LOC110533421 (LOC106603793)


Basic Information

Item Value
gene id LOC110533421
gene name LOC106603793
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 16141284 ~ 16185730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617598.2
GCCTGGTGCTCAGTGCCCTCTCCCTCGGGGTCTCGGTCTCAGGACGCCCGGCATGGGGCGATGTACAGCCGGCCTGGCCCGTTCCGGAGACAACCAACTGTGCGTCAGACGACTTTAGTTATAGGCGCCATACGGTGATGTCCATAACGCAGAGATTACAACAGCATTGGCAACCTAACAGAGCAGTCTACAGTGTACTCCATGTGGTCTGATGGCATCTCTGGAGCAGCAGGTTGGGGAGCTGAGGATGGATACAGAGGATAATGCGGTGGAGGCCTCTACTGAGCTGATGGACATTCGGCCCAGCTCAGGGGAATTCTTCGTGGCCAATCGGGAAGGACAGCCAGAATCCGGGTCCCGCCCCAcagtccccctctccttctcggCCCCCTACCCCTCCCTGGAAGGCATCACCGAGGGGGAAGACAAGGCCTGGGCCTGGGACCACAGCTCAGGGCCAGGAGGAGGGCTGGATGTGGAGGGGGAGCCCACGGAGGAGGACTACCGTCAGGCCCAGCGTGTTGAGACATATATCCTGAGCCTGATCCAGCGGCGCGCCCTGTCCCCTCGGCCCTGCAAGCCCCGCACCGCCATCACCGTGGCCCGCCAGAGCAGCCTCTGCCGCAAGGACCCCCTGCCTCCACCACCCGCTGCCTCCATCCCTGagcaccacccccaccaccaccaagcCGCTGGTCCCCCTCCCTCCGAGGGTCCCCCTGCATCCTGGGCCTGCCACAGCCTGGACCAGGAGCCATACGCATGCATTGCCTTGCTCCCCAATGACTCCCCtctccaccatcaccaccctcACCCTCACTACCCCCAACCAAGGCCCAGACAGCCCTTGGCCAACACCCGCTCTGCCTCCCTGGACTCCCCCTGCAGCATACCTCCATCCCAGGGCCCAAGCAGCCACGAGCCCGACTCACCCCATCCCTTCCACCACAGCTACCCGGCCCCTCCCCCGCCCCGTTCGCCTCCCTTGCCTGACCAGCAGCTGGTCAATGCCCAGTACATCCCTGCCCAACCTCTCCGGGCCCCCACCGCCAGGGCCTCCGCACACTCCCACTCCCACAGGGGGGCCCCTGGGGGACCCAAACCCAGCCGGGGTGCCTATTCTCCAGAGAGGGGTTCTCAACAGCAGCCGGCCCCACAGCAGCTGCAGCAAGCCAAGTCTAAAGCCGCCCCCAAGAAGTGTCGCTTTagcgaggagagggaaagggagagggacaaggagagggagagagacagagagagagagcgggagcggcCAGTAGGCTCCAAGAAGCCTGGAAGACGAGCCTGCAGGTCCCAGTCTGAGAACAGCCTCAATGGGCAACGGGGTGTCCCTGAACGCAAGTACAACACGgtggagagagacgggggaggatCAGGGTCAGGAAGCGGCCGCGGAAGCCAGTCCAAGGGGAAGAGGCCCCAGCCGGGCAGCACAGGCTACCGCCGCTGGCGCTCCACCCTTGAGCTCAGCCAGGATGAAGCTGAGCAGCCTCCACAGCCGCCCCCAGCTGACCAGGGGTCCAGGCGCACCCGCAAACCCcggcctcctcctccaccttatGCCTACATCAACCCACACCCGCATCATCACCCCCATCTGGAGTACCTGGACCGAGAGCTCGCAACCCTGTGTTGGCCCGAGGAGTGCTACCCCCACCCTGGGCAGGGCGAGTCCGAGTCGAGCCTGAGTGAAGACTCGCCGGCCTCCAGCTCGCTGTCAAGTGACTCAGATGAGAGCGGGGGTCTGGTGTGGCCCCAGCAGCTCCCCCCTCAACTCTCCTCCCCCCTGACGGCCACCGCTCCAGCTGGGGCCCCCCTGCAGCCCAAAGCCTTCGTCAAGATCAAGGCCTCCCACGCGCTCAAGAAGAAGATCCTGCGCTTCCGCACGGGCTCCCTCAAAGTCATGACCACCGTTTAGAGTGCCGCACAGGACCCGTGCTTAGTAGTTGGGGGTTAAGACAATttagtgtctctctctatatgCACCTGGTTTCCTTTGAGGAGAAGCACAGTCTGTTTTGAAGAGCCACAAGTACAGAAGACAGCAAATGTAACTCACTGCACTGCCTAACTGTACATGCATATACATAGACTCTTTGGCTTTCAATGCATCCTTCACAGGCCTCAGATCTGCCATAAACCCTCCTGAACAAGCAAACAGAGCTGAGCCTGAGCTCTAAACTATGATCCCAGAGCTGTGAAGCTTTCGGCTATTGCTTGAACCCAACCAGGCGGGGTCTGAGACAAGATAATATGCTATGGGGCTTGAGTTGGCCTtattcccctttccctccccctgACAGAGAGTACTGTGAGCATGATATGTCCCGTCTTGTGACTCAGCATCAACGTGTCTGTAGTCTAGGTTGCGTTCCAGGCCACACTACTTTGCAGACATTGTATCAACCAATGGATACATGCCATGTTATTAACTGCATAACGCAGTTGGGTATCAGACTGCTAAATcatatgtggttagctgatacgttAAACACCTATCTAGCTGTGAAATCTGACGTTGTCATATCTGGCAGGTGTATGCAATGTAGCCTGGAACGCTGCCCTCCTCTGCACATGACCACCTGTGTGGTGTGATTTACTCACTCCTGTATTTATGAATGTATTCTGTAAATAAAATGAGCTGGGACCATAGAACCTTAAGGGGACCACAGAGGTCTTGTCTCTCGACCACCGGC
>XM_021617597.2
TCTCCCTTGCAACTAGTCATACGATTTCACTGATTCCTTTTTCACTGACAATGGGTTTATAGGCGAGGTAGCCAGAGAAGGTGCTTGGATTTTCATGAAAGGCTGGTACAACGTGATCAACGCTTCACGATCCCTTGGTGTTAACTTTTAGGCATTAATGAAAGATTAATTCATTGAACTGGCTGGGTGAATGTGACCTTGAGCGTTTAGGAATACAAAGGAGAGCTCGTTGTCCAATCACATCTTGAAGAGCAGATTACTTATGAATATTAACTATTGTGGGTTCTGGGTAACCAATGGACCCTCTGAAAAACCCGGGCATGCTAATGTACAATTGACAGCTACGGAATTGGAATCCAGCAACATCATTGAGCGAGCAGTAGGTATGGGTTCGGTTCTGCATACAATGGTTCGCAGCTGTATCTATAGTTTACATTCGCTACTTCGCTTTAAAACATGTATATCAAACCAAAGAGTAAAGTCACTTTGAAATTAAATATGCAGACAAGTTAGCCTCACTTGGATACTAGTAGGAAGGAACGACCAACGGCTGAGAAACGATCAAAGAGCCAAAGAGTAAGCACTCAGCCACTCTCCGAGCAAGGGAGAACGATGTACCGAACGTTTTCTTTCCCAATGACAGCGGAGCGCAGTCGGAATAAGGAGCGCCTTGAGGCGAGTTTGGCCGGTCTGTGTGAGTTGGAGCTGCTGAAACAGAGGCAGGAATGCCTGGTGCTCAGTGCCCTCTCCCTCGGGGTCTCGGTCTCAGGACGCCCGGCATGGGGCGATGTACAGCCGGCCTGGCCCGTTCCGGAGACAACCAACTGTGCGTCAGACGACTTTAGTTATAGGCGCCATACGAGCAGTCTACAGTGTACTCCATGTGGTCTGATGGCATCTCTGGAGCAGCAGGTTGGGGAGCTGAGGATGGATACAGAGGATAATGCGGTGGAGGCCTCTACTGAGCTGATGGACATTCGGCCCAGCTCAGGGGAATTCTTCGTGGCCAATCGGGAAGGACAGCCAGAATCCGGGTCCCGCCCCAcagtccccctctccttctcggCCCCCTACCCCTCCCTGGAAGGCATCACCGAGGGGGAAGACAAGGCCTGGGCCTGGGACCACAGCTCAGGGCCAGGAGGAGGGCTGGATGTGGAGGGGGAGCCCACGGAGGAGGACTACCGTCAGGCCCAGCGTGTTGAGACATATATCCTGAGCCTGATCCAGCGGCGCGCCCTGTCCCCTCGGCCCTGCAAGCCCCGCACCGCCATCACCGTGGCCCGCCAGAGCAGCCTCTGCCGCAAGGACCCCCTGCCTCCACCACCCGCTGCCTCCATCCCTGagcaccacccccaccaccaccaagcCGCTGGTCCCCCTCCCTCCGAGGGTCCCCCTGCATCCTGGGCCTGCCACAGCCTGGACCAGGAGCCATACGCATGCATTGCCTTGCTCCCCAATGACTCCCCtctccaccatcaccaccctcACCCTCACTACCCCCAACCAAGGCCCAGACAGCCCTTGGCCAACACCCGCTCTGCCTCCCTGGACTCCCCCTGCAGCATACCTCCATCCCAGGGCCCAAGCAGCCACGAGCCCGACTCACCCCATCCCTTCCACCACAGCTACCCGGCCCCTCCCCCGCCCCGTTCGCCTCCCTTGCCTGACCAGCAGCTGGTCAATGCCCAGTACATCCCTGCCCAACCTCTCCGGGCCCCCACCGCCAGGGCCTCCGCACACTCCCACTCCCACAGGGGGGCCCCTGGGGGACCCAAACCCAGCCGGGGTGCCTATTCTCCAGAGAGGGGTTCTCAACAGCAGCCGGCCCCACAGCAGCTGCAGCAAGCCAAGTCTAAAGCCGCCCCCAAGAAGTGTCGCTTTagcgaggagagggaaagggagagggacaaggagagggagagagacagagagagagagcgggagcggcCAGTAGGCTCCAAGAAGCCTGGAAGACGAGCCTGCAGGTCCCAGTCTGAGAACAGCCTCAATGGGCAACGGGGTGTCCCTGAACGCAAGTACAACACGgtggagagagacgggggaggatCAGGGTCAGGAAGCGGCCGCGGAAGCCAGTCCAAGGGGAAGAGGCCCCAGCCGGGCAGCACAGGCTACCGCCGCTGGCGCTCCACCCTTGAGCTCAGCCAGGATGAAGCTGAGCAGCCTCCACAGCCGCCCCCAGCTGACCAGGGGTCCAGGCGCACCCGCAAACCCcggcctcctcctccaccttatGCCTACATCAACCCACACCCGCATCATCACCCCCATCTGGAGTACCTGGACCGAGAGCTCGCAACCCTGTGTTGGCCCGAGGAGTGCTACCCCCACCCTGGGCAGGGCGAGTCCGAGTCGAGCCTGAGTGAAGACTCGCCGGCCTCCAGCTCGCTGTCAAGTGACTCAGATGAGAGCGGGGGTCTGGTGTGGCCCCAGCAGCTCCCCCCTCAACTCTCCTCCCCCCTGACGGCCACCGCTCCAGCTGGGGCCCCCCTGCAGCCCAAAGCCTTCGTCAAGATCAAGGCCTCCCACGCGCTCAAGAAGAAGATCCTGCGCTTCCGCACGGGCTCCCTCAAAGTCATGACCACCGTTTAGAGTGCCGCACAGGACCCGTGCTTAGTAGTTGGGGGTTAAGACAATttagtgtctctctctatatgCACCTGGTTTCCTTTGAGGAGAAGCACAGTCTGTTTTGAAGAGCCACAAGTACAGAAGACAGCAAATGTAACTCACTGCACTGCCTAACTGTACATGCATATACATAGACTCTTTGGCTTTCAATGCATCCTTCACAGGCCTCAGATCTGCCATAAACCCTCCTGAACAAGCAAACAGAGCTGAGCCTGAGCTCTAAACTATGATCCCAGAGCTGTGAAGCTTTCGGCTATTGCTTGAACCCAACCAGGCGGGGTCTGAGACAAGATAATATGCTATGGGGCTTGAGTTGGCCTtattcccctttccctccccctgACAGAGAGTACTGTGAGCATGATATGTCCCGTCTTGTGACTCAGCATCAACGTGTCTGTAGTCTAGGTTGCGTTCCAGGCCACACTACTTTGCAGACATTGTATCAACCAATGGATACATGCCATGTTATTAACTGCATAACGCAGTTGGGTATCAGACTGCTAAATcatatgtggttagctgatacgttAAACACCTATCTAGCTGTGAAATCTGACGTTGTCATATCTGGCAGGTGTATGCAATGTAGCCTGGAACGCTGCCCTCCTCTGCACATGACCACCTGTGTGGTGTGATTTACTCACTCCTGTATTTATGAATGTATTCTGTAAATAAAATGAGCTGGGACCATAGAACCTTAAGGGGACCACAGAGGTCTTGTCTCTCGACCACCGGC
>TU979195
ATCAAGGCCTCCCACGCGCTCAAGAAGAAGATCCTGCGCTTCCGCACGGGCTCCCTCAAAGTCATGACCACCGTTTAGAGTGCCGCACAGGACCCGTGCTTAGTAGTTGGGGGTTAAGACAATttagtgtctctctctatatgCACCTGGTTTCCTTTGAGGAGAAGCACAGTCTGTTTTGAAGAGCCACAAGTACAGAAGACAGCAAATGTAACTCACTGCACTGCCTAACTGTACATGCATATACATAGACTCTTTGGCTTTCAATGCATCCTTCACAGGCCTCAGATCTGCCATAAACCCTCCTGAACAAGCAAACAGAGCTGAGCCTGAGCTCTAAACTATGATCCCAGAGCTGTGAAGCTTTCGGCTATTGCTTGAACCCAACCAGGCGGGGTCTGAGACAAGATAATATGCTATGGGGCTTGAGTTGGCCTtattcccctttccctccccctgACAGAGAGTACTGTGAGCATGATATGTCCCGTCTTGTGACTCAGCATCAACGTGTCTGTAGTCTAGGTTGCGTTCCAGGCCACACTACTTTGCAGACATTGTATCAACCAATGGATACATGCCATGTTATTAACTGCATAACGCAGTTGGGTATCAGACTGCTAAATcatatgtggttagctgatacgttAAACACCTATCTAGCTGTGAAATCTGACGTTGTCATATCTGGCAGGTGTATGCAATGTAGCCTGGAACGCTGCCCTCCTCTGCACATGACCACCTGTGTGGTGTGATTTACTCACTCCTGTATTTATGAATGTATTCTGTAAATAAAATGAGCTGGGACCATAGAACCTTAAGGGGACCACAGAGGTCTTGTCTCTCGACCACCGGCTGTCAATGTGTGTTTCATTGgacggagagagagt
>TU979193
AGACGAGCCTGCAGGTCCCAGTCTGAGAACAGCCTCAATGGGCAACGGGGTGTCCCTGAACGCAAGTACAACACGgtggagagagacgggggaggatCAGGGTCAGGAAGCGGCCGCGGAAGCCAGTCCAAGGGGAAGAGGCCCCAGCCGGGCAGCACAGGCTACCGCCGCTGGCGCTCCACCCTTGAGCTCAGCCAGGATGAAGCTGAGCAGCCTCCACAGCCGCCCCCAGCTGACCAGGGGTCCAGGCGCACCCGCAAACCCcggcctcctcctccaccttatGCCTACATCAACCCACACCCGCATCATCACCCCCATCTGGAGTACCTGGACCGAGAGCTCGCAACCCTGTGTTGGCCCGAGGAGTGCTACCCCCACCCTGGGCAGGGCGAGTCCGAGTCGAGCCTGAGTGAAGACTCGCCGGCCTCCAGCTCGCTGTCAAGTGACTCAGATGAGAGCGGGGGTCTGGTGTGGCCCCAGCAGCTCCCCCCTCAACTCTCCTCCCCCCTGACGGCCACCGCTCCAGCTGGGGCCCCCCTGCAGCCCAAAGCCTTCGTCAAGATCAAGGCCTCCCACGCGCTCAAGAAGAAGATCCTGCGCTTCCGCACGGGCTCCCTCAAAGTCATGACCACCGTTTAGAGTGCCGCACAGGACCCGTGCTTAGTAGTTGGGGGTTAAGACAATttagtgtctctctctatatgCACCTGGTTTCCTTTGAGGAGAAGCACAGTCTGTTTTGAAGAGCCACAAGTACAGAAGACAGCAAATGTAACTCACTGCACTGCCTAACTGTACATGCATATACATAGACTCTTTGGCTTTCAATGCATCCTTCACAGGCCTCAGATCTGCCATAAACCCTCCTGAACAAGCAAACAGAGCTGAGCCTGAGCTCTAAACTATGATCCCAGAGCTGTGAAGCTTTCGGCTATTGCTTGAACCCAACCAGGCGGGGTCTGAGACAAGATAATATGCTATGGGGCTTGAGTTGGCCTtattcccctttccctccccctgACAGAGAGTACTGTGAGCATGATATGTCCCGTCTTGTGACTCAGCATCAACGTGTCTGTAGTCTAGGTTGCGTTCCAGGCCACACTACTTTGCAGACATTGTATCAACCAATGGATACATGCCATGTTATTAACTGCATAACGCAGTTGGGTATCAGACTGCTAAATcatatgtggttagctgatacgttAAACACCTATCTAGCTGTGAAATCTGACGTTGTCATATCTGGCAGGTGTATGCAATGTAGCCTGGAACGCTGCCCTCCTCTGCACATGACCACCTGTGTGGTGTGATTTACTCACTCCTGTATTTATGAATGTATTCTGTAAATAAAATGAGCTGGGACCATAGAACCTTAAGGGGA
>TU979194
ATCAAGGCCTCCCACGCGCTCAAGAAGAAGATCCTGCGCTTCCGCACGGGCTCCCTCAAAGTCATGACCACCGTTTAGAGTGCCGCACAGGACCCGTGCTTAGTAGTTGGGGGTTAAGACAATttagtgtctctctctatatgCACCTGGTTTCCTTTGAGGAGAAGCACAGTCTGTTTTGAAGAGCCACAAGTACAGAAGACAGCAAATGTAACTCACTGCACTGCCTAACTGTACATGCATATACATAGACTCTTTGGCTTTCAATGCATCCTTCACAGGCCTCAGATCTGCCATAAACCCTCCTGAACAAGCAAACAGAGCTGAGCCTGAGCTCTAAACTATGATCCCAGAGCTGTGAAGCTTTCGGCTATTGCTTGAACCCAACCAGGCGGGGTCTGAGACAAGATAATATGCTATGGGGCTTGAGTTGGCCTtattcccctttccctccccctgACAGAGAGTACTGTGAGCATGATATGTCCCGTCTTGTGACTCAGCATCAACGTGTCTGTAGTCTAGGTTGCGTTCCAGGCCACACTACTTTGCAGACATTGTATCAACCAATGGATACATGCCATGTTATTAACTGCATAACGCAGTTGGGTATCAGACTGCTAAATcatatgtggttagctgatacgttAAACACCTATCTAGCTGTGAAATCTGACGTTGTCATATCTGGCAGGTGTATGCAATGTAGCCTGGAACGCTGCCCTCCTCTGCACATGACCACCTGTGTGGTGTGATTTACTCACTCCTGTATTTATGAATGTATTCTGTAAATAAAATGAGCTGGGACCATAGAACCTTAAGGGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617598.2 False 2717 mRNA 0.60 4 16141318 16185003
XM_021617597.2 False 3397 mRNA 0.57 3 16141318 16185730
TU979195 False 890 TUCP 0.48 1 16141284 16142173
TU979193 False 1390 TUCP 0.55 1 16141348 16142737
TU979194 True 826 lncRNA 0.47 1 16141348 16142173

Neighbor

gene id symbol gene type direction distance location
LOC110533420 LOC106603794 coding downstream 24258 16093915 ~ 16117060 (-)
LOC110533418 LOC106603795 coding downstream 52881 16079630 ~ 16088437 (-)
LOC110533417 snrpd2 coding downstream 73210 16065251 ~ 16068108 (-)
LOC110534856 LOC106603798 coding downstream 83457 16018538 ~ 16057861 (-)
sar1a sar1a coding downstream 642182 15491003 ~ 15499136 (-)
gramd1ba LOC106603792 coding upstream 724 16186454 ~ 16332213 (-)
LOC110533423 LOC106567546 coding upstream 177835 16363563 ~ 16485767 (-)
smfn rexo2 coding upstream 378535 16564265 ~ 16580513 (-)
kirrel3a kirrel3 coding upstream 471311 16657041 ~ 16929386 (-)
LOC118966710 LOC106583873 coding upstream 880399 17066129 ~ 17073806 (-)
G859294 NA non-coding downstream 1696 16139389 ~ 16139622 (-)
G859290 NA non-coding downstream 4977 16136121 ~ 16136341 (-)
G859285 NA non-coding downstream 9358 16131654 ~ 16131960 (-)
G859284 NA non-coding downstream 9967 16131105 ~ 16131351 (-)
G859277 NA non-coding downstream 10804 16130281 ~ 16130514 (-)
G859378 NA non-coding upstream 95253 16280983 ~ 16281296 (-)
G859419 NA non-coding upstream 161492 16347222 ~ 16347592 (-)
G859420 NA non-coding upstream 163471 16349201 ~ 16349541 (-)
G858015 NA other downstream 1023289 15117422 ~ 15118029 (-)
LOC110533380 LOC106603823 other downstream 1568414 14557109 ~ 14794250 (-)
G856863 LOC106603829 other downstream 1930936 14203533 ~ 14210382 (-)
G859594 NA other upstream 270818 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 1336531 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 2215765 18401495 ~ 18405409 (-)
G862927 NA other upstream 2839612 19025342 ~ 19027578 (-)
G863863 NA other upstream 3673340 19859070 ~ 19860611 (-)
G859297 NA non-coding upstream 4981 16147154 ~ 16147438 (-)
G856872 NA other downstream 1934068 14205272 ~ 14207216 (-)

Expression


Co-expression Network