LOC110533637 (LOC106603512)


Basic Information

Item Value
gene id LOC110533637
gene name LOC106603512
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 30460900 ~ 30463978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618043.2
TCTTGAATTGACCAGCCGTTCACAAACATCATGGCGACGACCGTGAATAATGGAAATGTCCCTGTGTCGGACACACAATCCTCAACCTCGGCTGATCCACGCTATGAAGGTTCAACATTCCAGTACAGCATGCTCCTGGAGCACCTAATCGGGGAGAAGAGGCCGATTAAAGATTTGAATCCAACCGTTATGGGAGGTCTTCCCAATCCCATGAAAACCGACGACCAGAAGATGATCGAACGGGGAATGGAGAGCTGTGCCTTCAAGGCGGTGTTGGCATGTGTTGGAGGGTTTGTTCTTGGGGGAGCGTTTGGTGTGTTCACGGCTGGCATAGATACCAATGTGGGATTTGACCCCAAAGACCCCATGAGAACACCTACTGCCAGAGAAGTCCTTAAAGACATGGGCCAGAGGGGAATGTCCTACGCCAAAAACTTTGCAGTCATTGGAGCAATGTTCTCCTGCACAGAGTGCATCATTGAATCGCACAGGGGAAAGTCAGACTGGAAGAATGCTGTCTACAGTGGTTGTGTTACTGGGGGAGCAATAGGATTTCGTGGTGAGTTAACTACTTAATCTGGGGCGAAGGCTGGAGTGCTGGGATGTGGAGGTTTCGCTGCCTTCTCTGCTGCCATTGAGTACTATCTCCGGTGAAAACCAGGGGGCCTTCGTTACCCCTGTGGAATATGGTTGAGGTGACTGTCCCTCTGGGCCAGTAACAGACTTTATACCTCATGGAAAGAAACACATCCCAGAGAACACTGCTCTGCAGATGGCACATCTGGTCATGAGGATTATTACAGTTGGACAATTCCATCCTGGTCTTCATCAATCAATtacatttataaagcccttcttacatca
>XM_021618042.2
TCTTGAATTGACCAGCCGTTCACAAACATCATGGCGACGACCGTGAATAATGGAAATGTCCCTGTGTCGGACACACAATCCTCAACCTCGGCTGATCCACGCTATGAAGGTTCAACATTCCAGTACAGCATGCTCCTGGAGCACCTAATCGGGGAGAAGAGGCCGATTAAAGATTTGAATCCAACCGTTATGGGAGGTCTTCCCAATCCCATGAAAACCGACGACCAGAAGATGATCGAACGGGGAATGGAGAGCTGTGCCTTCAAGGCGGTGTTGGCATGTGTTGGAGGGTTTGTTCTTGGGGGAGCGTTTGGTGTGTTCACGGCTGGCATAGATACCAATGTGGGATTTGACCCCAAAGACCCCATGAGAACACCTACTGCCAGAGAAGTCCTTAAAGACATGGGCCAGAGGGGAATGTCCTACGCCAAAAACTTTGCAGTCATTGGAGCAATGTTCTCCTGCACAGAGTGCATCATTGAATCGCACAGGGGAAAGTCAGACTGGAAGAATGCTGTCTACAGTGGTTGTGTTACTGGGGGAGCAATAGGATTTCGTGCTGGGGCGAAGGCTGGAGTGCTGGGATGTGGAGGTTTCGCTGCCTTCTCTGCTGCCATTGAGTACTATCTCCGGTGAAAACCAGGGGGCCTTCGTTACCCCTGTGGAATATGGTTGAGGTGACTGTCCCTCTGGGCCAGTAACAGACTTTATACCTCATGGAAAGAAACACATCCCAGAGAACACTGCTCTGCAGATGGCACATCTGGTCATGAGGATTATTACAGTTGGACAATTCCATCCTGGTCTTCATCAATCAATtacatttataaagcccttcttacatcagctgatgtcacaaagttctgtacagaaaccctgcctaaaacagcaagaaatgcaggtatagaagcacagtggctaggaaaaactccctagaaaggacagaacctaggaagaaacctagaggaaccaggctatgaggggtggccagtcctcttctggctgtgccaggtggagattataacataacatggccaagatgttcatagatgaccagcagggtcaaataataataatcacattggttgtagagggtgcaacaggtcagcacctcaggagtaaattaCCTTTTGTTGACTGTATCCTGTGCACAGTGATGTCATACTGGCTTTTCTTTTATCGAAGTTAAACTTCGTCATTGAGATGAAACTGTCGGTTTTAGATGAGAGCTGGCTATTCTCTCCTTTAGTTGTGGGTAAAATACAGCCTGGTGACATTAAGTCAAAAGTTTGAGTCCAGGTCAATGGGTGTGTTTGAGTGTTAAGGCTAAAGCAACAAACACTAAATGTGCCATTGTTTATAAAAGGTTTTCTGTGTCAAAATAAACATCTGCATCCTCCAACACCCAAACTGAAACAAACGTGACCAAAAAAATCTACACTGTAAAGTTCATGAGTCAGAAGATTTCTAAGCTCCAGAACGCAAAACACTTTGAAAGGCGACGACTTGACAAAAGTTAGCTGCACTAATGCAACTAATTGTTTTATAGTCTCGGACTCAAACAGTCTTACTGTAAAAGCAACATTTACAGAATCCATCCAATTTATAGTTAACTGAAACAAGTCACCGGTGTAAATTGTTTATTTAAAGTCATTAAGCAATGCATTACATGACTGGACGTGCCCACCCAGATAAGATCTACAGATGTTGAAAATTCATTAATGGTGAATAATATGAACTCAGCGTTGTGGGTTCGATGTGTCATTTAATTGCAGGACTGGTTATCAATTAAAACACAAACCACTG

Function

NR:

description
mitochondrial import inner membrane translocase subunit Tim22-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17790 TIM22; mitochondrial import inner membrane translocase subunit TIM22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618043.2 False 864 mRNA 0.49 4 30460900 30463018
XM_021618042.2 True 1806 mRNA 0.44 4 30460900 30463978

Neighbor

gene id symbol gene type direction distance location
LOC110533631 LOC106603505 coding upstream 260951 30081080 ~ 30199949 (+)
LOC110533629 LOC106603502 coding upstream 438610 30021091 ~ 30022290 (+)
LOC110533619 LOC106603497 coding upstream 478552 29919276 ~ 29986082 (+)
LOC110533623 NA coding upstream 560324 29889260 ~ 29917633 (+)
LOC100653448 flt2 coding upstream 579352 29844021 ~ 29881548 (+)
LOC110533640 LOC106603515 coding downstream 284461 30748439 ~ 30771331 (+)
LOC110533641 LOC106603516 coding downstream 307475 30771453 ~ 30950758 (+)
LOC118937065 NA coding downstream 446125 30910103 ~ 30910156 (+)
LOC110533644 LOC106603518 coding downstream 508715 30972693 ~ 31020075 (+)
LOC110533645 LOC106603519 coding downstream 557981 31021959 ~ 31124747 (+)
G876424 NA non-coding upstream 1528 30459150 ~ 30459372 (+)
G876410 NA non-coding upstream 26325 30434346 ~ 30434575 (+)
G876398 NA non-coding upstream 33984 30417673 ~ 30426916 (+)
G876361 NA non-coding upstream 71162 30369252 ~ 30389738 (+)
G876296 NA non-coding upstream 177788 30282887 ~ 30283112 (+)
G876601 NA non-coding downstream 260234 30724212 ~ 30725822 (+)
G876813 NA non-coding downstream 617294 31081272 ~ 31081812 (+)
LOC110533646 LOC106603521 non-coding downstream 687875 31132784 ~ 31153474 (+)
G877782 NA non-coding downstream 712995 31176973 ~ 31177262 (+)
G876079 ubb other upstream 410847 30020641 ~ 30050053 (+)
G875776 NA other upstream 878370 29581126 ~ 29582530 (+)
G875756 LOC106603491 other upstream 913625 29546639 ~ 29547275 (+)
G877809 NA other downstream 741105 31205083 ~ 31205418 (+)
LOC110534883 med13 other downstream 777832 31241426 ~ 31382578 (+)
LOC110533671 LOC106603546 other downstream 2517888 32981866 ~ 33045499 (+)
LOC110533672 LOC106603547 other downstream 2667167 33130843 ~ 33140211 (+)

Expression


Co-expression Network