LOC110533640 (LOC106603515)


Basic Information

Item Value
gene id LOC110533640
gene name LOC106603515
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 30748439 ~ 30771331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618050.2
TAATGCAAGTTTCCCACAACGCTGCCGCGTCATCATGTCCGGAAGTGAGACAATATTGACAATATGGCCACTGGTCGCAGAAGGGGGAAGTTTTGGATTTGACAGCCCATTCTCCTCGGTCGCAAATAAACCCATTACCATCGTCAAGAATCGACGTATATGAATGAAGGGACTCGGGAATCCACGGGATGTTGTCATTGAGCTGAGGATACATTCAGAGCGTGAAAATCGTCATGTCGTTTTTCAGAAGGAAAGCAAAAGGCAAGGAACCCGAGCAACCAGTTGATGCAAAAGTCAATAGAGCCCTGGTAGCCCCAGCAAGCCCCCACTCCCCCTCCCATAGCCTCCGTAACCACCATGCCATCCTGGAGGTGGCGGGGCCCAGCCATGTGGCCATCAACGCCATCTCTGCAAACATGGACTCCTTTGCCCACGGACGCACGGCCATCCTCAAGAAACAGCCCAGCCACATGGAGGCTGCACACTTTGGGGATCTGGGGCACTCTAGTGTGAACTACCTGGCCTCTGAGACGCGTTCACGCCTGTCTAAGACAGTGGACCAGATCCTGCGGGACAATGTGGCCATGCCCTACTACATCCAGTTCCAGGAGGCCCGTGGGTCCGACCACTTGGTCCGCTTTTGGCTGGAGGCAGAGAGCTTCCGCTCAACCAGCTGGTGCCGGGTCCGGGCCAACAGtctcaactccatcaaacacaGCTCCCTTGCCGAGCCTGCCTCCACCCCTGTCTCCCCCGacccctcctcccccccagaCGTGGACCTACCCTCTGTCCCCAGGCCCCCCTCATCTCACCCCCTTACCCCCAGCCCCCAGGAGATAAACAGTAACAGTAGTGAAGGCCCCACTGTGCAGCTCGTCCACAGGGACTCCTTTAGCTCCTTAGTGGACCAGAGGCCAGGCACCCCCAGCAGGGAAGATACCCCCCCCAGGCAGAATTCCAGGACAGGGACCCCCTTCAAGCTGCAGTCCACCCACGCCCTCAAGGAGCTCTCAGACAAGCTCATGAAGAgtatagagagagatgcaGTGAACATCTTCACCAAGTACATCTCTCCAGACGCTGCTAGGCCCATCCCCATCACAGAACAGATTAGAAACGACATAGTCGCTAAAATCTGTGGCGAGGATGGAATGGTGGACCCAAACTGCTTTGTCATTGCACAGTCAGTCGTCTTCTCCATCATGGAGCAACAGCACTTTAGTGAATTCTTGCGCAGCCATCATTTCTGTAAGTACCAGATGGAAGTGTTGACCAGTGGCTCAGTGTTTCTGGCAGACATCTTGTTCTGTGAGTCGGCCCTATTCTACTTCTCTGAGTACATGGAGAAGGAGGACGCTGTGAATATCCTGCAGTTCTGGCTGGCAGCAGATAACTTCCAGGACCAGCTGGCTGCAATGGCGGGACAATACGACGGCCAGGAGGCCCAGAATGACGCCATGATCCTCTATGACAAGTATTTCTCACTCCAAGCCACCAAACCGCTGGGTTTCGATGACTCTGTGCGGATGGAGATAGAGTCTAATATATGCCGGGAAGGAGGGCCTCTACCAGACTGCTTCACCACTCCTCTCAGACAGGCCTGGACCACCATGGAAAAGGTCTACATGCCAGGCTTCCTGTCGAGTAACCTTTACTACAAGTATCTGAGTGACCTTATCAACTCTGTCCGAGCGGATGAGTTTGTCCTGGCCAGCGCTCCCGGTCAAGGCGTGGCCCCAGATGGTGACCGCAGCACCAATGCTACCGAGGGTTCTCAAACCCAGCAAGCTACCAAAAAGGTGGCAGCAGTGAAAATCCTGAAAAATTTTGACGAGGCGATAACGGTGGACATAGCCAGTTTGGATCCAGAGTCCCTGTACCAGCGCCCCTACGCTGGAAGAATGACGTTTGGGAAAGTGAACGAGCTGGGCCAGTTCATCAGGGAGGCCGAACCAGAGCCggatgtgaagaaatccaagggtTCCATACTTTCTCTAGCCATGAAGAAACTTGTTCAAGGCAACTCAGACGAGGCCCAGGAGGAAATGGCCTGGAAGATCGCTAAGATGATCGTCAATGACGTAGTACACCAGGCGCACCACAACAGTCCTGACAAATCCACTAAAtTATGACCCTCCAGTAGAGAACCAAAAGATTGTCACTCCCTTCATCCTATAGAGACAGACCGTGACAGACGGATGTCACCTAGTCCAGTGATGAACTGCACACTGGATTCACCTTATGGTGAAACACATCAATGAAAGTAGAAGAACAAAAGCATTCCATCATCTCCTGCATCAACTTGTACTGGTTTGTGTGTGAATATATGTGCGTGAGCGAAAGACTTGAAGTATATCGTCGTAACACTATGAAGGTATCTATGAAGCCAACAAGGCGGATGCACAAAGAGCACCCGACTTCCTTCCTTCCAGAACAAAAAGGAGGGATGACAACAAGGACGCAAAATGGTGCTGAACGGGAGCTGTCAGAAAGAGCAGCACTTCAGAAAGCAATGGTGCTGCCGTGGTTACTTCTGTTACCATGCCATCTAAGAGGGAGCCTGCAGGGGCCTGAAGCATCCTTCACTAAGCAATCACTAAGAAGACTAGGTTGTCCTCGCCATCTTCTCTCCGTAACCCAACCACCACTACCGCCTTTGCCCATTCCTCATTCTTTGTTTTTAGATTAAATCAATTTGAAAGTGGTCAGACTAATGCCCCACAAATTCCAGCTGGAAATAGGGGCAGATGCGTATCCTGCTTATATTCCTTGGCAGTCCTGGTGTATTTTGTCAGTGGGGTGGGTTACTATGATGAGATGGTGAGTCAGAGTTTTCCTTTCCTACCCTCCTGGCTGTGCCCAAATGTACTTTCTAGAGCAGGTCAGACATGTTACAGTCAAACTGGAATGGACCTTCTTGATTTCCTGGTCTTACCATCTACCTGTAGCTCTGGCGACCCCTGGCACCTTGTCCATATCATTAGAGAGCATAGGCTAATGAATAGATATGTCGTATTATGGCCTGAAGAAGACATGCTACGGTTGCAATGAAAGAAGAACTCCAGGCTACTCCATGTATTGTTATAAATATGTAGATTTCTGGTTTACCCCCATATATTAATGTTAGTTATTTTTTATGGTGATTGTTGCAGTTTTCTTTTTTGTATGTACTGTCGAAAGCAATGTTTAAGCAAATCTCATTGAAGTGTACTCAGTAATGTTAAGATTATTATGACTTTGCTTGAACCTCATTGAGATGTGTGGAAAAGAACCAGAAAATACTATTTTGGTACTATGTACCGCTAATATTGTTTCTCTGACCTATGTGTTCTTAATCTATAATATATTTAAATTGTGTttgatttaaatatatatatatattattgaaatGTTTGCCTTGTGTTTGTCTATTTAGTTTTTTATACAGAAGGGACAGAAATGCTACTAATGATGGAAAGTTACAGACTTCTTTCTCTTTGCACTGATTATGTATGAAATCTTGTCTGCTGCCAAACAGGGATGGATTTGGCTCTATTTCAGTCGTCATTAGCTTGTTGGCTGGTCATAGTTTGTGGCCATCACGTTGTTAATTGCACTTGGGTATTTAACCTCTAGTATTGCCAGATGGTAATGCAACCTGTAATTCAGCAAATGAATGCTCATCCCAGTGCAGTTTCAAGTGTGTGGTAAGCTTTTGCATAAGCTCTATTGGTGTTGTTGCTGCAGTTTTGCTCATCCAAATTGTTTTATCCTCATTTTATGTTGTACAGTATGATATACTTTATTGTAAGTATTTTATGGCATTCATGTAATTAAACTTTTCTGCCTATATTGTAGCTAAAGTAGGCAACGTTATCAAATA
>TU997763
CCACTGGTCGCAGAAGGGGGAAGTTTTGGATTTGACAGCCCATTCTCCTCGGTCGCAAATAAACCCATTACCATCGTCAAGAATCGACGTATATGAATGAAGGGACTCGGGAATCCACGGGATGTTGTCATTGAGCTGAGGATACATTCAGAGCGTGAAAATCGTCATGTCGTTTTTCAGAAGGAAAGCAAAAGGCAAGGAACCCGAGCAACCAGTTGATGCAAAAGTCAATAGAGCCCTGGTAGCCCCAGCAAGCCCCCACTCCCCCTCCCATAGCCTCCGTAACCACCATGCCATCCTGGAGGTGGCGGGGCCCAGCCATGTGGCCATCAACGCCATCTCTGCAAACATGGACTCCTTTGCCCACGGACGCACGGCCATCCTCAAGAAACAGCCCAGCCACATGGAGGCTGCACACTTTGGGGATCTGGGGCACTCTAGTGTGAACTACCTGGCCTCTGAGACGCGTTCACGCCTGTCTAAGACAGTGGACCAGATCCTGCGGGACAATGTGGCCATGCCCTACTACATCCAGTTCCAGGAGGCCCGTGGGTCCGACCACTTGGTCCGCTTTTGGCTGGAGGCAGAGAGCTTCCGCTCAACCAGCTGGTGCCGGGTCCGGGCCAACAGtctcaactccatcaaacacaGCTCCCTTGCCGAGCCTGCCTCCACCCCTGTCTCCCCCGacccctcctcccccccaga
>TU997764
CCACTGGTCGCAGAAGGGGGAAGTTTTGGATTTGACAGCCCATTCTCCTCGGTCGCAAATAAACCCATTACCATCGTCAAGAATCGACGTATATGAATGAAGGGACTCGGGAATCCACGGGATGTTGTCATTGAGCTGAGGATACATTCAGAGCGTGAAAATCGTCATGTCGTTTTTCAGAAGGAAAGCAAAAGGCAAGGAACCCGAGCAACCAGTTGATGCAAAAGTCAATAGAGCCCTGGTAGCCCCAGCAAGCCCCCACTCCCCCTCCCATAGCCTCCGTAACCACCATGCCATCCTGGAGGTGGCGGGGCCCAGCCATGTGGCCATCAACGCCATCTCTGCAAACATGGACTCCTTTGCCCACGGACGCACGGCCATCCTCAAGAAACAGCCCAGCCACATGGAGGCTGCACACTTTGGGGATCTGGGGCACTCTAGTGTGAACTACCTGGCCTCTGAGACGCGTTCACGCCTGTCTAAGACAGTGGACCAGATCCTGCGGGACAATGTGGCCATGCCCTACTACATCCAGTTCCAGGAGGCCCGTGGGTCCGACCACTTGGTCCGCTTTTGGCTGGAGGCAGAGAGCTTCCGCTCAACCAGCTGGTGCCGGGTCCGGGCCAACAGtctcaactccatcaaacacaGCTCCCTTGCCGAGC

Function

NR:

description
A-kinase anchor protein 10, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618050.2 False 3865 mRNA 0.48 15 30748439 30771331
TU997763 False 708 TUCP 0.57 4 30748506 30755656
TU997764 True 665 TUCP 0.56 4 30748506 30755613

Neighbor

gene id symbol gene type direction distance location
LOC110533637 LOC106603512 coding upstream 284461 30460900 ~ 30463978 (+)
LOC110533631 LOC106603505 coding upstream 548490 30081080 ~ 30199949 (+)
LOC110533629 LOC106603502 coding upstream 726149 30021091 ~ 30022290 (+)
LOC110533619 LOC106603497 coding upstream 766091 29919276 ~ 29986082 (+)
LOC110533623 NA coding upstream 847863 29889260 ~ 29917633 (+)
LOC110533641 LOC106603516 coding downstream 122 30771453 ~ 30950758 (+)
LOC118937065 NA coding downstream 138772 30910103 ~ 30910156 (+)
LOC110533644 LOC106603518 coding downstream 201362 30972693 ~ 31020075 (+)
LOC110533645 LOC106603519 coding downstream 250628 31021959 ~ 31124747 (+)
LOC110533646 LOC106603521 coding downstream 361453 31132784 ~ 31153474 (+)
G876601 NA non-coding upstream 22617 30724212 ~ 30725822 (+)
G876424 NA non-coding upstream 289067 30459150 ~ 30459372 (+)
G876410 NA non-coding upstream 313864 30434346 ~ 30434575 (+)
G876398 NA non-coding upstream 321523 30417673 ~ 30426916 (+)
G876361 NA non-coding upstream 358701 30369252 ~ 30389738 (+)
G876813 NA non-coding downstream 309941 31081272 ~ 31081812 (+)
G877782 NA non-coding downstream 405642 31176973 ~ 31177262 (+)
G877783 NA non-coding downstream 406115 31177446 ~ 31177676 (+)
G876079 ubb other upstream 698386 30020641 ~ 30050053 (+)
G875776 NA other upstream 1165909 29581126 ~ 29582530 (+)
G875756 LOC106603491 other upstream 1201164 29546639 ~ 29547275 (+)
G877809 NA other downstream 433752 31205083 ~ 31205418 (+)
LOC110534883 med13 other downstream 470479 31241426 ~ 31382578 (+)
LOC110533671 LOC106603546 other downstream 2210535 32981866 ~ 33045499 (+)
LOC110533672 LOC106603547 other downstream 2359814 33130843 ~ 33140211 (+)
G880069 NA other downstream 2529434 33300765 ~ 33301738 (+)

Expression


Co-expression Network