LOC118966731


Basic Information

Item Value
gene id LOC118966731
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 29586452 ~ 29629500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053611.1
CTCGGTTACTGCCGATGTGGCATTTTGTGTCCCTTGTCGAAAGTTCTGTGTTGGGTCCAATGCTAACACAGACAAGGCCTTCACTCAAGCTGGGTATTCTAACTGGAAGAATAACATTGATAGTACCAAAGGATTTGATGCACAGGCTCCAAGCAAATTATGACCTTATGTAACGACAAATCTCCAGCAATATGTAGTGGACAGTACAgtaaggacagaggaggagagactgagTATAAAATAATGTTCTTCAGCACGTTGGGATGCTGTCAATGGTGAAATGTCCTGCAATGATTCTCTGGGCCTGTCTTCGCTATGCCGACCGTGCTTACTGCACTGAAACACTTTTGGGCCATCCACTGGTACATGCGAGAACTCATTTTCCACTTTGACAAACATGTTCAGTCAACACAGAAGAAGCATGCTACACCCAAGGAAAGCTCAACTAATCCAACTGGCATTTGAGGGGGATCTTACCAGAAGATTTCAGGGAGAATTGAATGATTGATTACTCAGGAAGTTCAACAGAACATCAAGGAGGCTGCAACTCTTTCGAAAAgGCCACCGCCCAGCAGTTGATCCGGCGCGCACAGTGTCTTGGGAGGGCAAGCAGtggAGGACATGGCATCTCTACATTGGTCCATGTAGAGAGGAGCTAGCTGCAGAAGAGTGCTGTGGAGCTACAGGGCACGGATGTACCAGGGTCTCTCTTCATCATCAACCACTGGGTGGACACGGGTTTGACAGGATCACTGGCAGCAATACTAGCAACCTTCCCTCAGGGTCACATCAATGCTCTCCTCCACTAAAATAGAAACACCTACAGAATCCTAAACCGCTCCCAATGCAATCCAATGCGTTGGGAATATCCTTTAACTACACCAAGCCAAGTGACACAAAATGCACTGAGAAATATGAGAAAGTGGAGCATGTCTCTAGTATCTCTGTTAACTTCCCCCTGCTGGCTATCTGTTGCTTCCCGTAATAAACTGGGAGATTATGAGCAGGCCAGATGTGGAGAGGGAACATTCTCCTCCGGGCTGGGACCTATGTAGGCCACTGACTGAGAGTACTGACTGGAGCTCAACCAACCTCTCTTCTGAATGTCTTATCTGGGGGGAACAAATACCAACACATTTTGGATGCATGTGTGATGTGTagggacaggaggttttcctGAGTATGAAAGGGAAAAGCTTGGCCCTAATGATGTACAGTATCTAGTCATAGAGGGGGTCTGGCATGGGTGAATACTGTAGATGGGATGGAGATTGTGCTGACTTATATCATGCTGACAATAGACATCTCTCATTACTAAACATTGATATGTCCACAGTTATTTGTGATAGTTAGTATTGTTGTGTCAGTCTATTTTGAGCACTGAGAAGCAACTCTTGAGGCATTTCTTGTTCTCGATATTCCATTAGTCGAACAGACATGAACCTTCTACGATGTTTACCACATACTGTGTATGAGAGCTCCCAATAAACTAAATTGGGGTTCTTTCTTTTTCCAGAGGCTCCTTCAGACGTTTTAGTTGCATCCTTTCAAGAACCTTGTTTTGGTTCGTCTAATCTCTTTGATGATCAAAtataataaaattg

Function

NR:

description
PREDICTED: uncharacterized protein LOC108249465

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053611.1 True 1604 mRNA 0.45 3 29586452 29629500

Neighbor

gene id symbol gene type direction distance location
gemin5 LOC106603490 coding upstream 60889 29506273 ~ 29525563 (+)
LOC118936921 NA coding upstream 346259 29231527 ~ 29240203 (+)
rars1 syrc coding upstream 857085 28699373 ~ 28729367 (+)
LOC110533610 wwc1 coding upstream 892560 28648562 ~ 28693892 (+)
LOC110533607 LOC106603487 coding upstream 944738 28635794 ~ 28641714 (+)
LOC110533617 LOC106603494 coding downstream 53775 29683275 ~ 29785295 (+)
LOC110533618 LOC106603495 coding downstream 174772 29804272 ~ 29836898 (+)
LOC100653448 flt2 coding downstream 214521 29844021 ~ 29881548 (+)
LOC110533623 NA coding downstream 259799 29889260 ~ 29917633 (+)
LOC110533619 LOC106603497 coding downstream 292553 29919276 ~ 29986082 (+)
G875740 NA non-coding upstream 82101 29503878 ~ 29504351 (+)
G875736 NA non-coding upstream 88651 29497592 ~ 29497801 (+)
G875735 NA non-coding upstream 89202 29497025 ~ 29497250 (+)
G875703 NA non-coding upstream 125134 29460989 ~ 29461318 (+)
G875702 NA non-coding upstream 125743 29460412 ~ 29460709 (+)
G875955 NA non-coding downstream 24388 29653888 ~ 29654160 (+)
G875962 NA non-coding downstream 29438 29658938 ~ 29659300 (+)
G875972 NA non-coding downstream 34622 29664122 ~ 29664327 (+)
G876014 NA non-coding downstream 72745 29702245 ~ 29702508 (+)
G876016 NA non-coding downstream 75669 29705169 ~ 29705437 (+)
G875776 NA other upstream 3922 29581126 ~ 29582530 (+)
G875756 LOC106603491 other upstream 39177 29546639 ~ 29547275 (+)
G874876 NA other upstream 756288 28829772 ~ 28830164 (+)
G874510 NA other upstream 847547 28727774 ~ 28738905 (+)
G874378 NA other upstream 1002037 28577452 ~ 28584415 (+)
G876079 ubb other downstream 391141 30020641 ~ 30050053 (+)
LOC110533629 LOC106603502 other downstream 391591 30021091 ~ 30022290 (+)
LOC110533640 LOC106603515 other downstream 1119006 30748439 ~ 30771331 (+)
G877809 NA other downstream 1575583 31205083 ~ 31205418 (+)

Expression


Co-expression Network