LOC110533486 (LOC105011036)


Basic Information

Item Value
gene id LOC110533486
gene name LOC105011036
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 20872783 ~ 20877037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617745.2
CCCTTTTCTTTTCATTATCCACTCAGGGTCGGGGGGACACGTGTAGCGAGTTTGATTGACAGCGTCAGTGGGCGTTTACTAACTTGGTTAATTTGGGTAACATCCTTCTTTCTATTTACAAGTTCACTCACTGGCACCAAGTCTTGGTTGACAAATTCaattaaattgattaaatatgtttCTGGCCAAAAGACTCATTGGTGGCATTCTTGATGTTGTAAGCAATATTGATCCAGCTGCTTTTGTGCCCTCTGACCCACCTGCACCACGAAGGCCACTTGCGTATGCAGAGCAGAGTGAGAGTGACGAGGAAAGACAGTTTCGCAAAGTCTTCCAGCAGTTGGCTGGAGATGACATGGAGGTGAGTCCCATCGAACTGATGAACATCCTGAATAGAATTATTTCCAAACATGGTGACTTGAAGACAGACGGGTTTAGCATAGAGTCCTGCAGGAGCATGGTGGCAGTCATGGATAGTGACAGCACTGGAAAGCTTGGATTTCATGAGTTCAAACACCTTTGGAACAATATCAAGAAATGGCAGggTGTGTATAAGACTTATGACACTGATGGCTCTGGGGTTATTGGTGTAGATGAGCTTCCCAACGCTTTCAGGGTTGCAGGCTTCCGCCTCAACGACCAGTTGTTCCAGATGATCATCCGCAGGTACAGCGAAGAGAATGGGGACCTGGACTTTGACAACTACATTGGCTGTCTTGTGAGACTGGATGCTATGTGTCGTGCCTTCAACACCTTAGACAAGGATAACAATGGAACCATCAAGGTCAACGTTCAAGAGTGGCTCCAGTTGACCATGTATTCCTGAGCTTAGGACATGCCTACAGGTGTTTACAAAACCCCTCCATTTCTATCTACTTGATGCTGTGCCAGTCCCCCAGTGTATGCAGGTTTCCATACATTATTTGCAACCTACACAATGTGAATACAGCTTTTTCATACAACAAAAGGGGAGTTGTAGACTAACATGGGAACTAAAACCTGCACACACAGTGGTTCTATGGGCTGACACTGAGAACCTCTGGGCCACTCGATGCTGGTCTTGCATTCAACCAAGAGTATCTGCTTGTTTTCCTTTTGAATTGAAGAAAAGACAGCATTCGCCTTTGTAGAGGTTCTTAGCTCTCAAAAGGTAATAATTTACCAATCATTTTTAAGCCAGTTCTGAAATAGTCTATAACTGTGACACATACATGGTGTCGCTACACATAATGCCAGCACAATGTTAGTTTTTGCCATTGCTGCATGAAACCAACAGATGCCATTTAAGGATTTGGTAACTGTTGCCATAAGTCACTGAACTGTTAGTCTTTGAAATGACCAGTGTAATTTTGTATGGAATTAAAGTAATCCTAACAATG
>XM_021617746.2
GTCCTCATGTGTCAACACTGAGTCATTAGCCTACACTGTTAGGTTTCCGTTATTCTTGAGATTGCCATATGCTTTCGATTATGGGTTGACAAATTCaattaaattgattaaatatgtttCTGGCCAAAAGACTCATTGGTGGCATTCTTGATGTTGTAAGCAATATTGATCCAGCTGCTTTTGTGCCCTCTGACCCACCTGCACCACGAAGGCCACTTGCGTATGCAGAGCAGAGTGAGAGTGACGAGGAAAGACAGTTTCGCAAAGTCTTCCAGCAGTTGGCTGGAGATGACATGGAGGTGAGTCCCATCGAACTGATGAACATCCTGAATAGAATTATTTCCAAACATGGTGACTTGAAGACAGACGGGTTTAGCATAGAGTCCTGCAGGAGCATGGTGGCAGTCATGGATAGTGACAGCACTGGAAAGCTTGGATTTCATGAGTTCAAACACCTTTGGAACAATATCAAGAAATGGCAGggTGTGTATAAGACTTATGACACTGATGGCTCTGGGGTTATTGGTGTAGATGAGCTTCCCAACGCTTTCAGGGTTGCAGGCTTCCGCCTCAACGACCAGTTGTTCCAGATGATCATCCGCAGGTACAGCGAAGAGAATGGGGACCTGGACTTTGACAACTACATTGGCTGTCTTGTGAGACTGGATGCTATGTGTCGTGCCTTCAACACCTTAGACAAGGATAACAATGGAACCATCAAGGTCAACGTTCAAGAGTGGCTCCAGTTGACCATGTATTCCTGAGCTTAGGACATGCCTACAGGTGTTTACAAAACCCCTCCATTTCTATCTACTTGATGCTGTGCCAGTCCCCCAGTGTATGCAGGTTTCCATACATTATTTGCAACCTACACAATGTGAATACAGCTTTTTCATACAACAAAAGGGGAGTTGTAGACTAACATGGGAACTAAAACCTGCACACACAGTGGTTCTATGGGCTGACACTGAGAACCTCTGGGCCACTCGATGCTGGTCTTGCATTCAACCAAGAGTATCTGCTTGTTTTCCTTTTGAATTGAAGAAAAGACAGCATTCGCCTTTGTAGAGGTTCTTAGCTCTCAAAAGGTAATAATTTACCAATCATTTTTAAGCCAGTTCTGAAATAGTCTATAACTGTGACACATACATGGTGTCGCTACACATAATGCCAGCACAATGTTAGTTTTTGCCATTGCTGCATGAAACCAACAGATGCCATTTAAGGATTTGGTAACTGTTGCCATAAGTCACTGAACTGTTAGTCTTTGAAATGACCAGTGTAATTTTGTATGGAATTAAAGTAATCCTAACAATG

Function

NR:

description
calpain small subunit 1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08583 CAPNS1, CAPN4; calpain, small subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617745.2 False 1379 mRNA 0.44 11 20872783 20877037
XM_021617746.2 True 1317 mRNA 0.43 11 20873431 20877037
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110533484 LOC106603702 coding upstream 9062 20834046 ~ 20863721 (+)
kptn kptn coding upstream 39579 20822791 ~ 20833204 (+)
h3f3c LOC101073377 coding upstream 74310 20794407 ~ 20798473 (+)
LOC110533480 plekhb1 coding upstream 79461 20775913 ~ 20793322 (+)
LOC110533475 LOC106603711 coding upstream 251184 20604609 ~ 20621599 (+)
zgc:153990 LOC106603701 coding downstream 428 20877465 ~ 20883905 (+)
LOC110533488 LOC106603699 coding downstream 39572 20916609 ~ 20923158 (+)
LOC110533489 LOC106603698 coding downstream 59666 20936703 ~ 20941840 (+)
LOC110533490 LOC106603696 coding downstream 76168 20953205 ~ 20977269 (+)
mark4a LOC106603692 coding downstream 133166 21010203 ~ 21062899 (+)
G864484 NA non-coding upstream 23495 20848789 ~ 20849288 (+)
G864369 LOC106603709 non-coding upstream 227836 20641130 ~ 20644947 (+)
G864348 NA non-coding upstream 276609 20591464 ~ 20596174 (+)
G864325 NA non-coding upstream 332162 20539376 ~ 20540621 (+)
G864246 NA non-coding upstream 387875 20479751 ~ 20484908 (+)
G864516 NA non-coding downstream 55223 20932260 ~ 20932467 (+)
G864517 NA non-coding downstream 55514 20932551 ~ 20932770 (+)
G864521 NA non-coding downstream 68342 20945379 ~ 20949594 (+)
G864528 NA non-coding downstream 86280 20963317 ~ 20965086 (+)
G864219 NA other upstream 521218 20340382 ~ 20351565 (+)
LOC110534862 LOC106603719 other upstream 565540 20120958 ~ 20307243 (+)
LOC110533468 NA other upstream 1003909 19862577 ~ 19890299 (+)
LOC110533458 LOC106603734 other upstream 1355450 19515297 ~ 19524114 (+)
G863286 NA other upstream 1455932 19416344 ~ 19416851 (+)
G864566 NA other downstream 193776 21070813 ~ 21083881 (+)
LOC110533503 LOC106603655 other downstream 608462 21444502 ~ 21488968 (+)
LOC110533510 LOC106603660 other downstream 730118 21607155 ~ 21654144 (+)
ncapd3 ncapd3 other downstream 2460851 23316281 ~ 23349337 (+)
LOC110533527 LOC106603676 other downstream 2868142 23561844 ~ 23762824 (+)

Expression

LOC110533486(LOC105011036) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110533486(LOC105011036) Expression in each Bioproject

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LOC110533486(LOC105011036) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network