XLOC_002745


Basic Information

Item Value
gene id XLOC_002745
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22481158 ~ 22491458 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005093
ACAGCAGAAACGTGTTCGGTATGGAGTAACAGTAGTGTGCTAACAGGaacatacaattacaaaaaaaaaaaaaaacattatgcaaCTTCAAAATGCACATTGCGGATGCAAACGTTTTCAGGTCTGGTGTTGGTTTTGATGGTGTTCGTTTGTTTGGTCTCTCCGCTGCGCCCCATCTGTGACCTGAGGGTTCTGGACCACTTCGTTCGAGAAGCTGGAGATTCAGAAGTCATCATGcgAGGCTGCAGAGGAGGCTGTGGAGTGATGAAATCCTACTTTGTTCCTCTGACAAGAGTTGACTTTGCTGTTTGGGAACATATAGATGTTCAGATGCAGGCCGTGGAGGTCCAGACAGGACTGTCTGTGCTACTTCAGGCACTTAATACGGCCAGGAAAACAGTCAGCAACTCTTCACTATTAAACACACTAGAAAACAACATCAGTAACCTCCACAGTCTGGGCCAGATCATACGCAGCCTCCATTTACAGCAGGCCGAGTCCACAGTTCTTCCAGATGATTCAGCTCCTGCCAGCTCACAGACGCAGGAGGTCTCGTCTCTCCCAGAACTTCTGCAGGTGCAGAGCAGCTTCCTGAGAGGAAAAGTCCGACTCCTGCTTTCAGCTGCTCCAGCCTGCCAACGGCAAAACAGCTGATACCAGATAACCGCCACAAGCTGGACCACAACACTTGATGGAGACATGATACTCCGGCTTGAATCTTAGTTTAACCCTAAAGGagaatcatttactcacccgcaTGTTGCTCCAAAGACTTTTATTCATCTACAGGACCCAAATGAAGATATGTTGAATTAATTCTGAGGGTGCGTTCACACTTGTAAATGCTTTTTGTTCTGGCTGTGGTTcactttcacatggcaaagtttctaaaaaGACCAAAATAGTTGAAACAAGTCACAAGCAGGTAAAATCtgctcacattggtcagagtttggtTTATTTTCCAGGATTCCGCACGGCTGCTATACGTCGTTACTGTAATTtttgttgatgacaaattaatTGGTGTGCTTTAATTCTGAATGGTGACACTTACAGACatttgtttccatccaaagatgccaattaaatttatgtgcaaaacaggAATATCTCATAAAAGACACGTGAAtaaagctgcgtttccatccaatgagccaaagagaacaaaatcgtcacttcctgattaactggcgccaaatatcaacggtaaaaacggaatttgccgcggtaggagaagctgtgtgaatcttttctttaataCAATGAGTGAGCGCAGTGGTGTTTATGGGCGTGAGCcgcagagcacagacgctcttaacAATTCTGGAGGTCAATAATAAtacaacactaatactgaaatggttatggccttttaaaatgaccaaaataacattttagatgttttatagtgtgctcagcctgctggtttgtccattcacacacatttttatcatcacatgatctctaatACCaacatcacatgacttttttcagtgcacatactggaatttgtttgataaaagtgtttccattgtagtttatgctaatcttttcttatagaataaaaagtttaacCGACTCAGTTATTCACATACATTTATTATGCACTAATTATTATACAGTATTTTCAAAACTTATGGGCATTATGGCATTACAATCAaccatttattatatgcatatccaaaatgtgcataaaaataggtggatggaagcaTAGCTAGTGTCACcgaatataaatcagaggtaagactttctcatacatagccttGTTTCAATTGTGAAGGGTTGTAAAAAATATATCGATATCGATATCAGGTCGAGTTAGACAGCATTCTTTTACTGTAGTATTCAACATAAAAAGCACTTTAACCAGTACGACTGATATCTTGGACAAAGAGACTTTGAGTGGAAGAACAGActaaaatttgattaaaataatgtTCATTTGGGTTTCAAagattaacacattttttattatttttttggcttcgTAACGACATTAGGGTGAGTAATTTAGGAGTTTTAATTTTGGCATGAACTAACCTCTTAAAAAGGAGATGAACTGAGAAATTTGCTTGATCTTTTGAAACATAAGAGGTCAGCGcagtttcagaactcaaaatgTCTAAAAACAGCTTACATTGATGACAAACAGCCAAAACATCAAGTTGTTGAATTTTCGGATGATGCTGTGCCAGCTATACTGGAGCGGATAGTCACATCACACCACACAATGATTTTATTACATGTCCATCTATAAAGGATGAAGTATGAACGatgtcaaaatattttattacttctaaaacatttcatttcctctaaacaggggcggactggccatctggcaattttGGCAAATGCTagaagggctggaccattttttaaatgtgggccggcatgctattttctatatatatatttttataagtattgcttttacatgcaggcagcttttgtctcttgcaagatgtggaatataatgatgatgatgatgatattagtaataataataataaatgttttgcattggcccaatcggcaatggcCGGCTGGTtttgagatgggccgacccaatcagaggttacgcggccataatcaaaatctggcaagaatgtcaaaaaaACAGTGAGTGCAACACAAGCTacttgtcagagatggaccgtaaaaaaggaaaggcggtgccGAAAAGCTCAAAGAAAGCAAATgatgccaaatgcataaaattaactgaaatagtctTGAAAGGGGGCAGAGCAATGGGTagcgctgtctcctcacagcaagaaggtcaatggttcgagcctcggctgggtcagttggtgtttctgtgtggagtttgcatgttcgcgtgatTTTCCTcccagtttccctcacaagtccaatcacaaaataaatatttattacatatggtactgtttatattatttccccatctgtacaccaataaaaGTAGTTAATGTGCATGTCCatggatggggctgtgtcggtgtggtaatgtgggctggtttGGCTATATTGCCAGGggtgatttttagtcccagtccacCCTTGCTTCTAAATAAGCTTTCTAATGTACAAATCATCTTAACATCATGAGTAGACCTCATAGAACAGtacaaaacaactgaaaaaaaagtcAGTTCAAGAGCCCTTTAAAGAGCTGGGTGTCATTTGTTTAGAAATCTAGAAGCCTGCAGTTGTGTTTCTAAAGTATGCATCATTTGAGGAGTGAAGCAAAGCGGTAGTGACACCATGACATATTCAGCAAGATAAACATGTCAGAAGAACCTGCACAGGACCACATTAGAGCACACAAGTGGACATGTCGCAGGCTCAAAATCTCATAGCGGTGTCTGCCAGACAAGATGTTCGCGGCTACATGGACTACCACACACCAGAGATACTTTTAATTTCCACGAATTGCTGCTATTTGttcgttttgttttatttactacaGGACACATGCCTTTTTCTGAGTCCTTTATCGTACATCTAACGGCAGGACCAAAGATCTTTTTAGGGTTCAGCAGAGTTCATCATGCAGCCTCAACAAAGTCACTATAAGATATGCTTCCATCTAGAGGACAAACCTGGAAGTTTGACTGAAACTGTAATACTTAGACACCCTTTTGAAAGAAAGAAACAGGCCTGTCAGTATATGTTTAATAACCTTTTTAATGTTGTCCAGTTCAGATACACAACATACAGTGTGTAGTAGCCTGTATAGGAAACAGAAATATGAATTTCAATCTTTCGACCCATTGCGGTCATACAGTCCCCACATCTCAAGCCTTTTTTTAACGTTGCTgaaattcaataaaatgaaactCAAC
>TCONS_00005094
ATGCAAACGTTTTCAGGTCTGGTGTTGGTTTTGATGGTGTTCGTTTGTTTGGTCTCTCCGCTGCGCCCCATCTGTGACCTGAGGGTTCTGGACCACTTCGTTCGAGAAGCTGGAGATTCAGAAGTCATCATGGTGAGGCCCGAACACACTTCACACCAAATGTCATATTATTTTCAGAAACATATcatctgtttttctctctctcagcgAGGCTGCAGAGGAGGCTGTGGAGTGATGAAATCCTACTTTGTTCCTCTGACAAGAGTTGACTTTGCTGTTTGGGAACATATAGATGTTCAGATGCAGGCCGTGGAGGTCCAGACAGGACTGTCTGTGCTACTTCAGGCACTTAATACGGCCAGGAAAACAGTCAGCAACTCTTCACTATTAAACACACTAGAAAACAACATCAGTAACCTCCACAGTCTGGGCCAGATCATACGCAGCCTCCATTTACAGCAGGCCGAGTCCACAGTTCTTCCAGATGATTCAGCTCCTGCCAGCTCACAGACGCAGGAGGTCTCGTCTCTCCCAGAACTTCTGCAGGTGCAGAGCAGCTTCCTGAGAGGAAAAGTCCGACTCCTGCTTTCAGCTGCTCCAGCCTGCCAACGGCAAAACAGCTGA

Function

GO:

id name namespace
GO:0048753 pigment granule organization biological_process
GO:0007517 muscle organ development biological_process
GO:0050931 pigment cell differentiation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0032438 melanosome organization biological_process
GO:0043473 pigmentation biological_process
GO:0061061 muscle structure development biological_process
GO:0032502 developmental process biological_process
GO:0048066 developmental pigmentation biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0033059 cellular pigmentation biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0048770 pigment granule cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0042470 melanosome cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-141216-428 Predicted to enable cytokine activity. Predicted to be involved in nucleate erythrocyte development. Predicted to act upstream of or within erythrocyte maturation. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); diabetic angiopathy; familial erythrocytosis 5; ischemia (multiple); and neurodegenerative disease (multiple). Orthologous to human EPO (erythropoietin).

Ensembl:

ensembl_id ENSDARG00000100737

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005093 False 3836 lncRNA 0.40 5 22481158 22491458
TCONS_00005094 True 624 mRNA 0.50 4 22484340 22491353

Neighbor

gene id symbol gene type direction distance location
XLOC_002744 BX005194.1 coding downstream 209255 22271789 ~ 22271903 (-)
XLOC_002743 fgf11b coding downstream 231714 22161585 ~ 22249444 (-)
XLOC_002742 cldn7b coding downstream 330739 22144768 ~ 22150419 (-)
XLOC_002741 ponzr2 coding downstream 353216 22123831 ~ 22127942 (-)
XLOC_002740 si:ch73-111e15.1 coding downstream 364037 22110842 ~ 22117121 (-)
XLOC_002746 CT573337.1 coding upstream 3368 22494826 ~ 22497980 (-)
XLOC_002747 zgc:172339 coding upstream 10305 22501763 ~ 22506044 (-)
XLOC_002748 NA coding upstream 39327 22530785 ~ 22534924 (-)
XLOC_002749 NA coding upstream 62891 22554349 ~ 22567208 (-)
XLOC_002750 NA coding upstream 112815 22604273 ~ 22607715 (-)
XLOC_002732 NA non-coding downstream 637295 21646154 ~ 21843863 (-)
XLOC_002731 NA non-coding downstream 831430 21627807 ~ 21649728 (-)
XLOC_002730 BX957322.2 non-coding downstream 907701 21570196 ~ 21573457 (-)
XLOC_002725 BX004800.2 non-coding downstream 1572602 20908442 ~ 20908556 (-)
XLOC_002751 AL807389.3 non-coding upstream 260774 22752232 ~ 22752348 (-)
XLOC_002761 NA non-coding upstream 1021664 23513122 ~ 23519215 (-)

Expression


Co-expression Network