LOC110533514 (opcml)


Basic Information

Item Value
gene id LOC110533514
gene name opcml
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 22221614 ~ 22567266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617799.2
TATGATCTTGATAAATAAGGATACAAAACTGATTTTAGAGCATACTTGTTTCTAGAGTCACTGCAGTGTTGTGCTGTATCGGGAGAACTACCCAAGTGGAGACTTTGCTGATGCATCTTTGCGCGAGCATCCATCTCTTGGCGATTACAAATAACATACACAAAGCTGGGGAGACGGTCTACGTCAGCTTTCAGAAAACACACATCGCTTTTTTCCTCTGAAGCTTGTTGTAGCTGGAAATTTCTTGGAGATAGGTTACTAGAGGCACAGATATAGCTTACTTTTTGATATTCTCACCTTATAGTTGAGGCAAGCAAATAGAGGTCGACCACCAACCACAACAGCATTTCGAGTGGAGTTGAATTTCTGTGGGCATCACTATTTCGCACGGAGCAAGGAGTATTTGACATTCAAGTTTTTGTGGAAGTTGCGCACTGACGGAAAATGGGCATTTGTGGTTATTTTGTGGCGCCTTGGAAATGCCTTGTTGTCATCGGTGTAAGACTGTTATTCCTTGTACCTGCAGGAGTGCCAGCGAGGAGCGGGGATTCTTTTTCTAAGGACAACATCACTGTCAGACAAGGGGACAGTGCCGTCTTAAAATGTACTGTGGATAGCAAGGTATCGCGGGTGGCTTGGCTCAACCGCACCACCATTCTCTACGCGGGGGCTGACAAGTGGTCTCTGGACCCTCGAGTGGTCCGAATGGACAACACACCCGTGACAGAGTACAGCATAAAGATCCAGAATGTGAATGTACACGACGAGGGGCCCTACGTGTGCTCCATCCTCACAAGCAACAAACCCAAATCATCCAAAGTGCATCTCATCGTTCAAGTACCTGCGAAGATCACAAACATATCGACGGACATCACAGTGAACGAGGGCAGCAATGTAACTCTCATGTGTCTGGCCATTGGACGACCAGAGCCTAACATCATATGGAAACATCGCTCTGCAAAAGGACACAAATTTGTCACTGAAGGGGAATATGTTGATATGACAGCGATCACTAAAGAACAGTCGGGATCGTATGAATGCATCTCCTCCAATGACATCTCAGCCCCAGATGTGAAGACAGTGAAAGTCACAGTCAATTATGCTCCCTTCATTTTGAAGGCTGGGAGTACAGGTACCCCAGTGGGCCAAAAAGGGGTGCTCCAATGTGAGGCCTCTGCTGTTCCTGGTGCAGATTTTGAGTGGTACAAAGAGGACCGCAGACTCCTAAATGGACTGAATGGGATTAAGATAGAGAACCAAGGTAAACAATCCATGCTTATGTTTTTGAATGTTTCTGAAGAGGACTATGGAAACTACACGTGTGTGGCCATGAACACCATGGGGATCACCAATGCAAGCATAATCCTCTATGGTCCCGGGACTATGATGCATGATGTGAACAGGGCTGCCCTGTCGACCCACTGCTCCTTTTGCCTCCTGCTGACTGTTTTCTTGTTGTTCCTGCTCAAGTTTTGATGCAACACGGTTCATCCTCAGCTTTACTCAGCACTGAACAACAACAAGACTCTTGGTCCCAGAAGAAGAAAAGTAACAAAAGGAACTACCAATAACATCGTTGGTTCAcccttcttctttttttttggtGTGCATTGGCGGTATGTCTTCATTTGGACAAAAACCAGAAGACGGGACACGTCTAGGgtggtggggagggagagggtcgACATGGATGCTGATCTGAGGTGATGGTAGTACTACAGAGTTTGTGTCAATCTAAACTTTTATATGTAAAAAAGGGAAACAAAAAGTTCATGTATGTGTTGATAGTTGACTGGTTTTACCCAAATATTGAGGTGTACATTCGGATTACTGGTGTGTCATGTCCTGTTTGATCTCTGTACAATAACATAAGTTTTTCTTAagtaaacaacaaaaaaatgaaaacataCATTGTGATTGTTGAATTTACTGTATTTTTACAGTTGTATGCAACAGAATAATAACAAAAACAGACCATTCAATATAAACAATGTCAACTTCAGTGTAACATAGTGTGCTATCATTTCTGAGGCAGAAcaatacaatataaaatattTATGGAATTTTTGTCACAAATGAAGTCCAAGCACTGCAAAACAAACATgattaaaacataaaaaata
>XM_036989918.1
GTTTATGATCTTGATAAATAAGGATACAAAACTGATTTTAGAGCATACTTGTTTCTAGAGTCACTGCAGTGTTGTGCTGTATCGGGAGAACTACCCAAGTGGAGACTTTGCTGATGCATCTTTGCGCGAGCATCCATCTCTTGGCGATTACAAATAACATACACAAAGCTGGGGAGACGGTCTACGTCAGCTTTCAGAAAACACACATCGCTTTTTTCCTCTGAAGCTTGTTGTAGCTGGAAATTTCTTGGAGATAGGTTACTAGAGGCACAGATATAGCTTACTTTTTGATATTCTCACCTTATAGTTGAGGCAAGCAAATAGAGGTCGACCACCAACCACAACAGCATTTCGAGTGGAGTTGAATTTCTGTGGGCATCACTATTTCGCACGGAGCAAGGAGTATTTGACATTCAAGTTTTTGTGGAAGTTGCGCACTGACGGAAAATGGGCATTTGTGGTTATTTTGTGGCGCCTTGGAAATGCCTTGTTGTCATCGGTGTAAGACTGTTATTCCTTGTACCTGCAGGAGTGCCAGCGAGGAGCGGGGATTCTTTTTCTAAGGACAACATCACTGTCAGACAAGGGGACAGTGCCGTCTTAAAATGTACTGTGGATAGCAAGGTATCGCGGGTGGCTTGGCTCAACCGCACCACCATTCTCTACGCGGGGGCTGACAAGTGGTCTCTGGACCCTCGAGTGGTCCGAATGGACAACACACCCGTGACAGAGTACAGCATAAAGATCCAGAATGTGAATGTACACGACGAGGGGCCCTACGTGTGCTCCATCCTCACAAGCAACAAACCCAAATCATCCAAAGTGCATCTCATCGTTCAAGGACACAAATTTGTCACTGAAGGGGAATATGTTGATATGACAGCGATCACTAAAGAACAGTCGGGATCGTATGAATGCATCTCCTCCAATGACATCTCAGCCCCAGATGTGAAGACAGTGAAAGTCACAGTCAATTATGCTCCCTTCATTTTGAAGGCTGGGAGTACAGGTACCCCAGTGGGCCAAAAAGGGGTGCTCCAATGTGAGGCCTCTGCTGTTCCTGGTGCAGATTTTGAGTGGTACAAAGAGGACCGCAGACTCCTAAATGGACTGAATGGGATTAAGATAGAGAACCAAGGTAAACAATCCATGCTTATGTTTTTGAATGTTTCTGAAGAGGACTATGGAAACTACACGTGTGTGGCCATGAACACCATGGGGATCACCAATGCAAGCATAATCCTCTATGGTCCCGGGACTATGATGCATGATGTGAACAGGGCTGCCCTGTCGACCCACTGCTCCTTTTGCCTCCTGCTGACTGTTTTCTTGTTGTTCCTGCTCAAGTTTTGATGCAACACGGTTCATCCTCAGCTTTACTCAGCACTGAACAACAACAAGACTCTTGGTCCCAGAAGAAGAAAAGTAACAAAAGGAACTACCAATAACATCGTTGGTTCAcccttcttctttttttttggtGTGCATTGGCGGTATGTCTTCATTTGGACAAAAACCAGAAGACGGGACACGTCTAGGgtggtggggagggagagggtcgACATGGATGCTGATCTGAGGTGATGGTAGTACTACAGAGTTTGTGTCAATCTAAACTTTTATATGTAAAAAAGGGAAACAAAAAGTTCATGTATGTGTTGATAGTTGACTGGTTTTACCCAAATATTGAGGTGTACATTCGGATTACTGGTGTGTCATGTCCTGTTTGATCTCTGTACAATAACATAAGTTTTTCTTAagtaaacaacaaaaaaatgaaaacataCATTGTGATTGTTGAATTTACTGTATTTTTACAGTTGTATGCAACAGAATAATAACAAAAACAGACCATTCAATATAAACAATGTCAACTTCAGTGTAACATAGTGTGCTATCATTTCTGAGGCAGAAcaatacaatataaaatattTATGGAATTTTTGTCACAAATGAAGTCCAAGCACTGCAAAACAAACATgattaaaacataaaaaata
>XM_036989916.1
CACTCGAATCAAGGAATGCTTTCACCTGATTCCGCGGTGCTGGCTGGAGTGCCAGCGAGGAGCGGGGATTCTTTTTCTAAGGACAACATCACTGTCAGACAAGGGGACAGTGCCGTCTTAAAATGTACTGTGGATAGCAAGGTATCGCGGGTGGCTTGGCTCAACCGCACCACCATTCTCTACGCGGGGGCTGACAAGTGGTCTCTGGACCCTCGAGTGGTCCGAATGGACAACACACCCGTGACAGAGTACAGCATAAAGATCCAGAATGTGAATGTACACGACGAGGGGCCCTACGTGTGCTCCATCCTCACAAGCAACAAACCCAAATCATCCAAAGTGCATCTCATCGTTCAAGTACCTGCGAAGATCACAAACATATCGACGGACATCACAGTGAACGAGGGCAGCAATGTAACTCTCATGTGTCTGGCCATTGGACGACCAGAGCCTAACATCATATGGAAACATCGCTCTGCAAAAGGACACAAATTTGTCACTGAAGGGGAATATGTTGATATGACAGCGATCACTAAAGAACAGTCGGGATCGTATGAATGCATCTCCTCCAATGACATCTCAGCCCCAGATGTGAAGACAGTGAAAGTCACAGTCAATTATGCTCCCTTCATTTTGAAGGCTGGGAGTACAGGTACCCCAGTGGGCCAAAAAGGGGTGCTCCAATGTGAGGCCTCTGCTGTTCCTGGTGCAGATTTTGAGTGGTACAAAGAGGACCGCAGACTCCTAAATGGACTGAATGGGATTAAGATAGAGAACCAAGGTAAACAATCCATGCTTATGTTTTTGAATGTTTCTGAAGAGGACTATGGAAACTACACGTGTGTGGCCATGAACACCATGGGGATCACCAATGCAAGCATAATCCTCTATGGTCCCGGGACTATGATGCATGATGTGAACAGGGCTGCCCTGTCGACCCACTGCTCCTTTTGCCTCCTGCTGACTGTTTTCTTGTTGTTCCTGCTCAAGTTTTGATGCAACACGGTTCATCCTCAGCTTTACTCAGCACTGAACAACAACAAGACTCTTGGTCCCAGAAGAAGAAAAGTAACAAAAGGAACTACCAATAACATCGTTGGTTCAcccttcttctttttttttggtGTGCATTGGCGGTATGTCTTCATTTGGACAAAAACCAGAAGACGGGACACGTCTAGGgtggtggggagggagagggtcgACATGGATGCTGATCTGAGGTGATGGTAGTACTACAGAGTTTGTGTCAATCTAAACTTTTATATGTAAAAAAGGGAAACAAAAAGTTCATGTATGTGTTGATAGTTGACTGGTTTTACCCAAATATTGAGGTGTACATTCGGATTACTGGTGTGTCATGTCCTGTTTGATCTCTGTACAATAACATAAGTTTTTCTTAagtaaacaacaaaaaaatgaaaacataCATTGTGATTGTTGAATTTACTGTATTTTTACAGTTGTATGCAACAGAATAATAACAAAAACAGACCATTCAATATAAACAATGTCAACTTCAGTGTAACATAGTGTGCTATCATTTCTGAGGCAGAAcaatacaatataaaatattTATGGAATTTTTGTCACAAATGAAGTCCAAGCACTGCAAAACAAACATgattaaaacataaaaaata
>XM_021617800.2
ctgtgtatgtgtgagtgagaaTACTGAATGAGGACTCCGTCGCTGCATGCTGCTACAATTTGCAGTGGATTTAAATAACCTTCAGCACAGAGAACACCAGTCGAAGGAAAAACTCCAAAATTGTAGATTTACGAAAGAGAGCAAAACATCACTGTCTTGTTGTCTGTGTTCCTGTTAGAAAAAACACTACTACAATACAAGAAGACGGCGAAGAAGAAGCACAAGTGTTCAACGGTGTCAACAGATTAAATTGGAAGAATGTATAATTCTATGTGTTTCCTCATCCTGTCATGGGTGTTCGCTCTGCTCGTGTTCCCAGGAGTGCCAGCGAGGAGCGGGGATTCTTTTTCTAAGGACAACATCACTGTCAGACAAGGGGACAGTGCCGTCTTAAAATGTACTGTGGATAGCAAGGTATCGCGGGTGGCTTGGCTCAACCGCACCACCATTCTCTACGCGGGGGCTGACAAGTGGTCTCTGGACCCTCGAGTGGTCCGAATGGACAACACACCCGTGACAGAGTACAGCATAAAGATCCAGAATGTGAATGTACACGACGAGGGGCCCTACGTGTGCTCCATCCTCACAAGCAACAAACCCAAATCATCCAAAGTGCATCTCATCGTTCAAGTACCTGCGAAGATCACAAACATATCGACGGACATCACAGTGAACGAGGGCAGCAATGTAACTCTCATGTGTCTGGCCATTGGACGACCAGAGCCTAACATCATATGGAAACATCGCTCTGCAAAAGGACACAAATTTGTCACTGAAGGGGAATATGTTGATATGACAGCGATCACTAAAGAACAGTCGGGATCGTATGAATGCATCTCCTCCAATGACATCTCAGCCCCAGATGTGAAGACAGTGAAAGTCACAGTCAATTATGCTCCCTTCATTTTGAAGGCTGGGAGTACAGGTACCCCAGTGGGCCAAAAAGGGGTGCTCCAATGTGAGGCCTCTGCTGTTCCTGGTGCAGATTTTGAGTGGTACAAAGAGGACCGCAGACTCCTAAATGGACTGAATGGGATTAAGATAGAGAACCAAGGTAAACAATCCATGCTTATGTTTTTGAATGTTTCTGAAGAGGACTATGGAAACTACACGTGTGTGGCCATGAACACCATGGGGATCACCAATGCAAGCATAATCCTCTATGGTCCCGGGACTATGATGCATGATGTGAACAGGGCTGCCCTGTCGACCCACTGCTCCTTTTGCCTCCTGCTGACTGTTTTCTTGTTGTTCCTGCTCAAGTTTTGATGCAACACGGTTCATCCTCAGCTTTACTCAGCACTGAACAACAACAAGACTCTTGGTCCCAGAAGAAGAAAAGTAACAAAAGGAACTACCAATAACATCGTTGGTTCAcccttcttctttttttttggtGTGCATTGGCGGTATGTCTTCATTTGGACAAAAACCAGAAGACGGGACACGTCTAGGgtggtggggagggagagggtcgACATGGATGCTGATCTGAGGTGATGGTAGTACTACAGAGTTTGTGTCAATCTAAACTTTTATATGTAAAAAAGGGAAACAAAAAGTTCATGTATGTGTTGATAGTTGACTGGTTTTACCCAAATATTGAGGTGTACATTCGGATTACTGGTGTGTCATGTCCTGTTTGATCTCTGTACAATAACATAAGTTTTTCTTAagtaaacaacaaaaaaatgaaaacataCATTGTGATTGTTGAATTTACTGTATTTTTACAGTTGTATGCAACAGAATAATAACAAAAACAGACCATTCAATATAAACAATGTCAACTTCAGTGTAACATAGTGTGCTATCATTTCTGAGGCAGAAcaatacaatataaaatattTATGGAATTTTTGTCACAAATGAAGTCCAAGCACTGCAAAACAAACATgattaaaacataaaaaata

Function

symbol description
opcml Is expressed in nervous system. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human OPCML (opioid binding protein/cell adhesion molecule like).

NR:

description
opioid-binding protein/cell adhesion molecule homolog isoform X2

GO: NA

KEGG:

id description
K06773 OPCML, OBCAM; opioid binding protein/cell adhesion molecule-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617799.2 False 2123 mRNA 0.43 7 22221614 22406650
XM_036989918.1 False 2000 mRNA 0.43 6 22221614 22406653
XM_036989916.1 False 1643 mRNA 0.44 8 22221614 22406712
XM_021617800.2 True 1916 mRNA 0.43 8 22221614 22567266
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Neighbor

gene id symbol gene type direction distance location
LOC118966719 NA coding downstream 162259 22057823 ~ 22059355 (-)
LOC110534911 LOC105028969 coding downstream 514135 21701220 ~ 21707479 (-)
LOC110533512 LOC106603680 coding downstream 523595 21695964 ~ 21698019 (-)
LOC110533508 LOC106567641 coding downstream 593222 21607579 ~ 21628392 (-)
LOC110533509 LOC100195904 coding downstream 618924 21593579 ~ 21602690 (-)
panx3 LOC106603665 coding upstream 103251 22670517 ~ 22685117 (-)
LOC110533517 LOC106603668 coding upstream 119159 22686425 ~ 22805373 (-)
LOC110533520 LOC106603666 coding upstream 305990 22873256 ~ 23115343 (-)
LOC110533523 LOC106603671 coding upstream 702657 23269923 ~ 23292880 (-)
LOC110533524 vps26b coding upstream 741165 23308431 ~ 23315758 (-)
G866952 NA non-coding downstream 3786 22217222 ~ 22217828 (-)
G866917 NA non-coding downstream 15612 22202110 ~ 22206002 (-)
G866674 NA non-coding downstream 374422 21842259 ~ 21847192 (-)
G865994 NA non-coding downstream 454919 21766350 ~ 21766695 (-)
G865982 NA non-coding downstream 465609 21755787 ~ 21756005 (-)
G867226 NA non-coding upstream 12531 22579797 ~ 22598251 (-)
G867237 NA non-coding upstream 32698 22599964 ~ 22600167 (-)
G867244 NA non-coding upstream 39015 22606281 ~ 22606494 (-)
G867249 NA non-coding upstream 41018 22608284 ~ 22608503 (-)
G867299 NA non-coding upstream 74757 22642023 ~ 22642260 (-)
G866654 NA other downstream 397993 21819111 ~ 21823621 (-)
G865988 LOC106578276 other downstream 461762 21759124 ~ 21759852 (-)
G865899 cssa04h11orf63 other downstream 528417 21691763 ~ 21693197 (-)
G863863 NA other downstream 2361003 19859070 ~ 19860611 (-)
G862927 NA other downstream 3194036 19025342 ~ 19027578 (-)
LOC110533569 LOC106567674 other upstream 4322759 26890009 ~ 26911668 (-)
G873209 orai2 other upstream 4595634 27162900 ~ 27164550 (-)
LOC110533580 tex14 other upstream 4785127 27330589 ~ 27366556 (-)
G873784 LOC106573797 other upstream 5015663 27582929 ~ 27584262 (-)
G874706 NA other upstream 5972963 28540229 ~ 28543267 (-)

Expression

LOC110533514(opcml) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110533514(opcml) Expression in each Bioproject

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LOC110533514(opcml) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network