCAAGAAGTACCATGTGGACCACCACCGTTACCTGGGTGGCCATGGACTCGACGTGGACGTCCCGACCCACCTGGAGGCTCGTCTCTTCAGCTCCCCCGCACGCAAGATCCTGTGGCTCTTCCTGCAGCCGCTATTCTACGCGCTTCGTCCCCTGGTGGTCAACCCTAAACCTGTAGGCAGGCTCGAGCTGTTGAATTTAATGGTGCAGCTAGCATTCAATGCTTTCATAGTGTACCTCTGGGGGCTTAAGCCTCTGGTCTACCTGATAGCAGGTTCGCTGTTGTGTATGGGACTGCACCCGATCTCGGGGCATTTTATCGCCGAACACTATATGTACCTGAGCGGGATCGAGACGTACTCGTACTACGGGCCGCTGAACTATATCACCTTTAATGTGGGCTACCACATGGAGCACCATGACTTTCCCAGCATCCCCGGCAGCCGGCTCCCTCAGatttcacatgactgggcaggagcgCAGCCACCTgtgggcccacccacttgggagacagGCCAAGCTAATCAGTgagGTGAAACAGATGGCTCCAGAGTTCTATGATGATTTACCACAGCATGACTCATGGACACGGGTGCTCTGGGACTTTGTGTTTTGTGATTCGCTTGGACCTTACTCCAGAATTAAACGCACCTTCCCATTGGCTAAGCA

Function

NR:

description
sphingolipid delta(4)-desaturase/C4-monooxygenase DES2-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617593.2 False 1814 mRNA 0.48 3 16079630 16088410
XM_036989796.1 False 1748 mRNA 0.48 4 16079630 16088437
XM_036989797.1 True 1296 mRNA 0.53 4 16080230 16088416

Neighbor

gene id symbol gene type direction distance location
LOC110533417 snrpd2 coding downstream 11522 16065251 ~ 16068108 (-)
LOC110534856 LOC106603798 coding downstream 21769 16018538 ~ 16057861 (-)
sar1a sar1a coding downstream 580494 15491003 ~ 15499136 (-)
LOC110533385 LOC106603813 coding downstream 890748 15187394 ~ 15188882 (-)
LOC110534908 LOC106603812 coding downstream 908435 15157675 ~ 15171195 (-)
LOC110533420 LOC106603794 coding upstream 5478 16093915 ~ 16117060 (-)
LOC110533421 LOC106603793 coding upstream 52881 16141284 ~ 16185730 (-)
gramd1ba LOC106603792 coding upstream 98017 16186454 ~ 16332213 (-)
LOC110533423 LOC106567546 coding upstream 275128 16363563 ~ 16485767 (-)
smfn rexo2 coding upstream 475828 16564265 ~ 16580513 (-)
G859035 NA non-coding downstream 31698 15993303 ~ 16047932 (-)
G859002 NA non-coding downstream 159760 15914990 ~ 15919870 (-)
G858963 NA non-coding downstream 178905 15869536 ~ 15900725 (-)
G858945 NA non-coding downstream 236003 15842681 ~ 15843627 (-)
G858928 NA non-coding downstream 258429 15820458 ~ 15821201 (-)
G859272 NA non-coding upstream 33010 16121447 ~ 16125648 (-)
G859274 NA non-coding upstream 37254 16125691 ~ 16126188 (-)
G859277 NA non-coding upstream 41844 16130281 ~ 16130514 (-)
G859284 NA non-coding upstream 42668 16131105 ~ 16131351 (-)
G859285 NA non-coding upstream 43217 16131654 ~ 16131960 (-)
G858015 NA other downstream 961601 15117422 ~ 15118029 (-)
LOC110533380 LOC106603823 other downstream 1506726 14557109 ~ 14794250 (-)
G856863 LOC106603829 other downstream 1869248 14203533 ~ 14210382 (-)
G859594 NA other upstream 368111 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 1433824 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 2313058 18401495 ~ 18405409 (-)
G862927 NA other upstream 2936905 19025342 ~ 19027578 (-)

Expression


Co-expression Network