LOC118936920 (LOC106571430)


Basic Information

Item Value
gene id LOC118936920
gene name LOC106571430
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 28143313 ~ 28144703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034350.1
cacaaatggATAAGAAAAGGTCTAAGCCATCAGGTGCCCAGTTAAGAAAAAgggggaaagaagaagaggagaaacgTCCAAAAGATAAAGGGGCACTTCTAAAATATTTTGGAACACCCTCTGGCACTGGCCAGGATGAGGAGCCATCAACCTCCTCAGCCACACAGGTGTTTTCACAAATGTTGTctgaggatgaggatgaagaaCCATTTGCTTCCACTTCTCCCCAGCAGGATTCttcagAAATGCCTGTAGCAGCATCCTCACCAaatcctgctgctgaggatgaaccactgtctacagacacTGCTGACTGGCCATCAGTTCTAACTGACAGAATTCGGACACAGCTAGTTTGCAGAGGACCAAGTGAGGTACCACCTAACATTGTTTTCCCAAGGAATGAGAGTGATGAAAAAAGTTGGTTGGTGTAATCTGAAAGAAACAACAGCCTCTTCTGCTTCTGCTGTAAACTATTTTCTAAGAATAAAATTAATTTAGCAAACTCAGGACTGACAGACTGGAAACATGCAAGCTCTTTGCTGACTTCACTTTGCTGACTTCACTAGGGACTtccactgctatgcggatgacacacagctgtacatttcaatgaaacatggtgaagc

Function

NR:

description
PREDICTED: zinc finger MYM-type protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034350.1 True 629 mRNA 0.44 3 28143313 28144703

Neighbor

gene id symbol gene type direction distance location
LOC110533593 LOC106603472 coding upstream 139298 27991680 ~ 28004015 (+)
LOC110533592 LOC106568026 coding upstream 254406 27880392 ~ 27888907 (+)
ppm1e ppm1e coding upstream 646576 27409651 ~ 27496872 (+)
LOC110533582 rad51c coding upstream 746595 27366588 ~ 27396718 (+)
LOC110533584 ska2 coding upstream 812729 27309669 ~ 27330584 (+)
LOC110533598 LOC106603479 coding downstream 18091 28162794 ~ 28171287 (+)
LOC110534879 LOC106603480 coding downstream 158211 28302914 ~ 28321189 (+)
LOC110533601 LOC106603421 coding downstream 234726 28379429 ~ 28388942 (+)
LOC110533603 LOC106603482 coding downstream 249492 28394195 ~ 28412922 (+)
LOC110533604 LOC106603483 coding downstream 274620 28419323 ~ 28543267 (+)
G874133 NA non-coding upstream 1577 28141485 ~ 28141736 (+)
G874127 NA non-coding upstream 8294 28134813 ~ 28135019 (+)
G874096 NA non-coding upstream 59026 28084033 ~ 28084287 (+)
G873759 NA non-coding upstream 63428 28055071 ~ 28079885 (+)
G873754 NA non-coding upstream 93328 28049694 ~ 28049985 (+)
G874286 NA non-coding downstream 100559 28245262 ~ 28245462 (+)
G874406 NA non-coding downstream 297194 28441897 ~ 28442894 (+)
G874431 NA non-coding downstream 378688 28523391 ~ 28524965 (+)
G874108 pgk other upstream 25953 28089906 ~ 28117360 (+)
ap2b1 ap2b1 other upstream 874519 27177610 ~ 27268794 (+)
LOC110534876 LOC106603451 other upstream 1284210 26848371 ~ 26860066 (+)
ypel2a LOC106603438 other upstream 2046513 26079908 ~ 26096800 (+)
G874438 LOC106603484 other downstream 411837 28556540 ~ 28557644 (+)
G874378 NA other downstream 432749 28577452 ~ 28584415 (+)
G874510 NA other downstream 583071 28727774 ~ 28738905 (+)
G874876 NA other downstream 685069 28829772 ~ 28830164 (+)

Expression


Co-expression Network