LOC110533600 (LOC106603481)


Basic Information

Item Value
gene id LOC110533600
gene name LOC106603481
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 28361976 ~ 28379362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990017.1
TGAAAGATTAACTGAGTTTGGTCAGTCATCGTGGTAACTATAAAAGTTAAATGATAATCGCcctataaagtccaaagaagaaaaagcatGAAGGATAGCTGACTAGAAACGATaaggttgaccgttttatgtgtggattaattgtagGAGTAGAGGAGCTTgtacatttcagTAAACAAAATGATAAAGGAGAATGGTGACCTGTTTTCTGATGCCCTGTGCAAAATCTGCAGTGCTGTCCTGAATTCTGACTCCCAGAAACTTGCACATTATCAGAGCAAAAAGCATGCCAACAAAGTGAGACGCTACATGAGCATCCACAAAGAAGAGGAGCCCACCATCAAAAGGTTCAAGTCGCCTTCGGGAGACAGTGCCAGCAGTAATGGCGAGACGGACCGCTCCAAAGCCTGTCATATATGTAACATGACATTCTCCTCTCCGGTGGTGGCTGAGTCCCACTACCAGGGCAAGGTGCACACCAAGAACCTGAGACTGAAGACCTTTGGCAACCAGACCCCAGTAGCACTACCTCAGGCCGTGGCCCCAGTGgtgaaaaagaagaagaagaagaaggaggctCAGTCAGAGGAGGCTAGCAACGTGGCATCGTCAGCCCCGGCCGAGGACGACCAGGGCAACTTCTGTTCCATCTGCCATGCCTCGTTCAACAACCCCCTCATGGCCAAGCAGCACTACGAAGGCAAGAAGCATAAAAAACAGCTGACCCAGCAGAAGCTTATGGAGACCTATGGGCCATCCACTGCACCAGCTTCCACAGTAAAGGGCTACCCATGTACTGTATGCAACATCGAACTGAACTCTGTGGAACAGTATCAGGCACACATCAGTGGCTCCAAACATAAGAACcatGTCAGAGGCAAGAAAGCGAGCAGCCCGATGTTCATCGGCCCATCGGAAAACAAGTACACAGCAGAAAACCAGCAGTCAGAGTACCAGTATACACCTGAATTCGAACCAGTACAGGAGGACTGGGGTGCTTTCAGCCAAGATTACGAGTGACGAGCCTCCCAGTACCCCCCACCAACACCACAGTTCCCTCAGCTAGGGCCAGAAGGATCACCTGACCAGGAAAAGCTCTAGGTCCTTGTTACAATACAGGTTACAACTAGGatccagagtttttttttttttttttcttcttcccttGTTCATGTCAGGAAAAATCCCTGGACAGAGGGCAGCCTATATGTGGTGTTCTTTCTGTGGTGTTGTATCTGCCTCATGGATGAATCTCAACTCCAGCTCTATATCATTCTGTCTACTCCATGTCTAAATCCCAGTACATGttcactaccggtcaaaagttttagaacacctactcattcaaggggttttctttatttttactctttctacattgtagaataatactgaagacatcaaaactatgaaataacac
>XM_021617974.2
ACCTCGTTTTTCCCgatttccagttgtcttgaaagctaGCTCTTTGGTGTCGTCACGATTACGCATGTGCCCGCTGCTGCTGACACGACAGAAAACATGGCGCTCGAGGAACCAAATGGAGATTTTCCATATTTACCTTCAGGGGTGGCGGAGGTAAACAAAATGATAAAGGAGAATGGTGACCTGTTTTCTGATGCCCTGTGCAAAATCTGCAGTGCTGTCCTGAATTCTGACTCCCAGAAACTTGCACATTATCAGAGCAAAAAGCATGCCAACAAAGTGAGACGCTACATGAGCATCCACAAAGAAGAGGAGCCCACCATCAAAAGGTTCAAGTCGCCTTCGGGAGACAGTGCCAGCAGTAATGGCGAGACGGACCGCTCCAAAGCCTGTCATATATGTAACATGACATTCTCCTCTCCGGTGGTGGCTGAGTCCCACTACCAGGGCAAGGTGCACACCAAGAACCTGAGACTGAAGACCTTTGGCAACCAGACCCCAGCACTACCTCAGGCCGTGGCCCCAGTGgtgaaaaagaagaagaagaagaaggaggctCAGTCAGAGGAGGCTAGCAACGTGGCATCGTCAGCCCCGGCCGAGGACGACCAGGGCAACTTCTGTTCCATCTGCCATGCCTCGTTCAACAACCCCCTCATGGCCAAGCAGCACTACGAAGGCAAGAAGCATAAAAAACAGCTGACCCAGCAGAAGCTTATGGAGACCTATGGGCCATCCACTGCACCAGCTTCCACAGTAAAGGGCTACCCATGTACTGTATGCAACATCGAACTGAACTCTGTGGAACAGTATCAGGCACACATCAGTGGCTCCAAACATAAGAACcatGTCAGAGGCAAGAAAGCGAGCAGCCCGATGTTCATCGGCCCATCGGAAAACAAGTACACAGCAGAAAACCAGCAGTCAGAGTACCAGTATACACCTGAATTCGAACCAGTACAGGAGGACTGGGGTGCTTTCAGCCAAGATTACGAGTGACGAGCCTCCCAGTACCCCCCACCAACACCACAGTTCCCTCAGCTAGGGCCAGAAGGATCACCTGACCAGGAAAAGCTCTAGGTCCTTGTTACAATACAGGTTACAACTAGGatccagagtttttttttttttttttcttcttcccttGTTCATGTCAGGAAAAATCCCTGGACAGAGGGCAGCCTATATGTGGTGTTCTTTCTGTGGTGTTGTATCTGCCTCATGGATGAATCTCAACTCCAGCTCTATATCATTCTGTCTACTCCATGTCTAAATCCCAGTACATGttcactaccggtcaaaagttttagaacacctactcattcaaggggttttctttatttttactctttctacattgtagaataatactgaagacatcaaaactatgaaataacac
>XM_036990015.1
tcggaattccaaatcGGGGAACTCTAACCTCTTTCTAAACCTAAAGCTCAGACTTTCCGTCCTGACGTCATGATTTTACCTCGTTTTTCCCgatttccagttgtcttgaaagctaGCTCTTTGGTGTCGTCACGATTACGCATGTGCCCGCTGCTGCTGACACGACAGAAAACATGGCGCTCGAGGAACCAAATGGAGATTTTCCATATTTACCTTCAGGGGTGGCGGAGGTAAACAAAATGATAAAGGAGAATGGTGACCTGTTTTCTGATGCCCTGTGCAAAATCTGCAGTGCTGTCCTGAATTCTGACTCCCAGAAACTTGCACATTATCAGAGCAAAAAGCATGCCAACAAAGTGAGACGCTACATGAGCATCCACAAAGAAGAGGAGCCCACCATCAAAAGGTTCAAGTCGCCTTCGGGAGACAGTGCCAGCAGTAATGGCGAGACGGACCGCTCCAAAGCCTGTCATATATGTAACATGACATTCTCCTCTCCGGTGGTGGCTGAGTCCCACTACCAGGGCAAGGTGCACACCAAGAACCTGAGACTGAAGACCTTTGGCAACCAGACCCCAGTAGCACTACCTCAGGCCGTGGCCCCAGTGgtgaaaaagaagaagaagaagaaggaggctCAGTCAGAGGAGGCTAGCAACGTGGCATCGTCAGCCCCGGCCGAGGACGACCAGGGCAACTTCTGTTCCATCTGCCATGCCTCGTTCAACAACCCCCTCATGGCCAAGCAGCACTACGAAGGCAAGAAGCATAAAAAACAGCTGACCCAGCAGAAGCTTATGGAGACCTATGGGCCATCCACTGCACCAGCTTCCACAGTAAAGGGCTACCCATGTACTGTATGCAACATCGAACTGAACTCTGTGGAACAGTATCAGGCACACATCAGTGGCTCCAAACATAAGAACcatGTCAGAGGCAAGAAAGCGAGCAGCCCGATGTTCATCGGCCCATCGGAAAACAAGTACACAGCAGAAAACCAGCAGTCAGAGTACCAGTATACACCTGAATTCGAACCAGTACAGGAGGACTGGGGTGCTTTCAGCCAAGATTACGAGTGACGAGCCTCCCAGTACCCCCCACCAACACCACAGTTCCCTCAGCTAGGGCCAGAAGGATCACCTGACCAGGAAAAGCTCTAGGTCCTTGTTACAATACAGGTTACAACTAGGatccagagtttttttttttttttttcttcttcccttGTTCATGTCAGGAAAAATCCCTGGACAGAGGGCAGCCTATATGTGGTGTTCTTTCTGTGGTGTTGTATCTGCCTCATGGATGAATCTCAACTCCAGCTCTATATCATTCTGTCTACTCCATGTCTAAATCCCAGTACATGttcactaccggtcaaaagttttagaacacctactcattcaaggggttttctttatttttactctttctacattgtagaataatactgaagacatcaaaactatgaaataacac
>XM_036990016.1
ATTAGAGTAAGCAAACATGCAAGTAAACAAAATGATAAAGGAGAATGGTGACCTGTTTTCTGATGCCCTGTGCAAAATCTGCAGTGCTGTCCTGAATTCTGACTCCCAGAAACTTGCACATTATCAGAGCAAAAAGCATGCCAACAAAGTGAGACGCTACATGAGCATCCACAAAGAAGAGGAGCCCACCATCAAAAGGTTCAAGTCGCCTTCGGGAGACAGTGCCAGCAGTAATGGCGAGACGGACCGCTCCAAAGCCTGTCATATATGTAACATGACATTCTCCTCTCCGGTGGTGGCTGAGTCCCACTACCAGGGCAAGGTGCACACCAAGAACCTGAGACTGAAGACCTTTGGCAACCAGACCCCAGTAGCACTACCTCAGGCCGTGGCCCCAGTGgtgaaaaagaagaagaagaagaaggaggctCAGTCAGAGGAGGCTAGCAACGTGGCATCGTCAGCCCCGGCCGAGGACGACCAGGGCAACTTCTGTTCCATCTGCCATGCCTCGTTCAACAACCCCCTCATGGCCAAGCAGCACTACGAAGGCAAGAAGCATAAAAAACAGCTGACCCAGCAGAAGCTTATGGAGACCTATGGGCCATCCACTGCACCAGCTTCCACAGTAAAGGGCTACCCATGTACTGTATGCAACATCGAACTGAACTCTGTGGAACAGTATCAGGCACACATCAGTGGCTCCAAACATAAGAACcatGTCAGAGGCAAGAAAGCGAGCAGCCCGATGTTCATCGGCCCATCGGAAAACAAGTACACAGCAGAAAACCAGCAGTCAGAGTACCAGTATACACCTGAATTCGAACCAGTACAGGAGGACTGGGGTGCTTTCAGCCAAGATTACGAGTGACGAGCCTCCCAGTACCCCCCACCAACACCACAGTTCCCTCAGCTAGGGCCAGAAGGATCACCTGACCAGGAAAAGCTCTAGGTCCTTGTTACAATACAGGTTACAACTAGGatccagagtttttttttttttttttcttcttcccttGTTCATGTCAGGAAAAATCCCTGGACAGAGGGCAGCCTATATGTGGTGTTCTTTCTGTGGTGTTGTATCTGCCTCATGGATGAATCTCAACTCCAGCTCTATATCATTCTGTCTACTCCATGTCTAAATCCCAGTACATGttcactaccggtcaaaagttttagaacacctactcattcaaggggttttctttatttttactctttctacattgtagaataatactgaagacatcaaaactatgaaataacac

Function

NR:

description
zinc finger protein 346-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990017.1 False 1420 mRNA 0.47 7 28361976 28367614
XM_021617974.2 False 1399 mRNA 0.48 7 28361976 28368541
XM_036990015.1 False 1479 mRNA 0.48 7 28361976 28368618
XM_036990016.1 True 1271 mRNA 0.48 7 28361976 28379362
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110533599 LOC106603477 coding downstream 144847 28171634 ~ 28217129 (-)
LOC110533597 LOC106603476 coding downstream 209689 28149090 ~ 28152287 (-)
LOC110533596 LOC106603475 coding downstream 231711 28128521 ~ 28130265 (-)
LOC110533595 pgk coding downstream 244580 28089899 ~ 28117396 (-)
LOC110533594 LOC105011118 coding downstream 296183 28010251 ~ 28065793 (-)
LOC110533602 NA coding upstream 9727 28388354 ~ 28399671 (-)
LOC110533605 LOC106603484 coding upstream 170101 28549463 ~ 28560015 (-)
LOC110533606 LOC106603485 coding upstream 200071 28579433 ~ 28624349 (-)
arl10 LOC106603486 coding upstream 264207 28643569 ~ 28648218 (-)
LOC110533612 LOC106603488 coding upstream 352441 28731803 ~ 28815504 (-)
G874592 NA non-coding downstream 55955 28303011 ~ 28306021 (-)
G874278 NA non-coding downstream 126273 28235407 ~ 28235703 (-)
G874277 NA non-coding downstream 126781 28234956 ~ 28235195 (-)
G874265 NA non-coding downstream 138390 28223379 ~ 28223586 (-)
G874237 NA non-coding downstream 190692 28169421 ~ 28171284 (-)
G874635 NA non-coding upstream 17357 28396719 ~ 28399355 (-)
G874707 NA non-coding upstream 164333 28543695 ~ 28546427 (-)
G874741 NA non-coding upstream 194625 28573987 ~ 28574203 (-)
G874765 NA non-coding upstream 250651 28630013 ~ 28630301 (-)
G873784 LOC106573797 other downstream 777714 27582929 ~ 27584262 (-)
LOC110533580 tex14 other downstream 1008730 27330589 ~ 27366556 (-)
G873209 orai2 other downstream 1197426 27162900 ~ 27164550 (-)
LOC110533569 LOC106567674 other downstream 1450350 26890009 ~ 26911668 (-)
G866654 NA other downstream 6538355 21819111 ~ 21823621 (-)
G874706 NA other upstream 160867 28540229 ~ 28543267 (-)
G875194 NA other upstream 561878 28941240 ~ 28985070 (-)
LOC110533621 NA other upstream 1536005 29906094 ~ 29922728 (-)
G878962 NA other upstream 3068120 31447482 ~ 31449163 (-)
G879440 LOC106603524 other upstream 3846070 32225432 ~ 32225936 (-)

Expression

LOC110533600(LOC106603481) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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LOC110533600(LOC106603481) Expression in each Bioproject

Bar chart with 21 bars.
LOC110533600(LOC106603481) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network