LOC110533420 (LOC106603794)


Basic Information

Item Value
gene id LOC110533420
gene name LOC106603794
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 16093915 ~ 16117060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989799.1
ATCAAAACAGAAAagttgggaggagagagagagaacgagagagggaggaaagcttAACAGACAAACAATGAGCGACAGACAccgggggagaagagaaggacagacatacagagagaatAAACGGGTGGACAGACTGAGTGAGTTGAGGATTTTCAGAGCCAGTGAGCTGGAAAAGAGAAGTGGACAACCACTGTGCCCCTGAAAAGAGTGCATGAAGAAGGTAGGGAGGAGGGCTgtgaagacagaaggagagagagagaggtgagttggAGGGTCTGCAAAAGGTTGAGGGACCGAAATATCTCATGGACCGTGGACAGTTCTGTAACTGTAGTGAGATTTGAGGAGACCATAAAACATGTACCTGTGGTACAGAGTAGTGTATGTTTTAGCTTGACCACATACAGTTCTAGAAAATGGAGATACAATTCTGTGAAAGAGGTGGAATATTTTGAACTTTGAAGTTTTAGAAGGACGGAAGAATTGACGTATGAGGTGGACGGGAGACGGAGATTACAAAGCAAAAAGTCACTTGGAGGAAAAAATTGAGACAATCTTTTTTACACATTAACACAATCCTCCATCTACTGTAATATTGCAGACACTGCAtttggacagaaggagagagagagaaagaaggagagggagagaagggacgCACCAAAAAAGGGCTGGAGTTAGAGTCGGAGTAACTGCATGCTTAACAGACACTGTAGAGTCACGGGGAGAGAAGAATAAGggggcggagagacagagagacagagagacagacagacagacagacagacagagggacagacagacagacagacaaagtgacagacagacagtggaacaTTTCAGCTGGTGTAAGCCCCCAGCagtcacacacaaccacacccccccacacacacaaacacaaatacacacactgtacagagtGAAGGACTGACAGATGACAGGGGAGTTGCAAGGGGCACAGAGCAAGGATAGccggatcgagagagagagagggagggaaaaagagagagtgacagagacagggaagaagagagagagcggggaggcACTGTAAACTACAGGAAGCCCCGGTGTGAAACAAACAGGGGACAGTGGCTAGAAGTGCTCCACTCCAGAACCAGCCACCAGTCTCCATGGACTCCAGGGAGTTGCAGCACCGCTGAACCCAGGCCCTCCTCTGCTGAACAGCATGTCGGCGGGCCCGGGACCTCGTGACTCAGACCTACTGCTGTTGGAACTCCAGGCCCCAGGGCCGGTTGGACTGCAGACACTGTTGGACCTGCTAGTGGGGGTGTACCAAGAGTTCCACTCGTTACCCCTTGCCAGGGAGAAGTACGTCTCGAGCTTCCTACAATGGGCGGAGCCCCTGGTGAGGCAGGTGAAGAAGACACGCATCAAGAGGGATGACTTCCATATCTTGAAGGTGATTGGTCGAGGGACCTTCAGTGAGGTGGCTGTGGCGAGGATGCGTAGCACACAGCAAGTGTACGCGCTGAAGATTATGAATAAGTGGGACATGCTGAAGCGAGGAGagACAGCTTGTtaccaggaggagagagaggttctGCTGAAGGGTGATCGAAGGTGGATCACAGAGCTGCACTATGCCTTCCAGGACGACAATTACCTGtacctgGTGATGGACTACTACGTGGGTGGTGACCTGTTGACCCTGCTCAGTAAGTTTGGCGACCGTATCCCTGAGGACATGGCCCAGTTCTACTTGGCTGAGATGGTCATGGCGATCGACTCCATCCACAGGATGGGCTATGTTCACAGGGACATCAAACCTGACAACATCATGCTGACGGCGGAGGGCCACGTCAGGCTGGGGGACTTTGGTTCCTGTCTGAGGGTCCAGGAGGATGGCATGGTGTACTCTTCCCTGGCGGTGGGCACACCCGACTACCTGTCCCCAGAGATCCTGCGTgcggtggagggagggggaggctaCGGCCCTGAGTGTGACTGGTGGGCCCTGGGGATCTGTGCCTATGAGATGCTGCAGGGGACCACACCCTTCTACGCAGACTCCATCTCTGAGACCTACGCCAAGATCATGAACTTCCAGGAGCACTTTGAGTTCCCCCCGTCTGGCCCCGAGGTTTCAGATGAGGCCCGTTCCCTCATCATGGGGCTAATCTGTGAGAGGGGGGATCGTATGGGGGCCAGGGGTTCTGGGGACTTCAGAGCCCACCCCTTCTTCTGTGGACTAGACTGGGGCTCCCTGCATGAACTTCCAGCACCCTTCCAACCTGAAGTCTCCAACGCCACTGACACCTCCAACTTTGATGTGTTGGATGACTGCCTCAGTGAAATGGAAACACTGAGTGATGTTATGGACAAGGCCCCTATCGGAGTTCACCTGGCTTTCGTTGGCTACTCCTACACAGCTACAAGacagacaggtgcctTGGATCGCAGTCGTGACATCATGATGGAGATTGACCACCAGCGACACCTTGGGTTGCCAAGCTTCAATTTCCAGGATAAGCTTAGTCAGATGTGGCAGCTCAGAGATGTCCTGACCACGCCTGACAACCTGCCTGCCCTGCTTGAGCTCCCCCTAGCCTTGGAGCAGGGTACTGCAGAGTCGACTCACACCacaacagaggaggaagaggaggagaacgaCCAGAATTCAGTACTTGATGAGGATCTGCATAGGCGGCTGCAAGAGGCagagaagaggaatggagagctggagaaagagatggagagactgagaggggagATCCAGGGCCTGAAGTCCCCCAAGGAGACAGGCAAGGGACCCAGCActcatccctcctcatctcctcttcaaAAAAACCTCATACTTGAATCATTGCCTGTTCTATCATCATTCCTTGGGTTTCTTTTCCAACCATTTTGAACTTTTGACCTGAAGGTTGTGTCGTGTTCATAAAAGTACACAACTGAAAAATTGTAAAactgttttgcaacggaaaactaaaatgagcttttcttattGGAAGAATCCAGCTAGTCCCTCCCTTTTTCAAAACATTTTCATACATTTGATGCcttatgaacacaaccctggaaTTGTGTAGCAGCATTACCTCATCCTATAGACATCTATAAGTGCTATAGTATCTCTTCACAGGCAACAGTGTCTAACAACACAAATGTGATATGGTAGGATTTCCAGACCATATGAGCCACATACTGTGAAAAAATAGTGTTTCATAGCAGGAGCACCAAGCAGCATCTGCTTATGTTGGAGCCCTTGGCCAGAACAGAACAATAAATATCCCCTCTAAGAATAGGCCTGGTATGCAGCCATTGGCCCTCCCTCTCTATAAATCAATACAGTGTAATGAGACTTTTAAAGATGCAGTGTTTGGGGGTCTCCTTCAGGGTAGGTTTctaatggatggatgtgtggatggaggGCTGGATGCATTCAGTCCCTTAGAGGACTCCAACTCCCAGAACGCACCAAATGACAGGCGCTGTTGACAAGCAGATAACCAGGACCGGCGAGCTTGTTTAAAGGGGAAACAACATTGTTAAtgaaataataaacatatttACGTACTATACTTTTAAAAAGTTGCCAAGAAATACTGGCAAAGCCTCACGCCCTTTCCAATCACTCCAttttcatcacattctctctttctctctctcacttccacaCACCCATTCACTCACGCAATCACTGCTGCTGAAATTGTTtgcgtttttgttgttgttgtgacttTCACAGCTGGCTCGTCAGCAGTGCACCCACCCAAAAACAGTTTCCTGCAAAAGTGCAGCTACTCAGtcctgggccacgttcagtaggcaaACATTGAGGAATGCTGCAGATAGAAATGTTATGCGGAATAGAACTCCCAGCTATTTGGCTCCTTGGAAGTTGTGTAAACATACGTTTTTGGTTTCCtattggttctgggaacgaagTCATATGTTTCCTGACAGGTAAAACTGAATGTTTTTAAAGCATTCTGAGAACGGAAATAAACAatttgcctgttctgggaatgttcattTTTGGGTtgtagggaggttctgagaacgttttactactTTCCCTGAAAGATTTCATTAAAGTTCTGAGAACGGAAATTATACGTTATTTCAAGGTAATTAAATAATATTCTGAGAagatgtttcaataagacttttaataacactgttTTGAACTTCAAGTACAGATAGCAAAttcatttccatgtgtcctaaggcattaatcatgcaaacacatgtaTTTTTATTGTGGCTCAGCATCAGTGAATTTGAACCgatgatcttctgttctctatccatggcattagtccactgcgccaccaggatggagctagcatgccatgttcattttagtctattcaaacataccccatttcaaaggaaacaagcactcatcaAGATCAgatgtggccaattagtgggcgtggCCAACACACCTGAGCATACAAGATAGAGGATATAGTTTTGTTGATGCTCAGAGCAGAACGTATATGTGTTTAAACTTTTTTTGAAtgttactaatgttttcttgtCATTTATATGGAATGTTTTCctgatgttctgagaacatgactttaaatagaaccatgaggaaacccgTAGAAATTGTTATGCTGATGTACAGAAATTCCCACCTAAGAAATATATGGTTCTCAGAaagttatgtgctagctgggtatcgtgcaccattcccagaatgtTGTGGGAAGGTTTTCTGCAAAATAACAATAGGaaaaccacgctctcaccaagcgcTAAGAAACATACcgtatggttctcagaacataaTGTGCTAGCTGGGCTGACACGATAGAGCTAATCCTCAATTCTGGGTGACAGACAATCATATCTGTTCTACACAATATATTTATATCTGAACATTCCTGTAACTTTTCACCCTCCTGAACAGGCCCCTGCTCTCTTGGGCtaggtttcccaaaagcattgtAGGACTAAGATCATCATTCGTCCCTTTAGTTTCAATGGAATTAAAATGATCTTAGTGCTACGATGCTTTTAGGAAACCCAGCCTTGGGCTGTTCTAATGTACCTCTCTCTTCTCCAATCACAGAACTGCGTGTCTGCCCGTCGTCTCTTTCTCTGCCTGCACACTGTCTGGACGATGGGAAGAAATCGCCCCCTGCCTGTCACTACCCGCTGGTGATCCCTCTCCACCGCCACCTGCTGCTGTTTCACAGGatgcGCTGGCCACAGCAGAGAAGTGAGTCCTACTTGTTGGTGTGTGCGGAGGGGGGAGATCTCCAAGCCTGGGACAGACACTGCTGTACTGAGATctcctgaacccccccccccctctttgtttAGCTACCTCCCCCTCTTGGGATCGAGGGGCGACCCAGATGTGTCACCCCCTACGCTACAGCTGCTCCCTTCCCCCAAACACCCCCTCGGCTAACAGGACAGGAGCACCACATGGCTGGAGGGATGAAGGGTGGGGATGAAATGGGCTTAACGTGAAGTGGACAGAACACACTGGAGTGGCAGCAGCATGATGCTACTCTGCATCCACCACAGAGTCCTATTACAGTACCTCTGAAGGAGAGAGTTTTGAGCTAGTATGGTGGACGGGCGTTAAAGCGAATGCTATACTCATTGCACTTGTCCCATTTATAGAATTAAGAGTGAGCAGAGTGCTGGGCATGAATGGGGTAACGGGGAACATGGAGCAGTGGGATAACCATAGGAAAGCTAAGGACTGTCACTAGCTTAAAATGAATGGGGAGGTATAGAAAATGTTAATGAAGGACATCTCCTCCTGGACTACTAATAGATGCCTGTTGCTTTCCGAGTGTCGCTATGTGGGCACTTATATCTCTGAGCGGACTGAGGTAAAAGCAAGCTCTGACAACAAGAAGACACCACAGCAAAGAGACATTGCTGGTTTAAGTGACAGCCAGAGGGGACAATCAGTCCACTCCATAAGCACACACTCTCCAGCACACCTGGACATTATTGGTGCATTTTGTCCAATATTATTGTGGTACAAATGTTCAGTCATTAATTTTTAACAGCATCATCTAGTGGTTTACTTTGTATATATACATGTAAGAGTGGATTGTGTTGAATGTGAGAGGTATTCGTTGCACTACAGGCTTTGATGAAAGCATGCTATTAGATGGGCCTGTTTGGAATACATAGATGACATCTACAGAACAATACCAAGCAAATGTTGACTGAAGGCTAAGGACAGAGAGATCGGAGGTTGGTGTGTTTTACGATTTCTGGGATTGCAAGGTTACACTTTAAGGTTGCACTTAGCTCAGGTCCAGGGCTTGCTGATGCTGAGCCTTCCTACATCAAGGCTGTGTAGGATGTAGGAAGGCTCTGCGTCAGCAAGCCGCATGTAAAGCCTTGAACCAGTGCTAGGATAGGTGatgtacagtttaagtcggaagtttacatacaccttagccaaacatttaatcctagtaaaaagtcactgttttaggtcagttaggatcaccaatttattttaagaatgtgaaatgt
>XM_036989800.1
ATCAAAACAGAAAagttgggaggagagagagagaacgagagagggaggaaagcttAACAGACAAACAATGAGCGACAGACAccgggggagaagagaaggacagacatacagagagaatAAACGGGTGGACAGACTGAGTGAGTTGAGGATTTTCAGAGCCAGTGAGCTGGAAAAGAGAAGTGGACAACCACTGTGCCCCTGAAAAGAGTGCATGAAGAAGGTAGGGAGGAGGGCTgtgaagacagaaggagagagagagaggtgagttggAGGGTCTGCAAAAGGTTGAGGGACCGAAATATCTCATGGACCGTGGACAGTTCTGTAACTGTAGTGAGATTTGAGGAGACCATAAAACATGTACCTGTGGTACAGAGTAGTGTATGTTTTAGCTTGACCACATACAGTTCTAGAAAATGGAGATACAATTCTGTGAAAGAGGTGGAATATTTTGAACTTTGAAGTTTTAGAAGGACGGAAGAATTGACGTATGAGGTGGACGGGAGACGGAGATTACAAAGCAAAAAGTCACTTGGAGGAAAAAATTGAGACAATCTTTTTTACACATTAACACAATCCTCCATCTACTGTAATATTGCAGACACTGCAtttggacagaaggagagagagagaaagaaggagagggagagaagggacgCACCAAAAAAGGGCTGGAGTTAGAGTCGGAGTAACTGCATGCTTAACAGACACTGTAGAGTCACGGGGAGAGAAGAATAAGggggcggagagacagagagacagagagacagacagacagacagacagacagagggacagacagacagacagacaaagtgacagacagacagtggaacaTTTCAGCTGGTGTAAGCCCCCAGCagtcacacacaaccacacccccccacacacacaaacacaaatacacacactgtacagagtGAAGGACTGACAGATGACAGGGGAGTTGCAAGGGGCACAGAGCAAGGATAGccggatcgagagagagagagggagggaaaaagagagagtgacagagacagggaagaagagagagagcggggaggcACTGTAAACTACAGGAAGCCCCGGTGTGAAACAAACAGGGGACAGTGGCTAGAAGTGCTCCACTCCAGAACCAGCCACCAGTCTCCATGGACTCCAGGGAGTTGCAGCACCGCTGAACCCAGGCCCTCCTCTGCTGAACAGCATGTCGGCGGGCCCGGGACCTCGTGACTCAGACCTACTGCTGTTGGAACTCCAGGCCCCAGGGCCGGTTGGACTGCAGACACTGTTGGACCTGCTAGTGGGGGTGTACCAAGAGTTCCACTCGTTACCCCTTGCCAGGGAGAAGTACGTCTCGAGCTTCCTACAATGGGCGGAGCCCCTGGTGAGGCAGGTGAAGAAGACACGCATCAAGAGGGATGACTTCCATATCTTGAAGGTGATTGGTCGAGGGACCTTCAGTGAGGTGGCTGTGGCGAGGATGCGTAGCACACAGCAAGTGTACGCGCTGAAGATTATGAATAAGTGGGACATGCTGAAGCGAGGAGagACAGCTTGTtaccaggaggagagagaggttctGCTGAAGGGTGATCGAAGGTGGATCACAGAGCTGCACTATGCCTTCCAGGACGACAATTACCTGtacctgGTGATGGACTACTACGTGGGTGGTGACCTGTTGACCCTGCTCAGTAAGTTTGGCGACCGTATCCCTGAGGACATGGCCCAGTTCTACTTGGCTGAGATGGTCATGGCGATCGACTCCATCCACAGGATGGGCTATGTTCACAGGGACATCAAACCTGACAACATCATGCTGACGGCGGAGGGCCACGTCAGGCTGGGGGACTTTGGTTCCTGTCTGAGGGTCCAGGAGGATGGCATGGTGTACTCTTCCCTGGCGGTGGGCACACCCGACTACCTGTCCCCAGAGATCCTGCGTgcggtggagggagggggaggctaCGGCCCTGAGTGTGACTGGTGGGCCCTGGGGATCTGTGCCTATGAGATGCTGCAGGGGACCACACCCTTCTACGCAGACTCCATCTCTGAGACCTACGCCAAGATCATGAACTTCCAGGAGCACTTTGAGTTCCCCCCGTCTGGCCCCGAGGTTTCAGATGAGGCCCGTTCCCTCATCATGGGGCTAATCTGTGAGAGGGGGGATCGTATGGGGGCCAGGGGTTCTGGGGACTTCAGAGCCCACCCCTTCTTCTGTGGACTAGACTGGGGCTCCCTGCATGAACTTCCAGCACCCTTCCAACCTGAAGTCTCCAACGCCACTGACACCTCCAACTTTGATGTGTTGGATGACTGCCTCAGTGAAATGGAAACACTGAGTGATGTTATGGACAAGGCCCCTATCGGAGTTCACCTGGCTTTCGTTGGCTACTCCTACACAGCTACAAGacagacaggtgcctTGGATCGCAGTCGTGACATCATGATGGAGATTGACCACCAGCGACACCTTGGGTTGCCAAGCTTCAATTTCCAGGATAAGCTTAGTCAGATGTGGCAGCTCAGAGATGTCCTGACCACGCCTGACAACCTGCCTGCCCTGCTTGAGCTCCCCCTAGCCTTGGAGCAGGGTACTGCAGAGTCGACTCACACCacaacagaggaggaagaggaggagaacgaCCAGAATTCAGTACTTGATGAGGATCTGCATAGGTTAGATCACTtctgagtgagacagacagatacatataTAAAAAATTTTGGTAaccttttttaacctttatttaaccaggcaagtcaattaagaacatgttttatttacaatgacggcctaccaagaggcaaaaaataaaaaacttagacaaaacacacatcacgaaaAGACACACGACAacaatacataaagagagacctaagacaacaacataacatggcagcagcaccaCATGGCAGAAGGACAAACATTGTTAGGCACACACAGGTAGATATGGGGCCTATGCTTTTATTTCAGTTTTGCTCTACTGCTAAAATGAGTCTTCCTCACCTTTTCCTTTCATACTTGACAGACTCAGCAGACAAATGGGTTGCTTTGCAAaagtttttactattttgttgcattacaacctgtaatttaaatggatttttatttggatttcatgtaatggacatacacaaaatagtccaaactgGTGATgcgaaatttaaaaaatgacttgtttcaaaaaattctctctcaaaaaaatggaaaagtggtgcgtgccaATTCCCCCCCCTCTGCTACGAATTCCCTAAGTAAGATCTGGTGCAggcaattaccttcagaagtcacataattagttaaataaagtccacctgtgtgcaatctaagtgtcacatgatctgtcacatgatcttagTATATACacatctgttctgaaaggccccagagtttgcaacaccactaagcaaggggcaccaccaagcaagtggcaccatgaagccCACGGAGCTCAACAAAcatgtcagggacaaagttgtggagaagtacagatctgggttgggttacaaaaaaatatcagaaactttaaacatc

Function

NR:

description
PREDICTED: myotonin-protein kinase-like isoform X3

GO: NA

KEGG:

id description
K08788 DMPK; dystrophia myotonica-protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989799.1 False 6492 mRNA 0.47 14 16093915 16117060
XM_036989800.1 True 3526 mRNA 0.49 11 16100440 16117060

Neighbor

gene id symbol gene type direction distance location
LOC110533418 LOC106603795 coding downstream 5478 16079630 ~ 16088437 (-)
LOC110533417 snrpd2 coding downstream 25807 16065251 ~ 16068108 (-)
LOC110534856 LOC106603798 coding downstream 36054 16018538 ~ 16057861 (-)
sar1a sar1a coding downstream 594779 15491003 ~ 15499136 (-)
LOC110533385 LOC106603813 coding downstream 905033 15187394 ~ 15188882 (-)
LOC110533421 LOC106603793 coding upstream 24258 16141284 ~ 16185730 (-)
gramd1ba LOC106603792 coding upstream 69394 16186454 ~ 16332213 (-)
LOC110533423 LOC106567546 coding upstream 246505 16363563 ~ 16485767 (-)
smfn rexo2 coding upstream 447205 16564265 ~ 16580513 (-)
kirrel3a kirrel3 coding upstream 539981 16657041 ~ 16929386 (-)
G859035 NA non-coding downstream 45983 15993303 ~ 16047932 (-)
G859002 NA non-coding downstream 174045 15914990 ~ 15919870 (-)
G858963 NA non-coding downstream 193190 15869536 ~ 15900725 (-)
G858945 NA non-coding downstream 250288 15842681 ~ 15843627 (-)
G858928 NA non-coding downstream 272714 15820458 ~ 15821201 (-)
G859272 NA non-coding upstream 4387 16121447 ~ 16125648 (-)
G859274 NA non-coding upstream 8631 16125691 ~ 16126188 (-)
G859277 NA non-coding upstream 13221 16130281 ~ 16130514 (-)
G859284 NA non-coding upstream 14045 16131105 ~ 16131351 (-)
G859285 NA non-coding upstream 14594 16131654 ~ 16131960 (-)
G858015 NA other downstream 975886 15117422 ~ 15118029 (-)
LOC110533380 LOC106603823 other downstream 1521011 14557109 ~ 14794250 (-)
G856863 LOC106603829 other downstream 1883533 14203533 ~ 14210382 (-)
G859594 NA other upstream 339488 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 1405201 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 2284435 18401495 ~ 18405409 (-)
G862927 NA other upstream 2908282 19025342 ~ 19027578 (-)

Expression


Co-expression Network