ypel2a (LOC106603438)


Basic Information

Item Value
gene id ypel2a
gene name LOC106603438
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 26079908 ~ 26096800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617875.2
CTTTGCTCAATTTAAACCGTGCGCTCTACAGTCAGTATCCGATTAACATCCTCTGTTTATCGAGGCTTGAAGTCAACGCGTAGAAGAAAACCCTTTAACGGAATGAGCAGGATTTGCAACACAAAGTTGTGATCTGCAAAGGACAAGAGGCGACGATTGAATTTTCTCTATCCAAAGGTGTGTGCCTCCCACCCCACGCCCCACCACGGCCCTCACCTGTGTGTTGCGGTGCTTCCCCTGCGAGCCGTCCTGGGCCGGCAGCCCCTTCCTGCACCGCCCCCATACTTCGCCCAGCAACAGCAACGCCGTCGCCCCTGAAACCGCCGCTGTCTCCCAGGCAACTGTCATCATGACGCGCTCCAAGACCTTCCAGGCCTACCTGCCCAACTGCCACCGTACCTACAGCTGCATCCACTGTCGAGCTCACCTGGCCAACCATGACGAGCTCATCTCCAAGTCCTTCCAAGGAAGTCAAGGTCGAGCTTACCTCTTCAACTCAGTGGTGAACGTGGGGTGTGGACCAGCAGAAGAGAGGGTTCTGTTGACAGGGCTTCACGCGGTGGCTGATATCTACTGTGAAAACTGTAAGACCACGCTGGGCTGGAAATACgaGCATGCCTTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATTATCGAGCTGGCCCACATGATCAAGGACAATGGCTGGGACTGAGGGGGCTTACCTAACCCCTAAGGTTTACTGCTAGCTCATCCACATGGCCCTATTCACCTGAGACACAGCTCATGTACTCCCACAATACAcaggtgtaatggtgtgtgtgcgcgagtgtgcgtgcatgtgtgtttacCAGTCTAAAGCATATACAgatatgcacaaacacacacacacagttgcacaGAGACGTGTGTTTGTATTCACTCTGCATGCTGAAGCTTTTCCAGGCCTCAGGGTGGACAGGAGCCCACAGGTTAAGGGTTATAGGTCATAGGTTATGGTCTCTCTGGGGGATGAATGAGATGAACAATGACCATGGTAATGGACAGACAAGAATGGACCCCTCCAACCCCCCAAGACCCACTAACCCTACAATGAGGTGAAATTCTGTTCAACATTCCGTTTTTTACCTGCAATCACCCTCACTACCCTACATGGATCCTTCCACATGAAtgcattttttggttactatgttTCAATGGACTCCAttgaattaggaattagaatcaTTGTATAGGATCTCTATGATGGGCAGACTCATGGAAGACACCAACCAACCAGAATCACCAGACTTCTTGAAGCCTGAAATCGTCCAAAACTCCTTTCAACCAAATCAGCACCTTATTGTTCGGGATCGAGTTTGAAACAGATTGTCATAAATCTAATACTGCTTGATTGTTCatctgaaaaaaaaatatttgctgTTCTTAATTTTTTTATTCGAGCATGTGTTTAAGCTATGGATATATTTGTTAATTTATTTGGTATTGTTTGGGGACAATCCCCTTTTCCCCCCTTGTTAAAACGTAGCTTTGTTGGTTCCCCCCTCACTTCCAATGGTAGCAATCTTAAAAAGGAGGTGTCATTCAAGTTGTCATCCCTTTGCCGATCTGAGTGTGCTATTACCACCCTCTGTGAATGTTTTAGTAATGGCAGTGTGTGAGAGGAACCCAGATTGCACAAGGTTTACATGTCAACTGGGTAAAGAGACCGGGGGTAAAAATGTAGCACCCGTAGATCTTTTCAGTCTCAAAGCAATGCAGACATGAAGGTGGTGCAAACTGATGAGGAAATTAGGCATGTGAAGTGCCCCTTTCCTAGACGCTGATCTGAAGTCAGTGTTGTGTCACCCCCCATACCCCCAGAGGTTACGGTTAGAATATGGAGagggaaagctgatcctagagCTGCAACTTCTAACACGCACCTCACAGAGACTGATGGTTGTGAACTGGTGGTTCTCTGTTTACCTGGGTCTGCATCCTCCACTGCCTCCTtgctttgttttgttgttgattttATAAGATTTGAGAATTACAACATTTAAAATGGACTTTCTACAGTCTGGAACAGGAGAACCAATCGAAAGCCACAGAATACCCAATCAGAGGGTGTCACTCATCCCAGCACAACAACCAAAGACTCCCATCAACAATAAGTTGACCAAACAATGGACCTTGCGATTGATTGCTAGTATCAGGAAGTTGCCGAATGAAAGATTGTGATTGGCCGAGAGCCACTGTCGAACCTTGGCCTTTCTCTGTGAGATAATGCATTGTTTGGTTGCGACAATTACAATGTTAATACCTGTATATTCACTATGAACATGTGCATTATTATGTAACGATAAACAGTATTACACCATGTAAATAGCCATattcaatgttttatttattcaatTGATGATTATTTTAGTCTATGCTCTGCTGTCTGTCTTGGGGCCCCTTGGACAGTTAGATTTCCTACTTTTTTACTatttggagagagaaaaaaaaaagaaaaaaagtattttgcAAAGGAAGGAAAATTGATGGCAATATACAGTATGGAGACTCAATAAAGATTCTCATTTGATCGATC
>XM_021617876.2
CTTTGCTCAATTTAAACCGTGCGCTCTACAGTCAGTATCCGATTAACATCCTCTGTTTATCGAGGCTTGAAGTCAACGCGTAGAAGAAAACCCTTTAACGGAATGAGCAGGATTTGCAACACAAAGTTGTGATCTGCAAAGGACAAGAGGCGACGATTGAATTTTCTCTATCCAAAGTGTCCCTCCCCAGGTGTGTGCCTCCCACCCCACGCCCCACCACGGCCCTCACCTGTGTGTTGCGGTGCTTCCCCTGCGAGCCGTCCTGGGCCGGCAGCCCCTTCCTGCACCGCCCCCATACTTCGCCCAGCAACAGCAACGCCGTCGCCCCTGAAACCGCCGCTGTCTCCCAGGCAACTGTCATCATGACGCGCTCCAAGACCTTCCAGGCCTACCTGCCCAACTGCCACCGTACCTACAGCTGCATCCACTGTCGAGCTCACCTGGCCAACCATGACGAGCTCATCTCCAAGTCCTTCCAAGGAAGTCAAGGTCGAGCTTACCTCTTCAACTCAGTGGTGAACGTGGGGTGTGGACCAGCAGAAGAGAGGGTTCTGTTGACAGGGCTTCACGCGGTGGCTGATATCTACTGTGAAAACTGTAAGACCACGCTGGGCTGGAAATACgaGCATGCCTTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATTATCGAGCTGGCCCACATGATCAAGGACAATGGCTGGGACTGAGGGGGCTTACCTAACCCCTAAGGTTTACTGCTAGCTCATCCACATGGCCCTATTCACCTGAGACACAGCTCATGTACTCCCACAATACAcaggtgtaatggtgtgtgtgcgcgagtgtgcgtgcatgtgtgtttacCAGTCTAAAGCATATACAgatatgcacaaacacacacacacagttgcacaGAGACGTGTGTTTGTATTCACTCTGCATGCTGAAGCTTTTCCAGGCCTCAGGGTGGACAGGAGCCCACAGGTTAAGGGTTATAGGTCATAGGTTATGGTCTCTCTGGGGGATGAATGAGATGAACAATGACCATGGTAATGGACAGACAAGAATGGACCCCTCCAACCCCCCAAGACCCACTAACCCTACAATGAGGTGAAATTCTGTTCAACATTCCGTTTTTTACCTGCAATCACCCTCACTACCCTACATGGATCCTTCCACATGAAtgcattttttggttactatgttTCAATGGACTCCAttgaattaggaattagaatcaTTGTATAGGATCTCTATGATGGGCAGACTCATGGAAGACACCAACCAACCAGAATCACCAGACTTCTTGAAGCCTGAAATCGTCCAAAACTCCTTTCAACCAAATCAGCACCTTATTGTTCGGGATCGAGTTTGAAACAGATTGTCATAAATCTAATACTGCTTGATTGTTCatctgaaaaaaaaatatttgctgTTCTTAATTTTTTTATTCGAGCATGTGTTTAAGCTATGGATATATTTGTTAATTTATTTGGTATTGTTTGGGGACAATCCCCTTTTCCCCCCTTGTTAAAACGTAGCTTTGTTGGTTCCCCCCTCACTTCCAATGGTAGCAATCTTAAAAAGGAGGTGTCATTCAAGTTGTCATCCCTTTGCCGATCTGAGTGTGCTATTACCACCCTCTGTGAATGTTTTAGTAATGGCAGTGTGTGAGAGGAACCCAGATTGCACAAGGTTTACATGTCAACTGGGTAAAGAGACCGGGGGTAAAAATGTAGCACCCGTAGATCTTTTCAGTCTCAAAGCAATGCAGACATGAAGGTGGTGCAAACTGATGAGGAAATTAGGCATGTGAAGTGCCCCTTTCCTAGACGCTGATCTGAAGTCAGTGTTGTGTCACCCCCCATACCCCCAGAGGTTACGGTTAGAATATGGAGagggaaagctgatcctagagCTGCAACTTCTAACACGCACCTCACAGAGACTGATGGTTGTGAACTGGTGGTTCTCTGTTTACCTGGGTCTGCATCCTCCACTGCCTCCTtgctttgttttgttgttgattttATAAGATTTGAGAATTACAACATTTAAAATGGACTTTCTACAGTCTGGAACAGGAGAACCAATCGAAAGCCACAGAATACCCAATCAGAGGGTGTCACTCATCCCAGCACAACAACCAAAGACTCCCATCAACAATAAGTTGACCAAACAATGGACCTTGCGATTGATTGCTAGTATCAGGAAGTTGCCGAATGAAAGATTGTGATTGGCCGAGAGCCACTGTCGAACCTTGGCCTTTCTCTGTGAGATAATGCATTGTTTGGTTGCGACAATTACAATGTTAATACCTGTATATTCACTATGAACATGTGCATTATTATGTAACGATAAACAGTATTACACCATGTAAATAGCCATattcaatgttttatttattcaatTGATGATTATTTTAGTCTATGCTCTGCTGTCTGTCTTGGGGCCCCTTGGACAGTTAGATTTCCTACTTTTTTACTatttggagagagaaaaaaaaaagaaaaaaagtattttgcAAAGGAAGGAAAATTGATGGCAATATACAGTATGGAGACTCAATAAAGATTCTCATTTGATCGATC
>TU991767
ATCCGATTAACATCCTCTGTTTATCGAGGCTTGAAGTCAACGCGTAGAAGAAAACCCTTTAACGGAATGAGCAGGATTTGCAACACAAAGTTGTGATCTGCAAAGGACAAGAGGCGACGATTGAATTTTCTCTATCCAAAGGTGTGTGCCTCCCACCCCACGCCCCACCACGGCCCTCACCTGTGTGTTGCGGTGCTTCCCCTGCGAGCCGTCCTGGGCCGGCAGCCCCTTCCTGCACCGCCCCCATACTTCGCCCAGCAACAGCAACGCCGTCGCCCCTGAAACCGCCGCTGTCTCCCAGGCAACTGTCATCATGACGCGCTCCAAGACCTTCCAGGCCTACCTGCCCAACTGCCACCGTACCTACAGCTGCATCCACTGTCGAGCTCACCTGGCCAACCATGACGAGCTCATCTCCAAGTCCTTCCAAGGAAGTCAAGGTCGAGCTTACCTCTTCAACTCAGTGGTGAACGTGGGGTGTGGACCAGCAGAAGAGAGGGTTCTGTTGACAGGGCTTCACGCGGTGGCTGATATCTACTGTGAAAACTGTAAGACCACGCTGGGCTGGAAATACgaGCATGCCTTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATTATCGAGCTGGCCCACATGATCAAGGACAATGGCTGGGACTGAGGGGGCTTACCTAACCCCTAAGGTTTACTGCTAGCTCATCCACATGGCCCTATTCACCTGAGACACAGCTCATGTACTCCCACAATACAcaggtgtaatggtgtgtgtgcgcgagtgtgcgtgcatgtgtgtttacCAGTCTAAAGCATATACAgatatgcacaaacacacacacacagttgcacaGAGACGTGTGTTTGTATTCACTCTGCATGCTGAAGCTTTTCCAGGCCTCAGGGTGGACAGGAGCCCACAGGTTAAGGGTTATAGGTCATAGGTTATGGTCTCTCTGGGGGATGAATGAGATGAACAATGACCATGGTAATGGACAGACAAGAATGGACCCCTCCAACCCCCCAAGACCCACTAACCCTACAATGAGGTGAAATTCTGTTCAACATTCCGTTTTTTACCTGCAATCACCCTCACTACCCTACATGGATCCTTCCACATGAAtgcattttttggttactatgttTCAATGGACTCCAttgaattaggaattagaatcaTTGTATAGGATCTCTATGATGGGCAGACTCATGGAAGACACCAACCAACCAGAATCACCAGACTTCTTGAAGCCTGAAATCGTCCAAAACTCCTTTCAACCAAATCAGCACCTTATTGTTCGGGATCGAGTTTGAAACAGATTGTCATAAATCTAATACTGCTTGATTGTTCatctgaaaaaaaaatatttgctgTTCTTAATTTTTTTATTCGAGCATGTGTTTAAGCTATGGATATATTTGTTAATTTATTTGGTATTGTTTGGGGACAATCCCCTTTTCCCCCCTTGTTAAAACGTAGCTTTGTTGGTTCCCCCCTCACTTCCAATGGTAGCAATCTTAAAAAGGAGGTGTCATTCAAGTTGTCATCCCTTTGCCGATCTGAGTGTGCTATTACCACCCTCTGTGAATGTTTTAGTAATGGCAGTGTGTGAGAGGAACCCAGATTGCACAAGGTTTACATGTCAACTGGGTAAAGAGACCGGGGGTAAAAATGTAGCACCCGTAGATCTTTTCAGTCTCAAAGCAATGCAGACATGAAGGTGGTGCAAACTGATGAGGAAATTAGGCATGTGAAGTGCCCCTTTCCTAGACGCTGATCTGAAGTCAGTGTTGTGTCACCCCCCATACCCCCAGAGGTTACGGTTAGAATATGGAGagggaaagctgatcctagagCTGCAACTTCTAACACGCACCTCACAGAGACTGATGGTTGTGAACTGGTGGTTCTCTGTTTACCTGGGTCTGCATCCTCCACTGCCTCCTtgctttgttttgttgttgattttATAAGATTTGAGAATTACAACATTTAAAATGGACTTTCTACAGTCTGGAACAGGAGAACCAATCGAAAGCCACAGAATACCCAATCAGAGGGTGTCACTCATCCCAGCACAACAACCAAAGACTCCCATCAACAATAAGTTGACCAAACAATGGACCTTGCGATTGATTGCTAGTATCAGGAAGTTGCCGAATGAAAGATTGTGATTGGCCGAGAGCCACTGTCGAACCTTGGCCTTTCTCTGTGAGATAATGCATTGTTTGGTTGCGACAATTACAATGTTAATACCTGTATATTCACTATGAACATGTGCATTATTATGTAACGATAAACAGTATTACACCATGTAAATAGCCATattcaatgttttatttattcaatTGATGATTATTTTAGTCTATGCTCTGCTGTCTGTCTTGGGGCCCCTTGGACAGTTAGATTTCCTACTTTTTTACTatttggagagagaaaaaaaaaagaaaaaaagtattttgcAAAGGAAGGAAAATTGATGGCAATATACAGTATGGAGACTCAATAAAGATTCTCATTTGATCGATCTGAAACAGAGGCCAAAGTATGTTTTATACTCGCTTGGTTGCTAGTCTTGTACTTTAGCCAACCCCTTTGGCTTTTGAGATGACAACAACcacaggtagccaagtggttagagcatgGGGCCAGTAGCTGAATGGTTGCTGGAtgaaatcccccgagctgacaaggtaaaaatctgtcattcggcccctgaacaaggcagttaacccactgttcgccggtaggccgtcattgtaaataagaattagttcttaactgacttgcctagttaaataaaataaataaaaaccacaAATGAGCTGGCTAAAACAGAAACAGATCTGGCAACCAGGGTCATTGtattgtacatacagtgccttcagaaagtattcataccccttgacttattacacattttgtcgAACCTGGACTCAAAATAGACTCAATATTTATTTCTTAcccatattcacacacacacacacacacacacacactaccccatcatgataaattgaaaacatgtttttagaaatgtttgcacatttattgaaaatgaaatacagaaagatctaatttacataagtgagtcaatacatgttagaatcacctttggcagcgattacagccgagAGTTTtttggggtaagtctctaagagtctctAAGTCTCTAagacacctggattgtacaatatttgcgcattattcttttaaaaaatgtTCAAGGTCTGTCAAGTTATTTGTTGATAATTGCtcaacagccattttcaagttttgccatagatttccaagtcgatttaagtcaaaactgtaactaggccactcaggtacattcaatgtcgtcttggtaagcaactccagtatatacagtatatgtgttttaggttactgtcctgctgaaaggtgaatttgtcttccagtgtctgttggaaagcagactgaagaaggttttcctctaggattttacctgtgttTAGCtcttttctgtttatttttaaacaaaaaaacatcttaaTCCTTGTTGATGACAGGCATACCAATAacgtgatgcagccaccaccatgcttgaaaatatgaagtgatATTCAGTGATGTCTTGTTGGATTTGACAcaaacataaggctttgtattcagaacataaAGTTCCTTTCTTTGCcactttttttgcagttttactttagtgccttattgcaaacaggatgcatgttttggaatatttctgTACACGCAAacttcttttcactctgccatttaggttagtattgtggagtaactacaatgttgttgatgcatcctcacagccattaaactc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617875.2 False 2563 mRNA 0.45 5 26079908 26095515
XM_021617876.2 False 2576 mRNA 0.45 5 26079908 26095515
TU991767 True 3812 TUCP 0.43 5 26079944 26096800

Neighbor

gene id symbol gene type direction distance location
LOC110533546 LOC106603437 coding upstream 7971 26063094 ~ 26071937 (+)
prr11 prr11 coding upstream 16936 26057493 ~ 26062972 (+)
rhbdd2 LOC106603431 coding upstream 72912 26003914 ~ 26006996 (+)
LOC110533540 LOC106603626 coding upstream 156652 25920338 ~ 25923256 (+)
LOC110534875 LOC106603627 coding upstream 186011 25882740 ~ 25893897 (+)
pom121 LOC106603439 coding downstream 20246 26115761 ~ 26126107 (+)
LOC110533549 LOC106603440 coding downstream 37922 26133437 ~ 26139624 (+)
LOC110533552 LOC106603441 coding downstream 46139 26141654 ~ 26151813 (+)
LOC110533554 LOC106603444 coding downstream 168750 26264265 ~ 26281930 (+)
LOC118966723 ripply3 coding downstream 249108 26344617 ~ 26357434 (+)
G871045 t120a non-coding upstream 27288 26047951 ~ 26052620 (+)
G871005 NA non-coding upstream 93228 25984088 ~ 25986680 (+)
G870949 NA non-coding upstream 182401 25897118 ~ 25897507 (+)
G870955 NA non-coding upstream 188977 25890632 ~ 25890931 (+)
G871183 NA non-coding downstream 229058 26324573 ~ 26329479 (+)
G871206 NA non-coding downstream 285917 26381432 ~ 26384496 (+)
G871314 NA non-coding downstream 454368 26549883 ~ 26550129 (+)
G870863 NA other upstream 254520 25820346 ~ 25825388 (+)
LOC110534872 LOC107603288 other upstream 388214 25688669 ~ 25794691 (+)
LOC110533530 LOC106603640 other upstream 726633 25057727 ~ 25379589 (+)
LOC110533527 LOC106603676 other upstream 2334274 23561844 ~ 23762824 (+)
ncapd3 ncapd3 other upstream 2730577 23316281 ~ 23349337 (+)
LOC110534876 LOC106603451 other downstream 752856 26848371 ~ 26860066 (+)
ap2b1 ap2b1 other downstream 1166241 27177610 ~ 27268794 (+)
ppm1e ppm1e other downstream 1397218 27409651 ~ 27496872 (+)
G874108 pgk other downstream 1994391 28089906 ~ 28117360 (+)
LOC110533598 LOC106603479 other downstream 2067312 28162794 ~ 28171287 (+)

Expression


Co-expression Network