LOC110533582 (rad51c)


Basic Information

Item Value
gene id LOC110533582
gene name rad51c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 27366588 ~ 27396718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989995.1
GTAATgtaatgacgtgtgtgtgtgtgggtgggtggcgCTAGTAAACACATTTTGGAGGGATTCATGAAAATGGCTCCAGCTATGTACTTGGAAATTTGTTTCCTCAtcgctagctagtagctagcttCAGCAGAAGTAAAACTTGGCTTGCTGAGGAGGTCGCTGAAACGATAAGCGAAAGATGCAGAGAGATATTTCGAGCTACGCCATTGCGCCGTCTGTCAAAGTGAAACTCCTCAATGCTGGGTTTCTTTCTGCTGCAGACCTGTGTGATTTGCGACCTCTCCAACTCAGCAAAGAGGCCTGCATCTCCCAGGAGGAGGCAGTAGAGGTGCTGCAGGCTGTGAGGTGTGAGTCTGGCCAGGAGAGAGCAGCAGCAGGCAGGCTGACAGCCCTGGAGCTTCTGGGGAGAGAGCAGGAGCTGGGCACTATAGTCACTTTCTGCTCAGCACTGGATATGGCCCTGGGAGGGGGCATGCCAGTGGGAAAGACCACTGAGGTCTGCGGGGCGCCTGGGGTGGGAAAGACCCAGCTCTGTATCCAGTTGTCAGTAGATGCGCAGATCCCTGTGTGTTTTGGGGGGTTGGGAGGCAAGTCTCTGTACATAGACACAGAGGGCAGCTTCCTGGTCCAGAGGGCTGTGGACCTAGCGCAGGCAGCTGTGGATCACTGTGGGCTTCTAGCAGAGGATTCAGAACAGCAGGAAGCCTTGAAGGGGTTCACTGTGGAAACAATCCTCTCCAATTTATTCCTTGTCCGTTGCCATGACTACGTGGAGCTGTTGGCAGAGACATACCTCCTGCCTGACTTCCTGGCTCAGCACCCTGGGGTCCGGCTGGTGGTGATTGACAGCATTGCCTTCTCGTTTCGCCATGACTTTGAGGACCTCTCCCAGAGGACCCGCCTCTTGAACGGCCTCGCCCAGCGGCTCATCCAGATGGCCACCAATCACAACGTTGCGGTCATTCTTACCAATCAGATGACTACAAAGGTTTGGAGTGGCCAATCGAAGCTTGTTCCTGCCTTAGACTTGCATCCCTGTACAAGTCACCCAGCCAAAGGGAGGCCACAGTACCctaccagatcactGGTCAAGGCTTTCGAGACGCGCCCCCCTCAGACCAACCAAAGGCCTCAGATGACCCCTCTGTGAGACAATCAGGAAGCTTGAGCAAGCGTCCCCGGACGGAAGAGGACCAATCTACAAGAACATAGGGAAACGAGTGGTTTTAGACCATGAATGTGAAATATTGTTTTGTTTGAATGGTATTATACTTAGGGGAACAAAAACCCAATATACTCTTGTCTGCACAGTTTGTTGCTGAATATTTTGCTCAACACAATGTACAGTATTTACACTGAGTTGAAATACAATATTTGCCTCTGTCAATAGCTGTCCTGTAATTACTGCATGTTATCAtcatgtacaggtaactgcaaaaataaaggaaacacacca
>XM_021617941.2
GTAATgtaatgacgtgtgtgtgtgtgggtgggtggcgCTAGTAAACACATTTTGGAGGGATTCATGAAAATGGCTCCAGCTATGTACTTGGAAATTTGTTTCCTCAtcgctagctagtagctagcttCAGCAGAAGTAAAACTTGGCTTGCTGAGGAGGTCGCTGAAACGATAAGCGAAAGATGCAGAGAGATATTTCGAGCTACGCCATTGCGCCGTCTGTCAAAGTGAAACTCCTCAATGCTGGGTTTCTTTCTGCTGCAGACCTGTGTGATTTGCGACCTCTCCAACTCAGCAAAGAGGCCTGCATCTCCCAGGAGGAGGCAGTAGAGGTGCTGCAGGCTGTGAGGTGTGAGTCTGGCCAGGAGAGAGCAGCAGCAGGCAGGCTGACAGCCCTGGAGCTTCTGGGGAGAGAGCAGGAGCTGGGCACTATAGTCACTTTCTGCTCAGCACTGGATATGGCCCTGGGAGGGGGCATGCCAGTGGGAAAGACCACTGAGGTCTGCGGGGCGCCTGGGGTGGGAAAGACCCAGCTCTGTATCCAGTTGTCAGTAGATGCGCAGATCCCTGTGTGTTTTGGGGGGTTGGGAGGCAAGTCTCTGTACATAGACACAGAGGGCAGCTTCCTGGTCCAGAGGGCTGTGGACCTAGCGCAGGCAGCTGTGGATCACTGTGGGCTTCTAGCAGAGGATTCAGAACAGCAGGAAGCCTTGAAGGGGTTCACTGTGGAAACAATCCTCTCCAATTTATTCCTTGTCCGTTGCCATGACTACGTGGAGCTGTTGGCAGAGACATACCTCCTGCCTGACTTCCTGGCTCAGCACCCTGGGGTCCGGCTGGTGGTGATTGACAGCATTGCCTTCTCGTTTCGCCATGACTTTGAGGACCTCTCCCAGAGGACCCGCCTCTTGAACGGCCTCGCCCAGCGGCTCATCCAGATGGCCACCAATCACAACGTTGCGGTCATTCTTACCAATCAGATGACTACAAAGGTTTGGAGTGGCCAATCGAAGCTTGTTCCTGCCTTAGGTGAGAGCTGGGGTCACGCTGCTACACAGAGACTCATCCTACACTGGGAGGGCACACACAGACTTGCATCCCTGTACAAGTCACCCAGCCAAAGGGAGGCCACAGTACCctaccagatcactGGTCAAGGCTTTCGAGACGCGCCCCCCTCAGACCAACCAAAGGCCTCAGATGACCCCTCTGTGAGACAATCAGGAAGCTTGAGCAAGCGTCCCCGGACGGAAGAGGACCAATCTACAAGAACATAGGGAAACGAGTGGTTTTAGACCATGAATGTGAAATATTGTTTTGTTTGAATGGTATTATACTTAGGGGAACAAAAACCCAATATACTCTTGTCTGCACAGTTTGTTGCTGAATATTTTGCTCAACACAATGTACAGTATTTACACTGAGTTGAAATACAATATTTGCCTCTGTCAATAGCTGTCCTGTAATTACTGCATGTTATCAtcatgtacaggtaactgcaaaaataaaggaaacacaccaa

Function

symbol description
rad51c Predicted to enable ATP binding activity; ATPase, acting on DNA; and DNA binding activity. Predicted to contribute to crossover junction endodeoxyribonuclease activity and four-way junction DNA binding activity. Predicted to be involved in meiotic DNA recombinase assembly and reciprocal meiotic recombination. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of Rad51B-Rad51C-Rad51D-XRCC2 complex and Rad51C-XRCC3 complex. Predicted to be active in replication fork. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group O and hereditary breast ovarian cancer syndrome. Orthologous to human RAD51C (RAD51 paralog C).

NR:

description
DNA repair protein RAD51 homolog 3

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10870 RAD51L2, RAD51C; RAD51-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989995.1 False 1459 mRNA 0.51 9 27366588 27396717
XM_021617941.2 True 1521 mRNA 0.51 10 27366588 27396718

Neighbor

gene id symbol gene type direction distance location
LOC110533584 ska2 coding upstream 36004 27309669 ~ 27330584 (+)
LOC110533579 rasl10b coding upstream 78883 27272327 ~ 27287705 (+)
ap2b1 ap2b1 coding upstream 97801 27177610 ~ 27268794 (+)
orai2 orai2 coding upstream 202495 27159949 ~ 27164093 (+)
bckdk LOC106603456 coding upstream 207063 27127918 ~ 27159525 (+)
ppm1e ppm1e coding downstream 12933 27409651 ~ 27496872 (+)
LOC110533592 LOC106568026 coding downstream 483674 27880392 ~ 27888907 (+)
LOC110533593 LOC106603472 coding downstream 594962 27991680 ~ 28004015 (+)
LOC118936920 LOC106571430 coding downstream 746595 28143313 ~ 28144703 (+)
LOC110533598 LOC106603479 coding downstream 766076 28162794 ~ 28171287 (+)
G871743 LOC100196673 non-coding upstream 54763 27305871 ~ 27311825 (+)
G871740 NA non-coding upstream 66735 27299503 ~ 27299853 (+)
G871736 NA non-coding upstream 70531 27295791 ~ 27296057 (+)
G871685 LOC106613431 non-coding upstream 72083 27292978 ~ 27294505 (+)
G871727 NA non-coding upstream 95748 27270624 ~ 27270840 (+)
G871841 NA non-coding downstream 50013 27446731 ~ 27447098 (+)
G871909 NA non-coding downstream 147270 27543988 ~ 27545316 (+)
G871910 NA non-coding downstream 150072 27546790 ~ 27547028 (+)
G873438 NA non-coding downstream 171435 27568153 ~ 27568491 (+)
G873442 LOC106603469 non-coding downstream 175115 27571833 ~ 27576065 (+)
LOC110534876 LOC106603451 other upstream 507485 26848371 ~ 26860066 (+)
ypel2a LOC106603438 other upstream 1269788 26079908 ~ 26096800 (+)
G870863 NA other upstream 1541200 25820346 ~ 25825388 (+)
LOC110534872 LOC107603288 other upstream 1674894 25688669 ~ 25794691 (+)
G874108 pgk other downstream 693188 28089906 ~ 28117360 (+)
G874438 LOC106603484 other downstream 1159822 28556540 ~ 28557644 (+)
G874378 NA other downstream 1180734 28577452 ~ 28584415 (+)

Expression


Co-expression Network