LOC110533429 (nhlrc3)


Basic Information

Item Value
gene id LOC110533429
gene name nhlrc3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 17345391 ~ 17359625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989814.1
caagacaagtcacccatgggcatacactacccacccactggctccaggtcatctataagtttttgcaagCAATCGGAAACATCTGGCCTAAAACCAGATTACAGACTTCTTGGACGACCACTGTACAAATTGGATATCAACTGGCCCAAATATCCCGAGCTTTTCAGCGGCGAGGTATTTGGAGTGGCTGTCAACCAGTATGCCGGTGTGGTATATGTTGCACAGAGAGGTGAGACGGTTCCAAAGGTGCTGGTGTTCACAACAGACGGAGAGTTCCTACAGGCCTGGAACACGAGCACCCTGGAGATGCCCCATGGGATATTTTTGGCCGACGCCGCCACCAACCCCACCGTGTGGGTCACGGACGTAGGAAACGGCCCGTATGGTCACTCCATTAAGCAGTACTCTCCCTCGGGCAAGCTGCTCCAGGTCCTGGGCTCAATGGGGGAAGCCGGCTCTGGGGTCAACCCGCTCCAGTTTGACCAGCCCGCTGAAATCTTTGTCCACAGCTCTGGGGAGATCTACATAGTGGACGGGGACGGAGGGATTAACAACCGCCTCATCAAACTGTCCAAAGACCTGGAGGTGCAATGGATGCACGGAGAGAAGGGCCAGGGCCTTGCACAGTTCTACATCCCCCATAGTGTGGCAGTAGATAACTATCAAAGGGTGTGGGTTGCTGACAGAGGAAACAAGCGAATCCAGGTGTTTAATTCTGTGACTGGAGACTGGCTTGGAACATGGGGAAGCTGTTTCAATGAGGATGCACCCTACTCTGTCAGGTTGACACCAGACCAGAAGTACTTTGTGGTGGTGCAGCTGAACACCAATCAGATCTCCCTACTGGAGGCTCCACCTGTGGGTGTGATTGGTCAGTGCCAGGTGGTCAGTGTCATCCAATTGGCTGAAGACGTCAAGCCCCACCTAGTGGACCTGGACCTGAAGACTGGGGCTCTGTATGTGGCTGAGATTGGTGCACAGCAGGCTCAGAAGTTTACCCCATTCAGCCTGGGTACTGGCTTCCTGCAGGATGGTTGATGCACTCTATTATAGGCCGTGTTCCAGGCGGACAACATTGCAGACACATGACAGATCTCAGAACGCCTGGATTGGTGTTTAACATATCAGTTAACCACATCATATGATAGCAATCTGATGCTCGACTGTGCAGTCTATGATCTGGGCACAGAACCACTGGCTGATGCAGTGCAACGTCTGCAATGTAGTTGGCCTGGACCACGACTATAATCTTTTGATGAGAAGTTAACATGTATATTTAAATAGATTCAAATGAGCCAGGCCACTTATTGGACAAATCAAAGATGCCATTTTCTCCTCATACTGCTCATTTGAATAATTATTTACCCCAGGCTCACTAAGGTATAAAGTCCTTTGTATGTAACGTGCTACGCCAATCATTAACTCTTAGCCAGCTCCATGTTTACTGTTTAGTTCTTATGGAGGTATAGAAAAGTATTGCATGTCCAACTAACCAATCTCACTGGTCACTTACGTTAGCGGCTTGATGTTAACCAAATCTCATGATCCTGTTACTTAATTGCATGAAAGAAATGATTGTAAGAACCATAATTTGAAATTCTTTAAGGCAGCTATGTTTTAAAAGCGTCAAAGTGACTTGTGCTGTATGAGGTACTACTACTATCAAGTGAGAAACTTGTTTTCTTACTTGCAGTATGTTTGATCACAGTAATATGACCAGTGCTATTCAGATTAGATTTGAAAGGGTTCGGTGTCATCCGCTAGCATCTTTTGCCAGGGGAAGTGTTGTGATATATGAAATGTGTGGTTTAGCATTGAAAGTGTATAACATAAGCTTTCAATGCAAAGCATAACATtattatgcttgtgtgtgtgtatatggtttcATTGGGATTACAAgtcctgtatttttttgtgtttttaccCTGGGGAACAAATCTAATTTTATGGGGAAATGTTTACATTGCTTGCTCCTGAATATTGTTTATGGTCATATGCATATTTTGTTAAATTTGATTGTATGAATATACTGTGATTTGTTTCTGCTGCTTTTTATTAGTGCCATATCTTAGTCATGCTCTGCATCATtgaattttaaatgttttatgttGCTTGTTATTCTTTCATTTTCAAGGGTAAAGATTGACAGAAATAAGATCTAAATAAACTTTTTGAAAACCAA
>XM_036989813.1
GGGACTATGTTTGGGAAACCGTTATTCCCAATCCCACTTTCTCCCCATGGCCGCAACCATAGTACGATAAACGGTAATTTTGGCCATTAGGGTCGTAGCCTAAATTACATGCTTCAAACCATGACTCGACACAGTAGTTGCTACAAACCTGATCGATGTAATTTTATCTCCGGATTGAAAACCAAATCAAGCAGCCGTCGTAAACGCTTGATCTCCTCCTTTGAATTGGAAATTTCGTCCTGGTATTCTGTTATCGTTTTTTCTACTTCTACGTATATCTCCACAGCAACCGCGGTTAGTCGCTTGCAATCGGAAACATCTGGCCTAAAACCAGATTACAGACTTCTTGGACGACCACTGTACAAATTGGATATCAACTGGCCCAAATATCCCGAGCTTTTCAGCGGCGAGGTATTTGGAGTGGCTGTCAACCAGTATGCCGGTGTGGTATATGTTGCACAGAGAGGTGAGACGGTTCCAAAGGTGCTGGTGTTCACAACAGACGGAGAGTTCCTACAGGCCTGGAACACGAGCACCCTGGAGATGCCCCATGGGATATTTTTGGCCGACGCCGCCACCAACCCCACCGTGTGGGTCACGGACGTAGGAAACGGCCCGTATGGTCACTCCATTAAGCAGTACTCTCCCTCGGGCAAGCTGCTCCAGGTCCTGGGCTCAATGGGGGAAGCCGGCTCTGGGGTCAACCCGCTCCAGTTTGACCAGCCCGCTGAAATCTTTGTCCACAGCTCTGGGGAGATCTACATAGTGGACGGGGACGGAGGGATTAACAACCGCCTCATCAAACTGTCCAAAGACCTGGAGGTGCAATGGATGCACGGAGAGAAGGGCCAGGGCCTTGCACAGTTCTACATCCCCCATAGTGTGGCAGTAGATAACTATCAAAGGGTGTGGGTTGCTGACAGAGGAAACAAGCGAATCCAGGTGTTTAATTCTGTGACTGGAGACTGGCTTGGAACATGGGGAAGCTGTTTCAATGAGGATGCACCCTACTCTGTCAGGTTGACACCAGACCAGAAGTACTTTGTGGTGGTGCAGCTGAACACCAATCAGATCTCCCTACTGGAGGCTCCACCTGTGGGTGTGATTGGTCAGTGCCAGGTGGTCAGTGTCATCCAATTGGCTGAAGACGTCAAGCCCCACCTAGTGGACCTGGACCTGAAGACTGGGGCTCTGTATGTGGCTGAGATTGGTGCACAGCAGGCTCAGAAGTTTACCCCATTCAGCCTGGGTACTGGCTTCCTGCAGGATGGTTGATGCACTCTATTATAGGCCGTGTTCCAGGCGGACAACATTGCAGACACATGACAGATCTCAGAACGCCTGGATTGGTGTTTAACATATCAGTTAACCACATCATATGATAGCAATCTGATGCTCGACTGTGCAGTCTATGATCTGGGCACAGAACCACTGGCTGATGCAGTGCAACGTCTGCAATGTAGTTGGCCTGGACCACGACTATAATCTTTTGATGAGAAGTTAACATGTATATTTAAATAGATTCAAATGAGCCAGGCCACTTATTGGACAAATCAAAGATGCCATTTTCTCCTCATACTGCTCATTTGAATAATTATTTACCCCAGGCTCACTAAGGTATAAAGTCCTTTGTATGTAACGTGCTACGCCAATCATTAACTCTTAGCCAGCTCCATGTTTACTGTTTAGTTCTTATGGAGGTATAGAAAAGTATTGCATGTCCAACTAACCAATCTCACTGGTCACTTACGTTAGCGGCTTGATGTTAACCAAATCTCATGATCCTGTTACTTAATTGCATGAAAGAAATGATTGTAAGAACCATAATTTGAAATTCTTTAAGGCAGCTATGTTTTAAAAGCGTCAAAGTGACTTGTGCTGTATGAGGTACTACTACTATCAAGTGAGAAACTTGTTTTCTTACTTGCAGTATGTTTGATCACAGTAATATGACCAGTGCTATTCAGATTAGATTTGAAAGGGTTCGGTGTCATCCGCTAGCATCTTTTGCCAGGGGAAGTGTTGTGATATATGAAATGTGTGGTTTAGCATTGAAAGTGTATAACATAAGCTTTCAATGCAAAGCATAACATtattatgcttgtgtgtgtgtatatggtttcATTGGGATTACAAgtcctgtatttttttgtgtttttaccCTGGGGAACAAATCTAATTTTATGGGGAAATGTTTACATTGCTTGCTCCTGAATATTGTTTATGGTCATATGCATATTTTGTTAAATTTGATTGTATGAATATACTGTGATTTGTTTCTGCTGCTTTTTATTAGTGCCATATCTTAGTCATGCTCTGCATCATtgaattttaaatgttttatgttGCTTGTTATTCTTTCATTTTCAAGGGTAAAGATTGACAGAAATAAGATCTAAATAAACTTTTTGAAAACCAA
>XM_021617624.2
CacttctagctagtagactggctACGTATGGAGAAAAAAAACCTCTCAGACAAAATGTACCCAAGACCACGTGACCTCAACCACGAACATCGTCATGTGATCAAAATAGGAAGTGGCGTTAGTCTTTTCGTCTGATTCAAAGGTGCTAGGTTGGGTGGAAGCGCCCGATATATTTGATTGTTAACCTTCAAGGTTTCCCCATGAAAAGACGAAATCATTTGTGTTTAATAGTGACGACCATGGGGACACTTTTTCTGCTTATGGTGGTATTATATGGTTCAATAAATTCACAGCAATCGGAAACATCTGGCCTAAAACCAGATTACAGACTTCTTGGACGACCACTGTACAAATTGGATATCAACTGGCCCAAATATCCCGAGCTTTTCAGCGGCGAGGTATTTGGAGTGGCTGTCAACCAGTATGCCGGTGTGGTATATGTTGCACAGAGAGGTGAGACGGTTCCAAAGGTGCTGGTGTTCACAACAGACGGAGAGTTCCTACAGGCCTGGAACACGAGCACCCTGGAGATGCCCCATGGGATATTTTTGGCCGACGCCGCCACCAACCCCACCGTGTGGGTCACGGACGTAGGAAACGGCCCGTATGGTCACTCCATTAAGCAGTACTCTCCCTCGGGCAAGCTGCTCCAGGTCCTGGGCTCAATGGGGGAAGCCGGCTCTGGGGTCAACCCGCTCCAGTTTGACCAGCCCGCTGAAATCTTTGTCCACAGCTCTGGGGAGATCTACATAGTGGACGGGGACGGAGGGATTAACAACCGCCTCATCAAACTGTCCAAAGACCTGGAGGTGCAATGGATGCACGGAGAGAAGGGCCAGGGCCTTGCACAGTTCTACATCCCCCATAGTGTGGCAGTAGATAACTATCAAAGGGTGTGGGTTGCTGACAGAGGAAACAAGCGAATCCAGGTGTTTAATTCTGTGACTGGAGACTGGCTTGGAACATGGGGAAGCTGTTTCAATGAGGATGCACCCTACTCTGTCAGGTTGACACCAGACCAGAAGTACTTTGTGGTGGTGCAGCTGAACACCAATCAGATCTCCCTACTGGAGGCTCCACCTGTGGGTGTGATTGGTCAGTGCCAGGTGGTCAGTGTCATCCAATTGGCTGAAGACGTCAAGCCCCACCTAGTGGACCTGGACCTGAAGACTGGGGCTCTGTATGTGGCTGAGATTGGTGCACAGCAGGCTCAGAAGTTTACCCCATTCAGCCTGGGTACTGGCTTCCTGCAGGATGGTTGATGCACTCTATTATAGGCCGTGTTCCAGGCGGACAACATTGCAGACACATGACAGATCTCAGAACGCCTGGATTGGTGTTTAACATATCAGTTAACCACATCATATGATAGCAATCTGATGCTCGACTGTGCAGTCTATGATCTGGGCACAGAACCACTGGCTGATGCAGTGCAACGTCTGCAATGTAGTTGGCCTGGACCACGACTATAATCTTTTGATGAGAAGTTAACATGTATATTTAAATAGATTCAAATGAGCCAGGCCACTTATTGGACAAATCAAAGATGCCATTTTCTCCTCATACTGCTCATTTGAATAATTATTTACCCCAGGCTCACTAAGGTATAAAGTCCTTTGTATGTAACGTGCTACGCCAATCATTAACTCTTAGCCAGCTCCATGTTTACTGTTTAGTTCTTATGGAGGTATAGAAAAGTATTGCATGTCCAACTAACCAATCTCACTGGTCACTTACGTTAGCGGCTTGATGTTAACCAAATCTCATGATCCTGTTACTTAATTGCATGAAAGAAATGATTGTAAGAACCATAATTTGAAATTCTTTAAGGCAGCTATGTTTTAAAAGCGTCAAAGTGACTTGTGCTGTATGAGGTACTACTACTATCAAGTGAGAAACTTGTTTTCTTACTTGCAGTATGTTTGATCACAGTAATATGACCAGTGCTATTCAGATTAGATTTGAAAGGGTTCGGTGTCATCCGCTAGCATCTTTTGCCAGGGGAAGTGTTGTGATATATGAAATGTGTGGTTTAGCATTGAAAGTGTATAACATAAGCTTTCAATGCAAAGCATAACATtattatgcttgtgtgtgtgtatatggtttcATTGGGATTACAAgtcctgtatttttttgtgtttttaccCTGGGGAACAAATCTAATTTTATGGGGAAATGTTTACATTGCTTGCTCCTGAATATTGTTTATGGTCATATGCATATTTTGTTAAATTTGATTGTATGAATATACTGTGATTTGTTTCTGCTGCTTTTTATTAGTGCCATATCTTAGTCATGCTCTGCATCATtgaattttaaatgttttatgttGCTTGTTATTCTTTCATTTTCAAGGGTAAAGATTGACAGAAATAAGATCTAAATAAACTTTTTGAAAACCAA

Function

symbol description
nhlrc3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be located in azurophil granule lumen and extracellular region.

NR:

description
NHL repeat-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989814.1 False 2182 mRNA 0.45 8 17345391 17359625
XM_036989813.1 False 2419 mRNA 0.44 7 17349741 17359625
XM_021617624.2 True 2406 mRNA 0.44 7 17350112 17359625

Neighbor

gene id symbol gene type direction distance location
smtlb LOC100196589 coding upstream 168520 17173809 ~ 17176871 (+)
LOC110533419 LOC106603797 coding upstream 1266697 16066398 ~ 16078694 (+)
LOC110533415 LOC106603804 coding upstream 1351416 15681212 ~ 15993975 (+)
LOC110533414 LOC106603806 coding upstream 1678840 15663485 ~ 15666551 (+)
sytl2a sytl2 coding upstream 1683142 15615709 ~ 15662249 (+)
emsy LOC106603772 coding downstream 3060 17362685 ~ 17395892 (+)
klhl35 klhl35 coding downstream 83290 17442915 ~ 17454534 (+)
LOC110533433 NA coding downstream 121445 17481070 ~ 17486740 (+)
rasa4 LOC106603777 coding downstream 193359 17552984 ~ 17623058 (+)
clip2 LOC106603778 coding downstream 270493 17630118 ~ 17695513 (+)
G860576 NA non-coding upstream 5408 17338646 ~ 17339983 (+)
G860573 NA non-coding upstream 12523 17332506 ~ 17332868 (+)
G860481 NA non-coding upstream 21389 17323101 ~ 17324002 (+)
G860480 NA non-coding upstream 84725 17260279 ~ 17260666 (+)
G860514 NA non-coding upstream 175486 17169587 ~ 17169905 (+)
G860603 NA non-coding downstream 41776 17401401 ~ 17401803 (+)
G860606 NA non-coding downstream 45434 17405059 ~ 17405333 (+)
G860607 NA non-coding downstream 46438 17406063 ~ 17406360 (+)
G860769 NA non-coding downstream 47587 17407212 ~ 17407413 (+)
G860798 NA non-coding downstream 63435 17423060 ~ 17423562 (+)
G860570 NA other upstream 18462 17326240 ~ 17326929 (+)
G860453 NA other upstream 242924 17101915 ~ 17102467 (+)
G858416 NA other upstream 1466699 15874029 ~ 15878692 (+)
G858203 NA other upstream 1818584 15526389 ~ 15526807 (+)
G858148 NA other upstream 1910643 15414440 ~ 15434748 (+)
G860846 NA other downstream 135987 17495612 ~ 17499171 (+)
cenatac ccdc84 other downstream 1701689 19057354 ~ 19068272 (+)
G863286 NA other downstream 2056719 19416344 ~ 19416851 (+)
LOC110533458 LOC106603734 other downstream 2155904 19515297 ~ 19524114 (+)
LOC110533468 NA other downstream 2503689 19862577 ~ 19890299 (+)

Expression


Co-expression Network