LOC110533618 (LOC106603495)


Basic Information

Item Value
gene id LOC110533618
gene name LOC106603495
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 29804272 ~ 29836898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618017.2
TTTAAACCCGAGCGCAGGGTTTCCGCACTGTGCTTTTTCCTGGATGCTACGAAAACAATATAAGGGAGGGTTGACTCGTGTAACAGACCGCCCCATATAAACAAGTAACTGTTATGTCTATTGTGACTGTTCAACAGACATAGGTAAACGAAATCTGTCGTTTTACTACGACAGTTTtgaaaactagctagctagtcttTGTAATAGCCAAATAATCAATTGAAATGGAGCGGTGGAAAGGCAGAGTAGCTCTCGTGACTGGAGCCTCGGTCGGGATTGGAGCGGCTGTTGCACGGGCACTTGTCCAACACGGCATGAAGGTTGTGGGATGTGCCAGGAATGTTGACAAGATAGAGAAGCTGGCAGCAGAGTGCCAGAGTGCGGGCTACAACGGTACGCTGATCCCCTATAAGTGTGACCTGTCCTGTGAGGAGGACATCCTGTCCATGTTCTCTGCCATCAAGACGCTGCACCAGGGGGTGGACGTGTGTATCAACAATGCAGGCCTGGCCCACAATGAACCCCTGCTCAGTGGCAAGACAGACAGCTGGAGGAACATGATCGACGTGAATGTCCTGGCCTTGTCTATTTGTACACGTGAGGCCTACCAGTCAATGAAAGAGCGGAATGTGGACGATGGCCACATCATCAATATTAACAGTATGGGGGGACATAGAATGGTACCTAGTGCAGATGAACATTTCTACTGTGCCACAAAATATGCTGTGACTGCTCTAACCGAGGGGCTGCGGCAAGAGCTACGGGAAGCAAAGACCCACATCAGAGCCACGTGTATATCCCCTGGAATAGTGGAGACTGAGTTTGCCTTCCGGCACCACAACAGCGATCCAGAGAAAGCAGCTGCTGTGTATGAGAGTATAAAATGTTTGAAAGCACAAGACATAGCCAGTGCAGTCACATACATTCTGGGCGCCCCGCCTCATGTCCAGATCGGAGATGTGCAGATGAGGCCGGTGGAACAGATGTCATAGCAACAGAGCAGGAAGTTAAGCAACTGGAGGAGCCGATAGAGCCAGACAGCAAGCGCCATTGTGACGACTCCTTAGCGACCTCTGCTGGGCAacgacaaaaacaaacaaactagTGTTCAACTGGATTTGGACTGAAGGGATCGGTTtgaggaggtgtggaggaggcTGTGTATGGTGGAGTGATATCTGGGCTGGAGATTAGAGGATGGGCAGGTACTCTTAACCACTACTGAATTACTGTGAGTGCTGCTACAACATGGGCTTTGGTTTATTGCTCTAGCAGCCTTGTTTCAAAATGAAGCCACATCAAACttaggagaagagaagagggttgCTGCTCCTGTGCGTCATCTATTCTACATGACcatcctgactgactgacagaagGACCGaccgagggagggggggagggaagagTATGCCATCAATTGCacatgaatttttttttttgtaggtaATATTACATATATGTTTAAAATAATGGAACAAAACACtgctatttgtattattttttatataaatatttttattttgattATTGGTACATTTGGATAATATGCTGTACCCTCTAACCATAGACACTCGATCCATTTGTACTATTTTGACGTGTTTTTAATAACAAGCAGATTTGGTTAGCCTGTTAAGTATCAAGTACGTCCCGCTTGTTTTTCAAAACCTATGTCAACCATCACCAATCAGCAAATGTGTATAAGGGACAGTCAAGCATGATTACGCAACCATCACTTATGACCAAGTGTATTTCCCCACTCCATAAATCAACCATATGAgataggcctagattcaatcagatcaattGTTAAGCGGCAATTGCCGACATGtgcatagctgatgttttggcggTGTTGGAGTTGTCaaaatcggtgagcagctgctctttgtcatttttttattttattttttttctaaatttttctccccaatttcgtagtatccaatcatttagtag
>TU997184
gtgtgtgtgtgtgtgtgtgtgtgtataaacatCAACAACGAGCATGGTTTGAGGCTTTCTCTTCCATAGTGTATATCCCCTGGAATAGTGGAGACTGAGTTTGCCTTCCGGCACCACAACAGCGATCCAGAGAAAGCAGCTGCTGTGTATGAGAGTATAAAATGTTTGAAAGCACAAGACATAGCCAGTGCAGTCACATACATTCTGGGCGCCCCGCCTCATGTCCAGATCGGAGATGTGCAGATGAGGCCGGTGGAACAGATGTCATAGCAACAGAGCAGGAAGTTAAGCAACTGGAGGAGCCGATAGAGCCAGACAGCAAGCGCCATTGTGACGACTCCTTAGCGACCTCTGCTGGGCAacgacaaaaacaaacaaactagTGTTCAACTGGATTTGGACTGAAGGGATCGGTTtgaggaggtgtggaggaggcTGTGTATGGTGGAGTGATATCTGGGCTGGAGATTAGAGGATGGGCAGGTACTCTTAACCACTACTGAATTACTGTGAGTGCTGCTACAACATGGGCTTTGGTTTATTGCTCTAGCAGCCTTGTTTCAAAATGAAGCCACATCAAACttaggagaagagaagagggttgCTGCTCCTGTGCGTCATCTATTCTACATGACcatcctgactgactgacagaagGACCGaccgagggagggggggagggaagagTATGCCATCAATTGCacatgaatttttttttttgtaggtaATATTACATATATGTTTAAAATAATGGAACAAAACACtgctatttgtattattttttatataaatatttttattttgattATTGGTACATTTGGATAATATGCTGTACCCTCTAACCATAGACACTCGATCCATTTGTACTATTTTGACGTGTTTTTAATAACAAGCAGATTTGGTTAGCCTGTTAAGTATCAAGTACGTCCCGCTTGTTTTTCAAAACCTATGTCAACCATCACCAATCAGCAAATGTGTATAAGGGACAGTCAAGCATGATTACGCAACCATCACTTATGACCAAGTGTATTTCCCCACTCCATAAATCAACCATATGAgataggcctagattcaatcagatcaattGTTAAGCGGCAATTGCCGACATGtgcatagctgatgttttggcggTGTTGGAGTTGTCaaaatcggtgagcagctgctctttgtcatttttttattttattttttttctaaatttttctccccaatttcgtagtatccaatcatttagtagctactatcttgtctcatcactacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgtcctccgatagacaacccaaccaagccgccctgcttcttaaaacctcttgatactacccatcccgggtccgggagtgttgtcatcaactgacactaattagcataacgcaacggacataaatattactagaaaatattcctattcatgaaatcacaagtaaatatattgaaacacagcttagccttttgttaatcaccctgtcatctcagattttgaaaatagcAAGCAACCTGGTCAcgataaatcgtttacctttgatgagctttggataTTTTCACCcgcgagactcccagttagatagcaaatgttcctttttccaaaaatattatttttgtcggcgaaatagctccatttgttcttcacgtttggctgagaaatcgaccggaaattgcggtcacgacataTATATATGCCAAATTAGCTCCAtcatatcgacagaaacatggcaaacgttgtttataatcaatccacaaggtgtttttcaaatatctattcgataatatatcaactgggactggtggcttcttagtaggagcgagagaaacaatggccgcatttgtcctttacgcacaaaacactctgagagacgttcagctgaccactgacgcaatgttgacgttcaggctcatttttcaaaataaaaaactatgTATTGGAACTATGTATTGTGAcgctagacacattagggaagccatagaaaggggaatctggttgatatccctttcactgctcaatagggacgcataggaacgcagaggtttctaaataagagtcacttcctgattggatttttctcaggctttcgcgtgcaatatcagttctgttatactcacagacaatatctttacagttttggaaactttagagtgttttctatcctaatctgacaattatatgcatattccagcatcttgtcctgacaaaatagcctgtttactttggggatgttatttttccaaaaatgaaaatagtgccccctagattcaagaggttaacacagcgccatccaacccggaagccagccgcaccaatgtgtcggaggaaacaccgtgcacctggcaaccttggttagcgccctctgcgccaggcccgccacaggagtcgctggtgcacgatgagacaaggatttccgcCCTTAGCCACTGCGCCACCCTGCTCTTTATCATTGTCACGAAGCCATACCTGCCGGGAgatgcttgtggatttgacagctctaacacagGTCCACCGCCGACATttacaaaacatttgtttttcagATGTCAGTTAAAGCGTATTTGATTGAATAAGGCCCTTAAATTGTTTTGCACCAtagagatagaggactcatctttgtatctgtaccattatggcatctgtgacagGACGGGCCACGCCACTGATGCTTAGTACATTTTCTTCacgattggctgatccctcctgatggaGTCATGTCCAACGGGGTCACCAGGAGGAATCAGCCAATGAAGTCCCACCCATatgactacattaaaatggtggaagccctcaatggcgctgcccatacTAATATGACCTTTTGGCCGCAAGAGGCCTTTGTCATTCTCTATGTTTTGACTTTGGATCCGTTTGGAGGGAGGAGCATAAAGAAAACACTGGCATCTTGTCTCGAGGAAGTTACTAACTCATGAGTGCACATGTATACTTTCCCCCAAGTGTGTACTTGTATGATACAGTAGATATTTCTCAATAAAATGAAATAATTGTCAAAG

Function

NR:

description
dehydrogenase/reductase SDR family member 11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618017.2 False 1959 mRNA 0.45 7 29804272 29835099
TU997184 True 3036 lncRNA 0.43 3 29833393 29836898
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Neighbor

gene id symbol gene type direction distance location
LOC110533617 LOC106603494 coding upstream 18977 29683275 ~ 29785295 (+)
LOC118966731 NA coding upstream 174772 29586452 ~ 29629500 (+)
gemin5 LOC106603490 coding upstream 278709 29506273 ~ 29525563 (+)
LOC118936921 NA coding upstream 564079 29231527 ~ 29240203 (+)
rars1 syrc coding upstream 1074905 28699373 ~ 28729367 (+)
LOC100653448 flt2 coding downstream 8922 29844021 ~ 29881548 (+)
LOC110533623 NA coding downstream 54200 29889260 ~ 29917633 (+)
LOC110533619 LOC106603497 coding downstream 86954 29919276 ~ 29986082 (+)
LOC110533629 LOC106603502 coding downstream 186391 30021091 ~ 30022290 (+)
LOC110533631 LOC106603505 coding downstream 245981 30081080 ~ 30199949 (+)
G876060 NA non-coding upstream 37430 29766589 ~ 29766842 (+)
G876033 NA non-coding upstream 77514 29726469 ~ 29726758 (+)
G876032 NA non-coding upstream 79051 29721281 ~ 29725221 (+)
G876025 NA non-coding upstream 89408 29714613 ~ 29714864 (+)
G876084 NA non-coding downstream 69663 29904762 ~ 29905984 (+)
G876094 NA non-coding downstream 211239 30046338 ~ 30079512 (+)
G875776 NA other upstream 221742 29581126 ~ 29582530 (+)
G875756 LOC106603491 other upstream 256997 29546639 ~ 29547275 (+)
G874876 NA other upstream 974108 28829772 ~ 28830164 (+)
G874510 NA other upstream 1065367 28727774 ~ 28738905 (+)
G874378 NA other upstream 1219857 28577452 ~ 28584415 (+)
G876079 ubb other downstream 185542 30020641 ~ 30050053 (+)
LOC110533640 LOC106603515 other downstream 913407 30748439 ~ 30771331 (+)
G877809 NA other downstream 1369984 31205083 ~ 31205418 (+)

Expression

LOC110533618(LOC106603495) Expression in all Baseline Samples

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LOC110533618(LOC106603495) Expression in each Bioproject

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LOC110533618(LOC106603495) Expression in each Sample
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Co-expression Network