LOC110533593 (LOC106603472)


Basic Information

Item Value
gene id LOC110533593
gene name LOC106603472
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 27991680 ~ 28004015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617958.2
GTCAATTTCCCTAACCCACCAATCACAGACGGTTGCGTGCGTCAACACAGCGAAAGGGGGCGGTCTGTTGTCAACATTTTTTGCAGCGCTTCGCAGTGAAGCAGCTGAAAGAGCTACCATGGCCTCTTCGGGGTTTCGTGGTGACGTTTCCCAGGTGCGTGGCGGCCGTGATCCCGTCTTCTCTGAGGCCATCAACCAGAAGATGCGTGTCCCGGACCGGCTGAGAGTGGGGCCAGGCATGGGACAGGGAGGGGAAGAGGCGAGGCAGGGGCGTGCTGAGCGTCCCGCTTCCTATAGCATGCACATCCCAGACAGGCTGTCTCTCACAGATGCCCCGGACATGAGCCCCCGTCCACTGTTCACGCCATCCAAGCACAACTCAGCCCTCCCCCTGGGGCTTGCATGGGAGGCACAGCAGCAAGGTGCCTGGGACAGAGACCCCTACATGAGGGAACCAGTGCAGAGTCCCCTGCGGAGGTCCTACAGTGACCAGGCTTTTGGCAGGAGTGACCCTGACACCCCCACTTCCAAACAGGCACTGCACACCCCCACCTTTAGTGGCGGTGCAGGACGCCCCCCTAAGCGCTCCGCTGCTGCTGCAAACCCCCTGCCCATGGTCCTGGGGCTCCCTGTCATCCCACCCAGCCACCTGTCCCCAACGACCATGCTACAGGCCGCCAAGGAACTGGGCCAACAGGCCTCACAGCGCCTCCTGCAGACTGTTACACAGAAATACAGGTTCAGTTATCCTGAACACCCAACGACTGCTGTGGTCGAGGCACCCCCTGTGTACGTTGAACCAGCCAGGAAAAGTGCCATGCAGGACTCCTGGATGAGCCCAGATGATGAGGGAAGTGCCGCAGCTGTGGAGTTCATCGTACTTAGGAGACAGGTGGTGAAGATGAGTCGTCGTCTGGCGGGTCTGGAAAGGCAGAATGCTGAATGCAGACAGACGGAGCTGGTGCTCTTCTCCCTGctcctttctgcctgcctgctcAACGGATGGCTCTGGATACGCAGATAACAGACACGCGTCATTCAAACAGCCCACTCATCTGCACTACAACCCTCCAACCAGCTACTTTGCTCAACTCTGTATTACACATCCACTCAGCTGGGTATTGCAGTGCACTTATTTACACATGTTGGTATTAGGTGCTCAGCATCTATCTGTTTGGACCACTTAAGTAGGGACAGTTCATCCATTTTTACATGTGGCCTTATTTTCACTCTTTCTGTTCTTGTAGTTGATTCCCAAActtaattgttttatttgtttCCTTACAGAGAAAATTGGTTGTCATCACTTGCCATTGACTATAATGCAATATCCAAATGTCGAAAGCATATTGGAAAACACTCCACAGTACATAAGAATCCCATTCTGAATGTCTCTTTACTCAGTTTTTAAAAAGTCCACTGTGCCATAAATCCATGTTTGAATGGTTCTGTTTACAACAAAAATATGGATTTATTGGgacattgaaataaataaatagagagCAGAAACAATTTAGAATGGAATTTTGACGTGATATGAAATTGACATTTTCTCTAATATATTTAATAAACTATTTGGGGATCAACTACGAGCACAGAAAGTGAAAATAAGTCATTTAAATGTAAAAATCAGGGAACTTCCCCTTTAAGTAGGGCCTTAGGACTGAGGTTCGAATGAGGGTGTTGAGAGTTAGTGtgcaaaggttaaataaattacaATGCATTGTCAAGGTGGAGGCTGGCCAATTTCAACATAATCAGGGATTGATTCATGCATCAAGGATTGGCCGTCTGACCTGGACAGCTAGTTTACCACGGCTGGAGGAGGTGATGGTGTTACTGCTGAAGCTCTGCTACATTCTGGTGGCTAGGTTGGATATTCAGATTCACGTCATAGGTCTGTCAAAACACAACTTGTAACATTTGAATGTAGTTGGTAGTCTCTTCCCATAGCCCCTGTATCTGGGGGTGGATCGCCACAAGTCAGTTGGTAACTGGTCTGAAGTATCTAGTAAACCATTATGGCATGATTTACTTGGAACTCTTCAGACCTAAAGAAGCCTAAATTGTAATCAGTTGCAGACAGTACATAGGTAATAAGGTTCTAAgacctacactatatatacaaaagtatgtggacaccccttcaaactctttcagccacacccgttgctgacaggtgtatagaattgaacacacagccatgtaatcccCATAGACAAACATACCGAGGACAGA
>XM_036990004.1
GTCAATTTCCCTAACCCACCAATCACAGACGGTTGCGTGCGTCAACACAGCGAAAGGGGGCGGTCTGTTGTCAACATTTTTTGCAGCGCTTCGCAGTGAAGCAGCTGAAAGAGCTACCATGGCCTCTTCGGGGTTTCGTGGTGACGTTTCCCAGGTGCGTGGCGGCCGTGATCCCGTCTTCTCTGAGGCCATCAACCAGAAGATGCGTGTCCCGGACCGGCTGAGAGTGGGGCCAGGCATGGGACAGGGAGGGGAAGAGGCGAGGCAGGGGCGTGCTGAGCGTCCCGCTTCCTATAGCATGCACATCCCAGACAGGCTGTCTCTCACAGATGCCCCGGACATGAGCCCCCGTCCACTGTTCACGCCATCCAAGCACAACTCAGCCCTCCCCCTGGGGCTTGCATGGGAGGCACAGCAGCAAGGTGCCTGGGACAGAGACCCCTACATGAGGGAACCAGTGCAGAGTCCCCTGCGGAGGTCCTACAGTGACCAGGCTTTTGGCAGGAGTGACCCTGACACCCCCACTTCCAAACAGGCACTGCACACCCCCACCTTTGGCGGTGCAGGACGCCCCCCTAAGCGCTCCGCTGCTGCTGCAAACCCCCTGCCCATGGTCCTGGGGCTCCCTGTCATCCCACCCAGCCACCTGTCCCCAACGACCATGCTACAGGCCGCCAAGGAACTGGGCCAACAGGCCTCACAGCGCCTCCTGCAGACTGTTACACAGAAATACAGGTTCAGTTATCCTGAACACCCAACGACTGCTGTGGTCGAGGCACCCCCTGTGTACGTTGAACCAGCCAGGAAAAGTGCCATGCAGGACTCCTGGATGAGCCCAGATGATGAGGGAAGTGCCGCAGCTGTGGAGTTCATCGTACTTAGGAGACAGGTGGTGAAGATGAGTCGTCGTCTGGCGGGTCTGGAAAGGCAGAATGCTGAATGCAGACAGACGGAGCTGGTGCTCTTCTCCCTGctcctttctgcctgcctgctcAACGGATGGCTCTGGATACGCAGATAACAGACACGCGTCATTCAAACAGCCCACTCATCTGCACTACAACCCTCCAACCAGCTACTTTGCTCAACTCTGTATTACACATCCACTCAGCTGGGTATTGCAGTGCACTTATTTACACATGTTGGTATTAGGTGCTCAGCATCTATCTGTTTGGACCACTTAAGTAGGGACAGTTCATCCATTTTTACATGTGGCCTTATTTTCACTCTTTCTGTTCTTGTAGTTGATTCCCAAActtaattgttttatttgtttCCTTACAGAGAAAATTGGTTGTCATCACTTGCCATTGACTATAATGCAATATCCAAATGTCGAAAGCATATTGGAAAACACTCCACAGTACATAAGAATCCCATTCTGAATGTCTCTTTACTCAGTTTTTAAAAAGTCCACTGTGCCATAAATCCATGTTTGAATGGTTCTGTTTACAACAAAAATATGGATTTATTGGgacattgaaataaataaatagagagCAGAAACAATTTAGAATGGAATTTTGACGTGATATGAAATTGACATTTTCTCTAATATATTTAATAAACTATTTGGGGATCAACTACGAGCACAGAAAGTGAAAATAAGTCATTTAAATGTAAAAATCAGGGAACTTCCCCTTTAAGTAGGGCCTTAGGACTGAGGTTCGAATGAGGGTGTTGAGAGTTAGTGtgcaaaggttaaataaattacaATGCATTGTCAAGGTGGAGGCTGGCCAATTTCAACATAATCAGGGATTGATTCATGCATCAAGGATTGGCCGTCTGACCTGGACAGCTAGTTTACCACGGCTGGAGGAGGTGATGGTGTTACTGCTGAAGCTCTGCTACATTCTGGTGGCTAGGTTGGATATTCAGATTCACGTCATAGGTCTGTCAAAACACAACTTGTAACATTTGAATGTAGTTGGTAGTCTCTTCCCATAGCCCCTGTATCTGGGGGTGGATCGCCACAAGTCAGTTGGTAACTGGTCTGAAGTATCTAGTAAACCATTATGGCATGATTTACTTGGAACTCTTCAGACCTAAAGAAGCCTAAATTGTAATCAGTTGCAGACAGTACATAGGTAATAAGGTTCTAAgacctacactatatatacaaaagtatgtggacaccccttcaaactctttcagccacacccgttgctgacaggtgtatagaattgaacacacagccatgtaatcccCATAGACAAACATACCGAGGACAGA
>XM_036990002.1
GGGTCGCCTAATGTCAACTTTCTAAAAAAAGTTTAGGGAGCTAGATACATATTTGGTGTGGATAAACTGTGTAGCTACGTTGTCAAAGATAATGTCAACATTGCTGCGGATTTAGTTAGCCAAATGAGGTCAAATTGGTCATCAGATTTAGCTTGCATGCTAACTGATAAGCTAATGACTAAAGCTACTAGTTAGCTGGCCAAAGAGCGCTAACCTGCAAGTTACTCCTCAGCAGCTGAAAGAGCTACCATGGCCTCTTCGGGGTTTCGTGGTGACGTTTCCCAGGTGCGTGGCGGCCGTGATCCCGTCTTCTCTGAGGCCATCAACCAGAAGATGCGTGTCCCGGACCGGCTGAGAGTGGGGCCAGGCATGGGACAGGGAGGGGAAGAGGCGAGGCAGGGGCGTGCTGAGCGTCCCGCTTCCTATAGCATGCACATCCCAGACAGGCTGTCTCTCACAGATGCCCCGGACATGAGCCCCCGTCCACTGTTCACGCCATCCAAGCACAACTCAGCCCTCCCCCTGGGGCTTGCATGGGAGGCACAGCAGCAAGGTGCCTGGGACAGAGACCCCTACATGAGGGAACCAGTGCAGAGTCCCCTGCGGAGGTCCTACAGTGACCAGGCTTTTGGCAGGAGTGACCCTGACACCCCCACTTCCAAACAGGCACTGCACACCCCCACCTTTAGTGGCGGTGCAGGACGCCCCCCTAAGCGCTCCGCTGCTGCTGCAAACCCCCTGCCCATGGTCCTGGGGCTCCCTGTCATCCCACCCAGCCACCTGTCCCCAACGACCATGCTACAGGCCGCCAAGGAACTGGGCCAACAGGCCTCACAGCGCCTCCTGCAGACTGTTACACAGAAATACAGGTTCAGTTATCCTGAACACCCAACGACTGCTGTGGTCGAGGCACCCCCTGTGTACGTTGAACCAGCCAGGAAAAGTGCCATGCAGGACTCCTGGATGAGCCCAGATGATGAGGGAAGTGCCGCAGCTGTGGAGTTCATCGTACTTAGGAGACAGGTGGTGAAGATGAGTCGTCGTCTGGCGGGTCTGGAAAGGCAGAATGCTGAATGCAGACAGACGGAGCTGGTGCTCTTCTCCCTGctcctttctgcctgcctgctcAACGGATGGCTCTGGATACGCAGATAACAGACACGCGTCATTCAAACAGCCCACTCATCTGCACTACAACCCTCCAACCAGCTACTTTGCTCAACTCTGTATTACACATCCACTCAGCTGGGTATTGCAGTGCACTTATTTACACATGTTGGTATTAGGTGCTCAGCATCTATCTGTTTGGACCACTTAAGTAGGGACAGTTCATCCATTTTTACATGTGGCCTTATTTTCACTCTTTCTGTTCTTGTAGTTGATTCCCAAActtaattgttttatttgtttCCTTACAGAGAAAATTGGTTGTCATCACTTGCCATTGACTATAATGCAATATCCAAATGTCGAAAGCATATTGGAAAACACTCCACAGTACATAAGAATCCCATTCTGAATGTCTCTTTACTCAGTTTTTAAAAAGTCCACTGTGCCATAAATCCATGTTTGAATGGTTCTGTTTACAACAAAAATATGGATTTATTGGgacattgaaataaataaatagagagCAGAAACAATTTAGAATGGAATTTTGACGTGATATGAAATTGACATTTTCTCTAATATATTTAATAAACTATTTGGGGATCAACTACGAGCACAGAAAGTGAAAATAAGTCATTTAAATGTAAAAATCAGGGAACTTCCCCTTTAAGTAGGGCCTTAGGACTGAGGTTCGAATGAGGGTGTTGAGAGTTAGTGtgcaaaggttaaataaattacaATGCATTGTCAAGGTGGAGGCTGGCCAATTTCAACATAATCAGGGATTGATTCATGCATCAAGGATTGGCCGTCTGACCTGGACAGCTAGTTTACCACGGCTGGAGGAGGTGATGGTGTTACTGCTGAAGCTCTGCTACATTCTGGTGGCTAGGTTGGATATTCAGATTCACGTCATAGGTCTGTCAAAACACAACTTGTAACATTTGAATGTAGTTGGTAGTCTCTTCCCATAGCCCCTGTATCTGGGGGTGGATCGCCACAAGTCAGTTGGTAACTGGTCTGAAGTATCTAGTAAACCATTATGGCATGATTTACTTGGAACTCTTCAGACCTAAAGAAGCCTAAATTGTAATCAGTTGCAGACAGTACATAGGTAATAAGGTTCTAAgacctacactatatatacaaaagtatgtggacaccccttcaaactctttcagccacacccgttgctgacaggtgtatagaattgaacacacagccatgtaatcccCATAGACAAACATACCGAGGACAGA
>XM_036990003.1
GGGTCGCCTAATGTCAACTTTCTAAAAAAAGTTTAGGGAGCTAGATACATATTTGGTGTGGATAAACTGTGTAGCTACGTTGTCAAAGATAATGTCAACATTGCTGCGGATTTAGTTAGCCAAATGAGGTCAAATTGGTCATCAGATTTAGCTTGCATGCTAACTGATAAGCTAATGACTAAAGCTACTAGTTAGCTGGCCAAAGAGCGCTAACCTGCAAGTTACTCCTCAGCTGAAAGAGCTACCATGGCCTCTTCGGGGTTTCGTGGTGACGTTTCCCAGGTGCGTGGCGGCCGTGATCCCGTCTTCTCTGAGGCCATCAACCAGAAGATGCGTGTCCCGGACCGGCTGAGAGTGGGGCCAGGCATGGGACAGGGAGGGGAAGAGGCGAGGCAGGGGCGTGCTGAGCGTCCCGCTTCCTATAGCATGCACATCCCAGACAGGCTGTCTCTCACAGATGCCCCGGACATGAGCCCCCGTCCACTGTTCACGCCATCCAAGCACAACTCAGCCCTCCCCCTGGGGCTTGCATGGGAGGCACAGCAGCAAGGTGCCTGGGACAGAGACCCCTACATGAGGGAACCAGTGCAGAGTCCCCTGCGGAGGTCCTACAGTGACCAGGCTTTTGGCAGGAGTGACCCTGACACCCCCACTTCCAAACAGGCACTGCACACCCCCACCTTTAGTGGCGGTGCAGGACGCCCCCCTAAGCGCTCCGCTGCTGCTGCAAACCCCCTGCCCATGGTCCTGGGGCTCCCTGTCATCCCACCCAGCCACCTGTCCCCAACGACCATGCTACAGGCCGCCAAGGAACTGGGCCAACAGGCCTCACAGCGCCTCCTGCAGACTGTTACACAGAAATACAGGTTCAGTTATCCTGAACACCCAACGACTGCTGTGGTCGAGGCACCCCCTGTGTACGTTGAACCAGCCAGGAAAAGTGCCATGCAGGACTCCTGGATGAGCCCAGATGATGAGGGAAGTGCCGCAGCTGTGGAGTTCATCGTACTTAGGAGACAGGTGGTGAAGATGAGTCGTCGTCTGGCGGGTCTGGAAAGGCAGAATGCTGAATGCAGACAGACGGAGCTGGTGCTCTTCTCCCTGctcctttctgcctgcctgctcAACGGATGGCTCTGGATACGCAGATAACAGACACGCGTCATTCAAACAGCCCACTCATCTGCACTACAACCCTCCAACCAGCTACTTTGCTCAACTCTGTATTACACATCCACTCAGCTGGGTATTGCAGTGCACTTATTTACACATGTTGGTATTAGGTGCTCAGCATCTATCTGTTTGGACCACTTAAGTAGGGACAGTTCATCCATTTTTACATGTGGCCTTATTTTCACTCTTTCTGTTCTTGTAGTTGATTCCCAAActtaattgttttatttgtttCCTTACAGAGAAAATTGGTTGTCATCACTTGCCATTGACTATAATGCAATATCCAAATGTCGAAAGCATATTGGAAAACACTCCACAGTACATAAGAATCCCATTCTGAATGTCTCTTTACTCAGTTTTTAAAAAGTCCACTGTGCCATAAATCCATGTTTGAATGGTTCTGTTTACAACAAAAATATGGATTTATTGGgacattgaaataaataaatagagagCAGAAACAATTTAGAATGGAATTTTGACGTGATATGAAATTGACATTTTCTCTAATATATTTAATAAACTATTTGGGGATCAACTACGAGCACAGAAAGTGAAAATAAGTCATTTAAATGTAAAAATCAGGGAACTTCCCCTTTAAGTAGGGCCTTAGGACTGAGGTTCGAATGAGGGTGTTGAGAGTTAGTGtgcaaaggttaaataaattacaATGCATTGTCAAGGTGGAGGCTGGCCAATTTCAACATAATCAGGGATTGATTCATGCATCAAGGATTGGCCGTCTGACCTGGACAGCTAGTTTACCACGGCTGGAGGAGGTGATGGTGTTACTGCTGAAGCTCTGCTACATTCTGGTGGCTAGGTTGGATATTCAGATTCACGTCATAGGTCTGTCAAAACACAACTTGTAACATTTGAATGTAGTTGGTAGTCTCTTCCCATAGCCCCTGTATCTGGGGGTGGATCGCCACAAGTCAGTTGGTAACTGGTCTGAAGTATCTAGTAAACCATTATGGCATGATTTACTTGGAACTCTTCAGACCTAAAGAAGCCTAAATTGTAATCAGTTGCAGACAGTACATAGGTAATAAGGTTCTAAgacctacactatatatacaaaagtatgtggacaccccttcaaactctttcagccacacccgttgctgacaggtgtatagaattgaacacacagccatgtaatcccCATAGACAAACATACCGAGGACAGA

Function

NR:

description
mitochondrial fission factor homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617958.2 False 2238 mRNA 0.49 8 27991680 28004015
XM_036990004.1 False 2235 mRNA 0.49 8 27991680 28004015
XM_036990002.1 False 2369 mRNA 0.48 8 27991788 28004015
XM_036990003.1 True 2366 mRNA 0.48 8 27991788 28004015

Neighbor

gene id symbol gene type direction distance location
LOC110533592 LOC106568026 coding upstream 102773 27880392 ~ 27888907 (+)
ppm1e ppm1e coding upstream 494943 27409651 ~ 27496872 (+)
LOC110533582 rad51c coding upstream 594962 27366588 ~ 27396718 (+)
LOC110533584 ska2 coding upstream 661096 27309669 ~ 27330584 (+)
LOC110533579 rasl10b coding upstream 703975 27272327 ~ 27287705 (+)
LOC118936920 LOC106571430 coding downstream 139298 28143313 ~ 28144703 (+)
LOC110533598 LOC106603479 coding downstream 158779 28162794 ~ 28171287 (+)
LOC110534879 LOC106603480 coding downstream 298899 28302914 ~ 28321189 (+)
LOC110533601 LOC106603421 coding downstream 375414 28379429 ~ 28388942 (+)
LOC110533603 LOC106603482 coding downstream 390180 28394195 ~ 28412922 (+)
G873712 NA non-coding upstream 15353 27976087 ~ 27976327 (+)
G873521 NA non-coding upstream 288491 27702967 ~ 27703189 (+)
G873519 NA non-coding upstream 291087 27699799 ~ 27700593 (+)
G873517 NA non-coding upstream 295680 27695751 ~ 27696000 (+)
G873515 LOC106603419 non-coding upstream 297136 27694156 ~ 27694544 (+)
G873724 NA non-coding downstream 6098 28010113 ~ 28011507 (+)
G873728 LOC106603473 non-coding downstream 10890 28014905 ~ 28015174 (+)
G873727 LOC106603473 non-coding downstream 11848 28015863 ~ 28016094 (+)
G873729 LOC106603473 non-coding downstream 12396 28016411 ~ 28016934 (+)
G873731 NA non-coding downstream 14898 28018913 ~ 28019330 (+)
ap2b1 ap2b1 other upstream 722886 27177610 ~ 27268794 (+)
LOC110534876 LOC106603451 other upstream 1132577 26848371 ~ 26860066 (+)
ypel2a LOC106603438 other upstream 1894880 26079908 ~ 26096800 (+)
G870863 NA other upstream 2166292 25820346 ~ 25825388 (+)
G874108 pgk other downstream 85891 28089906 ~ 28117360 (+)
G874438 LOC106603484 other downstream 552525 28556540 ~ 28557644 (+)
G874378 NA other downstream 573437 28577452 ~ 28584415 (+)
G874510 NA other downstream 723759 28727774 ~ 28738905 (+)

Expression


Co-expression Network