Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110533602 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 28388354 ~ 28399671 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| BRCA1-A complex subunit RAP80-like isoform X3 |
| id | name | namespace |
|---|---|---|
| GO:0046835 | carbohydrate phosphorylation | biological_process |
| GO:0006096 | glycolytic process | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004396 | hexokinase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002474999.2 | False | 1545 | mRNA | 0.42 | 2 | 28389089 | 28393110 |
| TU995662 | True | 487 | lncRNA | 0.47 | 4 | 28388354 | 28399671 |
28,386,000
28,388,000
28,390,000
28,392,000
28,394,000
28,396,000
28,398,000
28,400,000
28,402,000
28,404,000
28,406,000
28,408,000
28,410,000
28,412,000
NC_048574.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110533600 | LOC106603481 | coding | downstream | 9727 | 28361976 ~ 28379362 (-) |
| LOC110533599 | LOC106603477 | coding | downstream | 171960 | 28171634 ~ 28217129 (-) |
| LOC110533597 | LOC106603476 | coding | downstream | 236802 | 28149090 ~ 28152287 (-) |
| LOC110533596 | LOC106603475 | coding | downstream | 258824 | 28128521 ~ 28130265 (-) |
| LOC110533595 | pgk | coding | downstream | 271693 | 28089899 ~ 28117396 (-) |
| LOC110533605 | LOC106603484 | coding | upstream | 156353 | 28549463 ~ 28560015 (-) |
| LOC110533606 | LOC106603485 | coding | upstream | 186323 | 28579433 ~ 28624349 (-) |
| arl10 | LOC106603486 | coding | upstream | 250459 | 28643569 ~ 28648218 (-) |
| LOC110533612 | LOC106603488 | coding | upstream | 338693 | 28731803 ~ 28815504 (-) |
| LOC110533613 | LOC106603489 | coding | upstream | 515281 | 28908391 ~ 29166800 (-) |
| G874626 | NA | non-coding | downstream | 2990 | 28364585 ~ 28386099 (-) |
| G874592 | NA | non-coding | downstream | 83068 | 28303011 ~ 28306021 (-) |
| G874278 | NA | non-coding | downstream | 153386 | 28235407 ~ 28235703 (-) |
| G874277 | NA | non-coding | downstream | 153894 | 28234956 ~ 28235195 (-) |
| G874265 | NA | non-coding | downstream | 165503 | 28223379 ~ 28223586 (-) |
| G874635 | NA | non-coding | upstream | 3609 | 28396719 ~ 28399355 (-) |
| G874707 | NA | non-coding | upstream | 150585 | 28543695 ~ 28546427 (-) |
| G874741 | NA | non-coding | upstream | 180877 | 28573987 ~ 28574203 (-) |
| G874765 | NA | non-coding | upstream | 236903 | 28630013 ~ 28630301 (-) |
| G874748 | NA | non-coding | upstream | 249188 | 28642298 ~ 28643496 (-) |
| G873784 | LOC106573797 | other | downstream | 804827 | 27582929 ~ 27584262 (-) |
| LOC110533580 | tex14 | other | downstream | 1035843 | 27330589 ~ 27366556 (-) |
| G873209 | orai2 | other | downstream | 1224539 | 27162900 ~ 27164550 (-) |
| LOC110533569 | LOC106567674 | other | downstream | 1477463 | 26890009 ~ 26911668 (-) |
| G866654 | NA | other | downstream | 6565468 | 21819111 ~ 21823621 (-) |
| G874706 | NA | other | upstream | 147119 | 28540229 ~ 28543267 (-) |
| G875194 | NA | other | upstream | 548130 | 28941240 ~ 28985070 (-) |
| LOC110533621 | NA | other | upstream | 1522257 | 29906094 ~ 29922728 (-) |
| G878962 | NA | other | upstream | 3054372 | 31447482 ~ 31449163 (-) |
| G879440 | LOC106603524 | other | upstream | 3832322 | 32225432 ~ 32225936 (-) |
| G874749 | NA | non-coding | upstream | 244403 | 28644074 ~ 28644930 (-) |
