si:ch211-209a2.2 (LOC106603750)


Basic Information

Item Value
gene id si:ch211-209a2.2
gene name LOC106603750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 18959903 ~ 18975879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989834.1
TTCTACGTCACGTGACGGGTGGGAACTTTCGAACCCGGGAAactattcatttattttttatgttagTGAGTAATTTAATTATTTTGAACCCCAGACAGGCCCTGTAGTGGTTTTGCCTCTCAATAAAAGTGTATATTGCGAAAGCTTAGTAATTCGCCACCATGGGTATTTATCAATCAAAAGGAAAGATCCCTGAAGAAGTTTACAGATTTTGGTCAGCTGTGGCATCATCCATCCGTCTGGGATGGTTGGGGACTGATGATATGGCAAAGGGAGCTGATGTGTCTGTGTCAGACGGACATGGGAGGACACCTCTCCACCTGGCTGCTGGTGAGGGGGATGTCGAGACTGTCCGATTCCTGCTGAAGAAGGGAGCGGATGTCAACGTTAGGGATTTTGCGAGAGAAACTGCTCTCCGAGATGGCATTCGCTGCAAGAGCATAGAGGTTGTGTCCCAACTGATGAGTGAGGGGGCTCATCTGGAGACATCCTCTCTGGAACTGGGGGttgagatgtgttgCCTTGCGTTCTTGGGAGACTTCAAGCAGATGGAGGTGTGGAAGCAGGCAGGGGTTAGCTTCAACTTTGCTGATGCCGATGGCAGAACTCCTCTGCATGTGGCTGTCTGCACTAACCAGCCAGACATGGTCAGGTTCTGCATCAGGAACGGCTCCAGTCTTGAGCAGCGCGACCTCTTCAACAACCAGCCGGTGGATGATGCTCGGCGTCTGGGTCTGCAAACCCTGGTGGAGATGCTGAGCAATGaggcccagaaggaagcctcCGACCTCGTGGCCGAGAAAACCAAGATCAATGTGGAGGAGCAGATGGCCAGAGGCCTGGTAGAACTCTCCCTGGTCCCATAACATGGACACAATTAGCCCCATTATCCTTATCTAGTACCTAATTATCGAGTTTTGTTCACTCTTTTTCATTTTACAACTCATTTGTCTCCTACTGAAATGCTTCAAGTCAAAATTGATAAATGTTGAGAATTATATTTTGCTGTTTGCCCacgttaattgtatttttatggtTGATAATAGTTGTGAATGTTATGACTCTCATCAGTATTTTAATGAACAAGTCCGTTGACTTTTGTTTACAGTAAAAAGCAGCATAACT
>XM_021617651.2
CCCATACAGACGACAAACATGAAACATTCAATTAATGTAAATGATAATACTTGCATTTGTAAACACTTTGAATGATATGTTCATGAGGTTACGTTAATGATGTTCATTACAATACGTTCAACAAGTTTGATATGCATGTTCTACGTCACGTGACGGGTGGGAACTTTCGAACCCGGGAAactattcatttattttttatgttagTGAGTAATTTAATTATTTTGAACCCCAGACAGGCCCTGTAGTGGTTTTGCCTCTCAATAAAAGTGTATATTGCGAAAGCTTAGTAATTCGCCACCATGGGTATTTATCAATCAAAAGGAAAGATCCCTGAAGAAGTTTACAGATTTTGGTCAGCTGTGGCATCATCCATCCGTCTGGGATGGTTGGGGACTGATGATATGGCAAAGGAGATGAAGGTGTGCCAGCTTGCCATTTTCCCCATGCTGTTGAATGCCTCTGCTTTGCAAGGAGACATTGTTGGTCTTGAGGGACACTTACAACAGGGAGCTGATGTGTCTGTGTCAGACGGACATGGGAGGACACCTCTCCACCTGGCTGCTGGTGAGGGGGATGTCGAGACTGTCCGATTCCTGCTGAAGAAGGGAGCGGATGTCAACGTTAGGGATTTTGCGAGAGAAACTGCTCTCCGAGATGGCATTCGCTGCAAGAGCATAGAGGTTGTGTCCCAACTGATGAGTGAGGGGGCTCATCTGGAGACATCCTCTCTGGAACTGGGGGttgagatgtgttgCCTTGCGTTCTTGGGAGACTTCAAGCAGATGGAGGTGTGGAAGCAGGCAGGGGTTAGCTTCAACTTTGCTGATGCCGATGGCAGAACTCCTCTGCATGTGGCTGTCTGCACTAACCAGCCAGACATGGTCAGGTTCTGCATCAGGAACGGCTCCAGTCTTGAGCAGCGCGACCTCTTCAACAACCAGCCGGTGGATGATGCTCGGCGTCTGGGTCTGCAAACCCTGGTGGAGATGCTGAGCAATGaggcccagaaggaagcctcCGACCTCGTGGCCGAGAAAACCAAGATCAATGTGGAGGAGCAGATGGCCAGAGGCCTGGTAGAACTCTCCCTGGTCCCATAACATGGACACAATTAGCCCCATTATCCTTATCTAGTACCTAATTATCGAGTTTTGTTCACTCTTTTTCATTTTACAACTCATTTGTCTCCTACTGAAATGCTTCAAGTCAAAATTGATAAATGTTGAGAATTATATTTTGCTGTTTGCCCacgttaattgtatttttatggtTGATAATAGTTGTGAATGTTATGACTCTCATCAGTATTTTAATGAACAAGTCCGTTGACTTTTGTTTACAGTAAAAAGCAGCATAACT

Function

NR:

description
L-asparaginase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989834.1 False 1125 mRNA 0.47 6 18959903 18975741
XM_021617651.2 True 1359 mRNA 0.45 7 18959903 18975879

Neighbor

gene id symbol gene type direction distance location
rad51d rad51d coding downstream 337203 18611075 ~ 18622700 (-)
LOC110533434 LOC106603775 coding downstream 1414281 17520259 ~ 17545622 (-)
LOC118936917 klhl35 coding downstream 1466372 17492108 ~ 17493531 (-)
LOC110533431 LOC106603773 coding downstream 1521420 17429250 ~ 17438483 (-)
dcps dcps coding downstream 1635881 17314602 ~ 17324022 (-)
rcc1l rcc1l coding upstream 32353 19008232 ~ 19022135 (-)
ncf1 spd2b coding upstream 48016 19023895 ~ 19040794 (-)
LOC110533448 LOC106603743 coding upstream 90359 19066238 ~ 19162147 (-)
arhgef12b LOC106603740 coding upstream 228474 19204353 ~ 19319028 (-)
tlcd5b LOC106603741 coding upstream 344574 19320453 ~ 19323825 (-)
G862899 NA non-coding downstream 1973 18954689 ~ 18957930 (-)
G862784 NA non-coding downstream 157568 18801191 ~ 18802335 (-)
G862696 NA non-coding downstream 290900 18662281 ~ 18669003 (-)
G862637 NA non-coding downstream 430397 18529288 ~ 18529506 (-)
G862634 NA non-coding downstream 435224 18524473 ~ 18524679 (-)
G862924 NA non-coding upstream 27915 19003794 ~ 19005833 (-)
G862925 NA non-coding upstream 30335 19006214 ~ 19006459 (-)
G862928 NA non-coding upstream 47350 19023229 ~ 19029881 (-)
G862931 NA non-coding upstream 60793 19036672 ~ 19038702 (-)
G862934 NA non-coding upstream 66110 19041989 ~ 19042213 (-)
G862071 tmem132e other downstream 554494 18401495 ~ 18405409 (-)
G859594 NA other downstream 2503056 16456548 ~ 16456847 (-)
LOC110533421 LOC106603793 other downstream 2817166 16141284 ~ 16185730 (-)
LOC110534856 LOC106603798 other downstream 2922080 16018538 ~ 16057861 (-)
G862927 NA other upstream 49463 19025342 ~ 19027578 (-)
G863863 NA other upstream 883191 19859070 ~ 19860611 (-)
G865899 cssa04h11orf63 other upstream 2715884 21691763 ~ 21693197 (-)
G865988 LOC106578276 other upstream 2783245 21759124 ~ 21759852 (-)
G866654 NA other upstream 2843232 21819111 ~ 21823621 (-)

Expression

si:ch211-209a2.2(LOC106603750) Expression in all Baseline Samples

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si:ch211-209a2.2(LOC106603750) Expression in each Bioproject

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si:ch211-209a2.2(LOC106603750) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network