LOC118936921


Basic Information

Item Value
gene id LOC118936921
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 29231527 ~ 29240203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034351.1
CATGAACATGGAGCCTTCTGCTGAGAACATAAGCCCAGAGGAGCAGGAGATGATTCAGCTGGCAGAGGATGCAGAGAGGAGTGCAGAGTGCCTGAGGCCTTAGGACCATGGATGAGAGCTGTTACTGCCTCCTTTTGGATCTGCTTTCCTCTTTCCCTGCCAACATCAGGATGCTAAACTACAATACCACCACCACATATGGGCGGCCCTTATTTTGTCAGCAAACCCTATTCTTTCATACTTTGAGTTCCTTACTTGACCATAACTGTTATGGAATATTTGTTAACTGTTTTGAGTGCATAGGATTTCCCACATTTTGCCAAACCAATTGAGACATTTGTAATAAACTTGTA
>TU996464
AGCACAGAATTTTATGCCGCACTACATGAACATGGAGCCTTCTGCTGAGAACATAAGCCCAGAGGAGCAGGAGATGATTCAGCTGGCAGAGGATGCAGAGAGGAGTGCAGAGTGCCTGAGGCCTTAGGACCATGGATGAGAGCTGTTACTGCCTCCTTTTGGATCTGCTTTCCTCTTTCCCTGCCAACATCAGGATGCTAAACTACAATACCACCACCACATATGGGCGGCCCTTATTTTGTCAGCAAACCCTATTCTTTCATACTTTGAGTTCCTTACTTGACCATAACTGTTATGGAATATTTGTTAACTGTTTTGAGTGCATAGGATTTCCCACATTTTGCCAAACCAATTGAGACATTTGTAATAAACTTGTATTTCACCACA
>TU996463
CTGCTGGGTTGGAACAACATGCTCAAACATCTCCGAGACCAGTAATAATAAGAATCCCTGATTTACTGGTGACCAAAGACATGTTTTAATTGCAGAGAACATAAGCCCAGAGGAGCAGGAGATGATTCAGCTGGCAGAGGATGCAGAGAGGAGTGCAGAGTGCCTGAGGCCTTAGGACCATGGATGAGAGCTGTTACTGCCTCCTTTTGGATCTGCTTTCCTCTTTCCCTGCCAACATCAGGATGCTAAACTACAATACCACCACCACATATGGGCGGCCCTTATTTTGTCAGCAAACCCTATTCTTTCATACTTTGAGTTCCTTACTTGACCATAACTGTTATGGAATATTTGTTAACTGTTTTGAGTGCATAGGATTTCCCACATTTTGCCAAACCAATTGAGACATTTGTAATAAACTTGTATTTCACCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034351.1 False 353 mRNA 0.44 3 29231551 29240193
TU996464 False 387 lncRNA 0.44 3 29231527 29240203
TU996463 True 435 lncRNA 0.43 2 29232094 29240203

Neighbor

gene id symbol gene type direction distance location
rars1 syrc coding upstream 502184 28699373 ~ 28729367 (+)
LOC110533610 wwc1 coding upstream 537659 28648562 ~ 28693892 (+)
LOC110533607 LOC106603487 coding upstream 589837 28635794 ~ 28641714 (+)
LOC110533604 LOC106603483 coding upstream 688284 28419323 ~ 28543267 (+)
LOC110533603 LOC106603482 coding upstream 818629 28394195 ~ 28412922 (+)
gemin5 LOC106603490 coding downstream 266080 29506273 ~ 29525563 (+)
LOC118966731 NA coding downstream 346259 29586452 ~ 29629500 (+)
LOC110533617 LOC106603494 coding downstream 443082 29683275 ~ 29785295 (+)
LOC110533618 LOC106603495 coding downstream 564079 29804272 ~ 29836898 (+)
LOC100653448 flt2 coding downstream 603828 29844021 ~ 29881548 (+)
G875123 NA non-coding upstream 50615 29180733 ~ 29180936 (+)
G875119 NA non-coding upstream 55279 29175960 ~ 29176272 (+)
G875118 NA non-coding upstream 57432 29173919 ~ 29174119 (+)
G875115 NA non-coding upstream 63333 29167952 ~ 29168218 (+)
G874985 NA non-coding upstream 252528 28978359 ~ 28979023 (+)
G875615 NA non-coding downstream 154401 29394594 ~ 29394829 (+)
G875619 NA non-coding downstream 158128 29398321 ~ 29398575 (+)
G875624 NA non-coding downstream 159915 29400108 ~ 29400311 (+)
G875625 NA non-coding downstream 161788 29401981 ~ 29402293 (+)
G875702 NA non-coding downstream 220219 29460412 ~ 29460709 (+)
G874876 NA other upstream 401387 28829772 ~ 28830164 (+)
G874510 NA other upstream 492646 28727774 ~ 28738905 (+)
G874378 NA other upstream 647136 28577452 ~ 28584415 (+)
G874438 LOC106603484 other upstream 673907 28556540 ~ 28557644 (+)
LOC110533598 LOC106603479 other upstream 1061298 28162794 ~ 28171287 (+)
G875756 LOC106603491 other downstream 306446 29546639 ~ 29547275 (+)
G875776 NA other downstream 340933 29581126 ~ 29582530 (+)
LOC110533619 LOC106603497 other downstream 679083 29919276 ~ 29986082 (+)
G876079 ubb other downstream 780448 30020641 ~ 30050053 (+)
LOC110533629 LOC106603502 other downstream 780898 30021091 ~ 30022290 (+)

Expression


Co-expression Network