Item | Value |
---|---|
gene id | trpv1 |
gene name | trpv1 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048574.1 |
NCBI id | CM023228.2 |
chromosome length | 87811138 |
location | 29990552 ~ 30010544 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
trpv1 | Predicted to enable calcium channel activity. Acts upstream of or within response to heat and thermosensory behavior. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including epithelium; heart; keratinocyte; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in colorectal cancer; congenital stationary night blindness; keratosis (multiple); migraine (multiple); and schizophrenia. Orthologous to several human genes including TRPV1 (transient receptor potential cation channel subfamily V member 1). |
description |
---|
transient receptor potential cation channel subfamily V member 1-like isoform X1 |
id | name | namespace |
---|---|---|
GO:0034220 | ion transmembrane transport | biological_process |
GO:0016021 | integral component of membrane | cellular_component |
GO:0005216 | ion channel activity | molecular_function |
id | description |
---|---|
K05222 | TRPV1; transient receptor potential cation channel subfamily V member 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021618025.2 | False | 3754 | mRNA | 0.45 | 17 | 29990552 | 30010544 |
XM_021618024.2 | False | 3445 | mRNA | 0.47 | 17 | 29990646 | 30009344 |
XM_036990035.1 | True | 3350 | mRNA | 0.47 | 16 | 29990646 | 30009345 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110533621 | NA | coding | downstream | 67824 | 29906094 ~ 29922728 (-) |
tbx16l | LOC106603496 | coding | downstream | 90703 | 29882665 ~ 29899849 (-) |
LOC118966732 | NA | coding | downstream | 151816 | 29838058 ~ 29838736 (-) |
LOC110533616 | LOC106603491 | coding | downstream | 435183 | 29531930 ~ 29555369 (-) |
cnot8 | LOC106603492 | coding | downstream | 460013 | 29525965 ~ 29530539 (-) |
LOC110534880 | NA | coding | upstream | 6917 | 30017461 ~ 30020700 (-) |
LOC110533626 | LOC106603501 | coding | upstream | 11749 | 30022293 ~ 30041092 (-) |
LOC110533627 | ubb | coding | upstream | 37579 | 30048123 ~ 30049947 (-) |
adora2b | LOC106603509 | coding | upstream | 254852 | 30265396 ~ 30289795 (-) |
LOC110533632 | LOC106603510 | coding | upstream | 280211 | 30290755 ~ 30426929 (-) |
G877065 | NA | non-coding | downstream | 4157 | 29981447 ~ 29986395 (-) |
G876953 | NA | non-coding | downstream | 84568 | 29905385 ~ 29905984 (-) |
G876955 | NA | non-coding | downstream | 109040 | 29880243 ~ 29881512 (-) |
G876961 | NA | non-coding | downstream | 156027 | 29833388 ~ 29834525 (-) |
G877134 | NA | non-coding | upstream | 149637 | 30160181 ~ 30166669 (-) |
G877183 | NA | non-coding | upstream | 175354 | 30185898 ~ 30186597 (-) |
G877190 | LOC106603505 | non-coding | upstream | 184921 | 30195465 ~ 30196133 (-) |
G877179 | NA | non-coding | upstream | 186959 | 30197503 ~ 30199947 (-) |
G875194 | NA | other | downstream | 1005482 | 28941240 ~ 28985070 (-) |
G874706 | NA | other | downstream | 1447285 | 28540229 ~ 28543267 (-) |
G873784 | LOC106573797 | other | downstream | 2406290 | 27582929 ~ 27584262 (-) |
LOC110533580 | tex14 | other | downstream | 2637306 | 27330589 ~ 27366556 (-) |
G878962 | NA | other | upstream | 1436938 | 31447482 ~ 31449163 (-) |
G879440 | LOC106603524 | other | upstream | 2214888 | 32225432 ~ 32225936 (-) |
LOC110533652 | LOC106603525 | other | upstream | 2236467 | 32246991 ~ 32353202 (-) |
G879617 | NA | other | upstream | 2575347 | 32585891 ~ 32588838 (-) |
G879763 | NA | other | upstream | 2779823 | 32790367 ~ 32790802 (-) |