LOC110533623


Basic Information

Item Value
gene id LOC110533623
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 29889260 ~ 29917633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053616.1
GAACGAGACGGGGTATTGCATCCACCTCTCCCCCAGGGAGGGAGAGTCTGGGTGGATGAAGAAGCGGTTGGGAAGATGTGACTCGGTCATACCACTCACTTCCCAGCGATCCCTGCTCCACTGCACAGGACAAAGCTCGCGACCCTGGAGCGACACCCGGACTTGAAGAGCTGAAAGCTCGGGTTCACACCCGACTTTACCGCTGCTGTTCCAAGACTGGCCCCGCCGAACCGCATCTTTACAATCTAGTAGAAGGGCCTACACAGAACTTGTATGGACTGGAGACTCATGTTCTGCTCTTCTGCTCATATGTTATGTAGAGGTAAATCAGAACATTACAGAACATTTATATGAATGTCTATAAAGCAAATTTAGTCTGATTTAGATGTGAAATGTGAAATTGCATTTTTACAAAGTAAAGCaaatgtatattattattatttttaattccaAACTTAAATAAATGATGTTTTTGTCCTCCTGCT
>TU997197
ACTGGAGTTGAGGGTGTTGTTGGTGAGTTTGAGCTTGTGGAACGAGACGGGGTATTGCATCCACCTCTCCCCCAGGGAGGGAGAGTCTGGGTGGATGAAGAAGCGGTTGGGAAGATGTGACTCGGTCATACCACTCACTTCCCAGCGATCCCTGCTCCACTGCACAGGACAAAGCTCGCGACCCTGGAGCGACACCCGGACTTGAAGAGCTGAAAGCTCGGGTTCACACCCGACTTTACCGCTGCTGTTCCAAGACTGGCCCCGCCGAACCGCATCTTTACAATCTAGTAGAAGCAGAGAGCATGAAGACATCCTTGAAGTGGGCCCTGCCCTGTTGGGTCTTCAGAGCTCTCAGCTGCTCTTTACTCAGCCACGACTGGGCCTCACTGCCCTCATGAGGAGCCACATCACCACCTGGCTCGCCCTCATCTCCAGACCCTGGTGTCCTGGTCTCCCTgtccgtcctcctctcagcccaGGGGGGCTTGATCACACTGCGGACCTGCAGCTTCCGCACATTCACCACTCCACATGTCAGATCTGCTGTAATCTCCAACAACCTGCTCTTGCTCTTCAGCGAGTCAACCTGTGCCATACACACAGTAGAGGGTTCATGTAACAATTCATATGTAGTAGACAGTTCCTAGTATATTACATGCTAATAATGCATTATATCATATGACAACCACAATCTCACCTCAGTGCATATTTAAGATGAGGCcatggagagaggatgaggttTGCATGTGTCTGCTATATAAATAGAGAAGTACCTTATTGAGAACTAGGACTGCTGGGACATCTGGGTACTGGGTCAGGCATTTCAGGACCTCAAAGTCTAGCTTGTTGCAGGCCCACTTGTCCGACACATCCACCATTATCACCACTGAAGAGATAACAACAACAAGAGGACCTAAACACAATGCAGTGCATTGTCATTTGCCcaaaattattttatttcaaaGGAATTGCAAAATGTGTGGGGCCACATATTGTTTAAAAAGCATAGACTAGACTGTCTGAAAAGCAATAGCCTTGCAGCAATCATCTGTGTGCCCGAAAAGTTGCAAAAAGTGAAGAATCGTGCAGTACCACGGTCAGCTTCCTTGACAATATTCCAAGGATCCTCGAGGAGAGACTTCTCCAGCTGGTGCCTGTGGAGAAGATAAATAGCCCGTTGGAGATTCGCCTATTTCATTTTATGCACTGCAATACCACAGTAATGAAACCGGTGTAACAAATCACCTCTTGACTTTTGAAGGTGTAGTGAGTCCAGGAGTGTCAAGTAAAATCTAGAGAGAGAATGTATAAgtatacatgtacagttgaagtcggaagtttacatacacctcagccaaatacatgtaaactcagtttttcacaattcctgacattttatcctagtagaatgtccctatcttaggtcagttaggatcaccactttcttttaagaatgtgaaatgtcagaataatagtagagagaatgatttatttcagcttttatttctttcatcacattcccagtgtgttaatgttttacatacactcaattagtatttggtaacattgcctttaaaattgtttaacttgggtcaaacatttcaggtagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaattgagtcagatttgtaggcttccttgcttgcacaagttttttcagttctgcccacaaattttctataggattgaggtcagggctttgtgatggcctccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggacattgtccatttggaagactaagcttgtcttgagattttgcttcaatatatccacataattgtcctccctcatgatgccatctaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagatagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatagaactttttggtaaaaactcgtcgtgtttggaggacaaagaacgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacattatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggcaatgtatcatgagattttgagtgaaaacctccttccatcagcaagggcattgaagataaaacgtggctgggtctttcagcatgacagaccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttggcctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccaccataatttgc

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053616.1 False 485 mRNA 0.45 3 29889299 29900576
TU997197 True 2566 lncRNA 0.45 3 29889260 29917633

Neighbor

gene id symbol gene type direction distance location
LOC100653448 flt2 coding upstream 7751 29844021 ~ 29881548 (+)
LOC110533618 LOC106603495 coding upstream 54200 29804272 ~ 29836898 (+)
LOC110533617 LOC106603494 coding upstream 104004 29683275 ~ 29785295 (+)
LOC118966731 NA coding upstream 259799 29586452 ~ 29629500 (+)
gemin5 LOC106603490 coding upstream 363736 29506273 ~ 29525563 (+)
LOC110533619 LOC106603497 coding downstream 21477 29919276 ~ 29986082 (+)
LOC110533629 LOC106603502 coding downstream 120914 30021091 ~ 30022290 (+)
LOC110533631 LOC106603505 coding downstream 180504 30081080 ~ 30199949 (+)
LOC110533637 LOC106603512 coding downstream 560324 30460900 ~ 30463978 (+)
LOC110533640 LOC106603515 coding downstream 847863 30748439 ~ 30771331 (+)
G876060 NA non-coding upstream 122457 29766589 ~ 29766842 (+)
G876033 NA non-coding upstream 162541 29726469 ~ 29726758 (+)
G876084 NA non-coding downstream 4186 29904762 ~ 29905984 (+)
G876094 NA non-coding downstream 145762 30046338 ~ 30079512 (+)
G876079 ubb non-coding downstream 147552 30020641 ~ 30050053 (+)
G876209 NA non-coding downstream 312789 30213365 ~ 30213938 (+)
G875776 NA other upstream 306769 29581126 ~ 29582530 (+)
G875756 LOC106603491 other upstream 342024 29546639 ~ 29547275 (+)
G874876 NA other upstream 1059135 28829772 ~ 28830164 (+)
G874510 NA other upstream 1150394 28727774 ~ 28738905 (+)
G874378 NA other upstream 1304884 28577452 ~ 28584415 (+)
G877809 NA other downstream 1304507 31205083 ~ 31205418 (+)
G876284 NA non-coding downstream 347715 30265348 ~ 30265826 (+)

Expression


Co-expression Network