Item | Value |
---|---|
gene id | LOC110533610 |
gene name | wwc1 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048574.1 |
NCBI id | CM023228.2 |
chromosome length | 87811138 |
location | 28648562 ~ 28693892 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
wwc1 | Predicted to enable kinase binding activity and molecular adaptor activity. Acts upstream of or within otic vesicle development and otolith formation. Predicted to be active in cytoplasm. Orthologous to human WWC1 (WW and C2 domain containing 1). |
description |
---|
protein KIBRA-like isoform X1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036990025.1 | False | 6260 | mRNA | 0.50 | 23 | 28648562 | 28693892 |
XM_036990024.1 | False | 5711 | mRNA | 0.51 | 24 | 28648567 | 28693892 |
XM_036990023.1 | False | 6271 | mRNA | 0.50 | 23 | 28648569 | 28693892 |
XM_021617997.2 | False | 5600 | mRNA | 0.51 | 23 | 28648584 | 28693892 |
XM_021617999.2 | True | 6162 | mRNA | 0.50 | 22 | 28648584 | 28693892 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110533607 | LOC106603487 | coding | upstream | 6848 | 28635794 ~ 28641714 (+) |
LOC110533604 | LOC106603483 | coding | upstream | 105295 | 28419323 ~ 28543267 (+) |
LOC110533603 | LOC106603482 | coding | upstream | 235640 | 28394195 ~ 28412922 (+) |
LOC110533601 | LOC106603421 | coding | upstream | 259620 | 28379429 ~ 28388942 (+) |
LOC110534879 | LOC106603480 | coding | upstream | 327373 | 28302914 ~ 28321189 (+) |
rars1 | syrc | coding | downstream | 5481 | 28699373 ~ 28729367 (+) |
LOC118936921 | NA | coding | downstream | 537659 | 29231527 ~ 29240203 (+) |
gemin5 | LOC106603490 | coding | downstream | 812381 | 29506273 ~ 29525563 (+) |
LOC118966731 | NA | coding | downstream | 892560 | 29586452 ~ 29629500 (+) |
LOC110533617 | LOC106603494 | coding | downstream | 989383 | 29683275 ~ 29785295 (+) |
G874485 | NA | non-coding | upstream | 457 | 28647658 ~ 28648105 (+) |
G874472 | NA | non-coding | upstream | 3563 | 28643622 ~ 28644999 (+) |
G874476 | NA | non-coding | upstream | 15120 | 28633148 ~ 28633442 (+) |
G874475 | NA | non-coding | upstream | 15635 | 28632580 ~ 28632927 (+) |
G874469 | NA | non-coding | upstream | 19052 | 28629254 ~ 28629510 (+) |
G874508 | NA | non-coding | downstream | 31775 | 28725667 ~ 28726125 (+) |
G874858 | NA | non-coding | downstream | 124781 | 28818673 ~ 28819552 (+) |
G874928 | NA | non-coding | downstream | 197441 | 28891333 ~ 28891720 (+) |
G874931 | NA | non-coding | downstream | 199562 | 28893454 ~ 28893795 (+) |
G874985 | NA | non-coding | downstream | 284467 | 28978359 ~ 28979023 (+) |
G874378 | NA | other | upstream | 64147 | 28577452 ~ 28584415 (+) |
G874438 | LOC106603484 | other | upstream | 90918 | 28556540 ~ 28557644 (+) |
LOC110533598 | LOC106603479 | other | upstream | 478309 | 28162794 ~ 28171287 (+) |
G874108 | pgk | other | upstream | 531202 | 28089906 ~ 28117360 (+) |
ppm1e | ppm1e | other | upstream | 1151690 | 27409651 ~ 27496872 (+) |
G874510 | NA | other | downstream | 33882 | 28727774 ~ 28738905 (+) |
G874876 | NA | other | downstream | 135880 | 28829772 ~ 28830164 (+) |
G875756 | LOC106603491 | other | downstream | 852747 | 29546639 ~ 29547275 (+) |
G875776 | NA | other | downstream | 887234 | 29581126 ~ 29582530 (+) |
LOC110533619 | LOC106603497 | other | downstream | 1225384 | 29919276 ~ 29986082 (+) |